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Aliases for SH3GL1P2 Gene

Aliases for SH3GL1P2 Gene

  • SH3 Domain Containing GRB2 Like 1, Endophilin A2 Pseudogene 2 2 3 5
  • SH3 Domain Containing GRB2 Like 1 Pseudogene 2 2 3
  • SH3-Domain GRB2-Like Pseudogene 2 2 3
  • SH3-Domain GRB2-Like 1 Pseudogene 2 3
  • CNSA-P2 3
  • SH3GLP2 3

External Ids for SH3GL1P2 Gene

Previous HGNC Symbols for SH3GL1P2 Gene

  • SH3GLP2

Previous GeneCards Identifiers for SH3GL1P2 Gene

  • GC17P025971
  • GC17P028947
  • GC17M025157

Summaries for SH3GL1P2 Gene

GeneCards Summary for SH3GL1P2 Gene

SH3GL1P2 (SH3 Domain Containing GRB2 Like 1, Endophilin A2 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3GL1P2 Gene

Genomics for SH3GL1P2 Gene

Regulatory Elements for SH3GL1P2 Gene

Enhancers for SH3GL1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F029743 1.3 Ensembl ENCODE 38.3 -879.5 -879487 1.8 FEZF1 ZNF2 SLC30A9 ZNF302 ZNF548 ZNF202 YY2 TSHZ1 ZNF488 MIER3 SH3GL1P2 NUFIP2 CORO6 ENSG00000265289 ENSG00000264647 ENSG00000266111 NDUFS5P7 ENSG00000214719 LOC101927093 LOC105371715
GH17F029731 1 Ensembl ENCODE 35.1 -890.8 -890817 3.8 HDGF PKNOX1 ZNF140 ZBTB40 ZNF664 ZNF791 ZNF354C ZNF433 ZNF202 ZNF680 CORO6 SH3GL1P2 SMURF2P1 NUFIP2 LRRC37BP1 RNU6-920P SUZ12P1 ANKRD13B ENSG00000239129 LOC101927093
GH17F029638 1.7 FANTOM5 Ensembl ENCODE 15.1 -981.8 -981846 8.2 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 ZNF143 FOS REST CORO6 SMURF2P1 SH3GL1P2 ANKRD13B LRRC37BP1 ENSG00000264577 ENSG00000252657 NUFIP2 TAOK1 ENSG00000239129
GH17F030949 1.5 FANTOM5 Ensembl ENCODE 15.1 +332.0 331974 13.0 HDGF PKNOX1 ARID4B YY1 ZNF121 ZNF202 SP5 REST KAT8 MIER3 UTP6 SUZ12 ATAD5 SH3GL1P2 TEFM SMURF2P1 SUZ12P1 RNF135 ENSG00000264456 LRRC37BP1
GH17F031548 1.4 Ensembl ENCODE 14.2 +925.5 925483 2.4 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 FOS UTP6 SUZ12 SH3GL1P2 ATAD5 DPRXP4 RNF135 ENSG00000264456 TEFM RAB11FIP4 PSMD11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SH3GL1P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SH3GL1P2 Gene

Chromosome:
17
Start:
30,624,318 bp from pter
End:
30,626,823 bp from pter
Size:
2,506 bases
Orientation:
Plus strand

Genomic View for SH3GL1P2 Gene

Genes around SH3GL1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SH3GL1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SH3GL1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3GL1P2 Gene

Proteins for SH3GL1P2 Gene

Post-translational modifications for SH3GL1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3GL1P2 Gene

Domains & Families for SH3GL1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3GL1P2 Gene

Function for SH3GL1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SH3GL1P2 Gene

Localization for SH3GL1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SH3GL1P2 Gene

Pathways & Interactions for SH3GL1P2 Gene

SuperPathways for SH3GL1P2 Gene

No Data Available

Interacting Proteins for SH3GL1P2 Gene

Gene Ontology (GO) - Biological Process for SH3GL1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SH3GL1P2 Gene

Transcripts for SH3GL1P2 Gene

mRNA/cDNA for SH3GL1P2 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SH3GL1P2 Gene

No ASD Table

Relevant External Links for SH3GL1P2 Gene

GeneLoc Exon Structure for
SH3GL1P2
ECgene alternative splicing isoforms for
SH3GL1P2

Expression for SH3GL1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SH3GL1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SH3GL1P2 Gene:

SH3GL1P2

SOURCE GeneReport for Unigene cluster for SH3GL1P2 Gene:

Hs.684860
genes like me logo Genes that share expression patterns with SH3GL1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SH3GL1P2 Gene

Orthologs for SH3GL1P2 Gene

Evolution for SH3GL1P2 Gene

ENSEMBL:
Gene Tree for SH3GL1P2 (if available)
TreeFam:
Gene Tree for SH3GL1P2 (if available)

No data available for Orthologs for SH3GL1P2 Gene

Paralogs for SH3GL1P2 Gene

No data available for Paralogs for SH3GL1P2 Gene

Variants for SH3GL1P2 Gene

Sequence variations from dbSNP and Humsavar for SH3GL1P2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs112913328 -- 30,622,981(+) TTTAG(A/G)TCTAT intron-variant, upstream-variant-2KB
rs112940621 -- 30,624,888(+) CCGCC(A/G)CCTGG intron-variant, nc-transcript-variant
rs113936706 -- 30,623,648(+) CACCC(-/A/CCCA)CCCCC intron-variant, upstream-variant-2KB
rs113953414 -- 30,623,463(+) TGTAT(A/T)TATTA intron-variant, upstream-variant-2KB
rs115298584 -- 30,625,396(+) ACGCT(C/G/T)ATCAA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SH3GL1P2 Gene

Variant ID Type Subtype PubMed ID
nsv960083 CNV duplication 23825009
nsv9534 CNV gain 18304495
nsv827943 CNV gain 20364138
nsv7292 OTHER inversion 18451855
nsv515870 CNV gain 19592680
nsv499557 OTHER inversion 21111241
nsv457720 CNV loss 19166990
nsv1060557 CNV gain 25217958
esv2715813 CNV deletion 23290073
dgv3138n100 CNV gain 25217958

Relevant External Links for SH3GL1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SH3GL1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SH3GL1P2 Gene

Disorders for SH3GL1P2 Gene

Relevant External Links for SH3GL1P2

Human Genome Epidemiology (HuGE) Navigator
SH3GL1P2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SH3GL1P2

No disorders were found for SH3GL1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SH3GL1P2 Gene

Publications for SH3GL1P2 Gene

  1. A novel SH3-containing human gene family preferentially expressed in the central nervous system. (PMID: 9169142) Giachino C. … Migone N. (Genomics 1997) 2 3 64
  2. RNF135 mutations are not present in patients with Sotos syndrome-like features. (PMID: 19291764) Visser R. … Losekoot M. (Am. J. Med. Genet. A 2009) 3 64

Products for SH3GL1P2 Gene

Sources for SH3GL1P2 Gene

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