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Aliases for SH3PXD2A-AS1 Gene

Subcategory (RNA class) for SH3PXD2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SH3PXD2A-AS1 Gene

  • SH3PXD2A Antisense RNA 1 2 3 5

External Ids for SH3PXD2A-AS1 Gene

Previous GeneCards Identifiers for SH3PXD2A-AS1 Gene

  • GC10P105507

Summaries for SH3PXD2A-AS1 Gene

GeneCards Summary for SH3PXD2A-AS1 Gene

SH3PXD2A-AS1 (SH3PXD2A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3PXD2A-AS1 Gene

Genomics for SH3PXD2A-AS1 Gene

Regulatory Elements for SH3PXD2A-AS1 Gene

Enhancers for SH3PXD2A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F103756 1.5 FANTOM5 Ensembl ENCODE 0.3 +16.8 16793 13.3 ZFP64 KLF17 ARID4B SIN3A FEZF1 ZBTB40 ETS1 RARA ZNF366 FOS SH3PXD2A GSTO1 COL17A1 GSTO2 SH3PXD2A-AS1
GH10F103771 1.5 FANTOM5 Ensembl ENCODE 0.3 +26.5 26454 2.0 ATF1 PKNOX1 ZNF2 GLIS2 GATA2 FOS KLF7 ZNF263 SP3 REST USMG5 GSTO2 SH3PXD2A-AS1 SH3PXD2A
GH10F103777 1 Ensembl ENCODE 0.3 +31.5 31535 0.6 HDGF BCOR ZMYM3 EBF1 RELA ZNF664 ZFHX2 EGR1 EED CREM SH3PXD2A-AS1 SH3PXD2A
GH10F103779 1 Ensembl ENCODE 0.3 +35.6 35560 4.6 CTCF TFAP4 CBX3 SAP130 ARID4B ZIC2 RAD21 RBAK SMC3 NFE2 SH3PXD2A GSTO1 GSTO2 CFAP43 SH3PXD2A-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SH3PXD2A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SH3PXD2A-AS1 Gene

103,745,966 bp from pter
103,755,423 bp from pter
9,458 bases
Plus strand

Genomic View for SH3PXD2A-AS1 Gene

Genes around SH3PXD2A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SH3PXD2A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SH3PXD2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3PXD2A-AS1 Gene

Proteins for SH3PXD2A-AS1 Gene

Post-translational modifications for SH3PXD2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3PXD2A-AS1 Gene

Domains & Families for SH3PXD2A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3PXD2A-AS1 Gene

Function for SH3PXD2A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SH3PXD2A-AS1 Gene

Localization for SH3PXD2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SH3PXD2A-AS1 Gene

Pathways & Interactions for SH3PXD2A-AS1 Gene

SuperPathways for SH3PXD2A-AS1 Gene

No Data Available

Interacting Proteins for SH3PXD2A-AS1 Gene

Gene Ontology (GO) - Biological Process for SH3PXD2A-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SH3PXD2A-AS1 Gene

Transcripts for SH3PXD2A-AS1 Gene

mRNA/cDNA for SH3PXD2A-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SH3PXD2A-AS1 Gene

SH3PXD2A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SH3PXD2A-AS1 Gene

No ASD Table

Relevant External Links for SH3PXD2A-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SH3PXD2A-AS1 Gene

SOURCE GeneReport for Unigene cluster for SH3PXD2A-AS1 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SH3PXD2A-AS1 Gene

Orthologs for SH3PXD2A-AS1 Gene

Evolution for SH3PXD2A-AS1 Gene

Gene Tree for SH3PXD2A-AS1 (if available)
Gene Tree for SH3PXD2A-AS1 (if available)

No data available for Orthologs for SH3PXD2A-AS1 Gene

Paralogs for SH3PXD2A-AS1 Gene

No data available for Paralogs for SH3PXD2A-AS1 Gene

Variants for SH3PXD2A-AS1 Gene

Sequence variations from dbSNP and Humsavar for SH3PXD2A-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10883904 -- 103,748,523(+) GGTGA(C/T)GGTCC intron-variant
rs10883905 -- 103,749,356(+) GTCAC(A/G)CTTTG intron-variant
rs111825209 -- 103,754,990(+) ACACA(A/C)ATCAC intron-variant, nc-transcript-variant
rs11191791 -- 103,746,464(+) ACAGG(C/T)ATGCG intron-variant, upstream-variant-2KB
rs11191792 -- 103,746,702(+) TGGCC(A/G)GGCAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SH3PXD2A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv475989 CNV novel sequence insertion 20440878

Relevant External Links for SH3PXD2A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SH3PXD2A-AS1 Gene

Disorders for SH3PXD2A-AS1 Gene

Relevant External Links for SH3PXD2A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SH3PXD2A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SH3PXD2A-AS1 Gene

Publications for SH3PXD2A-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SH3PXD2A-AS1 Gene

Sources for SH3PXD2A-AS1 Gene

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