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Aliases for SH3GL1P2 Gene

Aliases for SH3GL1P2 Gene

  • SH3 Domain Containing GRB2 Like 1, Endophilin A2 Pseudogene 2 2 3 5
  • SH3 Domain Containing GRB2 Like 1 Pseudogene 2 2 3
  • SH3-Domain GRB2-Like Pseudogene 2 2 3
  • SH3-Domain GRB2-Like 1 Pseudogene 2 3
  • CNSA-P2 3
  • SH3GLP2 3

External Ids for SH3GL1P2 Gene

Previous HGNC Symbols for SH3GL1P2 Gene

  • SH3GLP2

Previous GeneCards Identifiers for SH3GL1P2 Gene

  • GC17P025971
  • GC17P028947
  • GC17M025157

Summaries for SH3GL1P2 Gene

GeneCards Summary for SH3GL1P2 Gene

SH3GL1P2 (SH3 Domain Containing GRB2 Like 1, Endophilin A2 Pseudogene 2) is a Pseudogene.

Additional gene information for SH3GL1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3GL1P2 Gene

Genomics for SH3GL1P2 Gene

GeneHancer (GH) Regulatory Elements for SH3GL1P2 Gene

Promoters and enhancers for SH3GL1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I029743 Enhancer 1.4 Ensembl ENCODE dbSUPER 57.9 -879.5 -879486 1.8 FOXA2 SIN3A FEZF1 ZNF2 YY1 SLC30A9 ZNF213 ZNF302 KLF13 ZNF662 GOSR1 LRRC37BP1 SH3GL1P2 SUZ12P1 SMURF2P1 CORO6 NUFIP2 TBC1D29 ENSG00000264290 LOC101927018
GH17I029638 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 36.8 -981.8 -981845 8.2 PKNOX1 CLOCK ARNT SIN3A FEZF1 ZNF2 ZBTB7B ZNF213 ZNF143 FOS GC17M029642 RNU6-920P CORO6 SUPT6H NUFIP2 ENSG00000264577 SH3GL1P2 GOSR1 PHF12 ENSG00000265908
GH17I031007 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE 33.8 +384.5 384546 2.3 HDGF PKNOX1 SIN3A GLI4 ZNF2 ZNF121 GLIS2 RUNX3 SP3 REST NF1 ENSG00000264148 ENSG00000266865 GC17M031007 UTP6 SUZ12 GOSR1 SH3GL1P2 LRRC37BP1 SMURF2P1
GH17I030476 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 22.4 -146.7 -146749 2 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 GOSR1 ATAD5 ENSG00000264456 SH3GL1P2 RNF135 NF1 SUZ12P1 DPRXP4 TEFM CORO6
GH17I030116 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 22.3 -506.9 -506875 2.6 PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B ENSG00000265394 ENSG00000266919 GC17P030118 MIR3184 PIR49703 MIR423 NSRP1 NUFIP2 CORO6 ENSG00000264456
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SH3GL1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SH3GL1P2 Gene

Genomic Locations for SH3GL1P2 Gene
chr17:30,624,318-30,626,823
(GRCh38/hg38)
Size:
2,506 bases
Orientation:
Plus strand
chr17:28,951,336-28,953,841
(GRCh37/hg19)

Genomic View for SH3GL1P2 Gene

Genes around SH3GL1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SH3GL1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SH3GL1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3GL1P2 Gene

Proteins for SH3GL1P2 Gene

Post-translational modifications for SH3GL1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3GL1P2 Gene

Domains & Families for SH3GL1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3GL1P2 Gene

Function for SH3GL1P2 Gene

Phenotypes From GWAS Catalog for SH3GL1P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SH3GL1P2 Gene

Localization for SH3GL1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SH3GL1P2 Gene

Pathways & Interactions for SH3GL1P2 Gene

SuperPathways for SH3GL1P2 Gene

No Data Available

Interacting Proteins for SH3GL1P2 Gene

Gene Ontology (GO) - Biological Process for SH3GL1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SH3GL1P2 Gene

Drugs & Compounds for SH3GL1P2 Gene

No Compound Related Data Available

Transcripts for SH3GL1P2 Gene

mRNA/cDNA for SH3GL1P2 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SH3GL1P2 Gene

No ASD Table

Relevant External Links for SH3GL1P2 Gene

GeneLoc Exon Structure for
SH3GL1P2
ECgene alternative splicing isoforms for
SH3GL1P2

Expression for SH3GL1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SH3GL1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SH3GL1P2 Gene:

SH3GL1P2

SOURCE GeneReport for Unigene cluster for SH3GL1P2 Gene:

Hs.684860
genes like me logo Genes that share expression patterns with SH3GL1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SH3GL1P2 Gene

Orthologs for SH3GL1P2 Gene

Evolution for SH3GL1P2 Gene

ENSEMBL:
Gene Tree for SH3GL1P2 (if available)
TreeFam:
Gene Tree for SH3GL1P2 (if available)

No data available for Orthologs for SH3GL1P2 Gene

Paralogs for SH3GL1P2 Gene

No data available for Paralogs for SH3GL1P2 Gene

Variants for SH3GL1P2 Gene

Sequence variations from dbSNP and Humsavar for SH3GL1P2 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000900185 -- 30,622,358(+) T/C upstream_transcript_variant
rs1003084425 -- 30,624,472(+) G/C non_coding_transcript_variant
rs1003634663 -- 30,623,618(+) T/G upstream_transcript_variant
rs1004116861 -- 30,622,980(+) G/A upstream_transcript_variant
rs1005739532 -- 30,623,821(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SH3GL1P2 Gene

Variant ID Type Subtype PubMed ID
dgv3138n100 CNV gain 25217958
esv2715813 CNV deletion 23290073
nsv1060557 CNV gain 25217958
nsv457720 CNV loss 19166990
nsv499557 OTHER inversion 21111241
nsv515870 CNV gain 19592680
nsv7292 OTHER inversion 18451855
nsv827943 CNV gain 20364138
nsv9534 CNV gain 18304495
nsv960083 CNV duplication 23825009

Additional Variant Information for SH3GL1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SH3GL1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SH3GL1P2 Gene

Disorders for SH3GL1P2 Gene

Additional Disease Information for SH3GL1P2

No disorders were found for SH3GL1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SH3GL1P2 Gene

Publications for SH3GL1P2 Gene

  1. A novel SH3-containing human gene family preferentially expressed in the central nervous system. (PMID: 9169142) Giachino C … Migone N (Genomics 1997) 2 3 58
  2. RNF135 mutations are not present in patients with Sotos syndrome-like features. (PMID: 19291764) Visser R … Losekoot M (American journal of medical genetics. Part A 2009) 3 58

Products for SH3GL1P2 Gene

Sources for SH3GL1P2 Gene

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