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Aliases for SH3PXD2A-AS1 Gene

Subcategory (RNA class) for SH3PXD2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SH3PXD2A-AS1 Gene

  • SH3PXD2A Antisense RNA 1 2 3 5

External Ids for SH3PXD2A-AS1 Gene

Previous GeneCards Identifiers for SH3PXD2A-AS1 Gene

  • GC10P105507

Summaries for SH3PXD2A-AS1 Gene

GeneCards Summary for SH3PXD2A-AS1 Gene

SH3PXD2A-AS1 (SH3PXD2A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SH3PXD2A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3PXD2A-AS1 Gene

Genomics for SH3PXD2A-AS1 Gene

GeneHancer (GH) Regulatory Elements for SH3PXD2A-AS1 Gene

Promoters and enhancers for SH3PXD2A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I103744 Enhancer 1 Ensembl ENCODE dbSUPER 550.8 +1.1 1076 5.2 CTCF KLF1 SMARCC1 JUN KLF17 DPF2 ZNF121 ZFHX2 JUND CREB1 SH3PXD2A-AS1 SH3PXD2A STN1 COL17A1 NT5C2 GSTO1 GSTO2
GH10I103756 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.4 12350 4.4 FOXA2 ARID4B SIN3A BATF RARA ETS1 ZSCAN5C FOS JUNB REST SH3PXD2A GSTO1 GSTO2 SH3PXD2A-AS1
GH10I103771 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +26.5 26454 2 PKNOX1 ATF1 SIN3A ZNF2 TCF12 GLIS2 KLF7 FOS ATF7 KLF13 ATP5MD GSTO2 SH3PXD2A-AS1 SH3PXD2A
GH10I103763 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +18.0 18042 1.1 ETV1 BACH1 MAX ZBTB40 ZIC2 ZFHX2 ZNF316 POLR2A ETV6 NFE2 GSTO2 SH3PXD2A-AS1 SH3PXD2A
GH10I103742 Enhancer 0.5 dbSUPER 0.8 -2.4 -2352 1.3 ZFHX2 VEZF1 NRF1 EGR2 GC10M103742 SH3PXD2A STN1 GSTO2 GSTO1 SH3PXD2A-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SH3PXD2A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SH3PXD2A-AS1 Gene

Genomic Locations for SH3PXD2A-AS1 Gene
chr10:103,745,966-103,755,423
(GRCh38/hg38)
Size:
9,458 bases
Orientation:
Plus strand
chr10:105,506,537-105,515,167
(GRCh37/hg19)

Genomic View for SH3PXD2A-AS1 Gene

Genes around SH3PXD2A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SH3PXD2A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SH3PXD2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3PXD2A-AS1 Gene

Proteins for SH3PXD2A-AS1 Gene

Post-translational modifications for SH3PXD2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3PXD2A-AS1 Gene

Domains & Families for SH3PXD2A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3PXD2A-AS1 Gene

Function for SH3PXD2A-AS1 Gene

Phenotypes From GWAS Catalog for SH3PXD2A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SH3PXD2A-AS1 Gene

Localization for SH3PXD2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SH3PXD2A-AS1 Gene

Pathways & Interactions for SH3PXD2A-AS1 Gene

SuperPathways for SH3PXD2A-AS1 Gene

No Data Available

Interacting Proteins for SH3PXD2A-AS1 Gene

Gene Ontology (GO) - Biological Process for SH3PXD2A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SH3PXD2A-AS1 Gene

Drugs & Compounds for SH3PXD2A-AS1 Gene

No Compound Related Data Available

Transcripts for SH3PXD2A-AS1 Gene

mRNA/cDNA for SH3PXD2A-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SH3PXD2A-AS1 Gene

SH3PXD2A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SH3PXD2A-AS1 Gene

No ASD Table

Relevant External Links for SH3PXD2A-AS1 Gene

GeneLoc Exon Structure for
SH3PXD2A-AS1
ECgene alternative splicing isoforms for
SH3PXD2A-AS1

Expression for SH3PXD2A-AS1 Gene

SOURCE GeneReport for Unigene cluster for SH3PXD2A-AS1 Gene:

Hs.655149
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SH3PXD2A-AS1 Gene

Orthologs for SH3PXD2A-AS1 Gene

Evolution for SH3PXD2A-AS1 Gene

ENSEMBL:
Gene Tree for SH3PXD2A-AS1 (if available)
TreeFam:
Gene Tree for SH3PXD2A-AS1 (if available)

No data available for Orthologs for SH3PXD2A-AS1 Gene

Paralogs for SH3PXD2A-AS1 Gene

No data available for Paralogs for SH3PXD2A-AS1 Gene

Variants for SH3PXD2A-AS1 Gene

Sequence variations from dbSNP and Humsavar for SH3PXD2A-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000167350 -- 103,750,108(+) A/G intron_variant
rs1000215592 -- 103,754,602(+) G/A non_coding_transcript_variant
rs1000511928 -- 103,750,243(+) GGGGG/GGGGGG intron_variant
rs1000937771 -- 103,755,799(+) C/T downstream_transcript_variant
rs1001113486 -- 103,748,971(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SH3PXD2A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv475989 CNV novel sequence insertion 20440878

Additional Variant Information for SH3PXD2A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SH3PXD2A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SH3PXD2A-AS1 Gene

Disorders for SH3PXD2A-AS1 Gene

Additional Disease Information for SH3PXD2A-AS1

No disorders were found for SH3PXD2A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SH3PXD2A-AS1 Gene

Publications for SH3PXD2A-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SH3PXD2A-AS1 Gene

Sources for SH3PXD2A-AS1 Gene

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