Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SH3BP5-AS1 Gene

Subcategory (RNA class) for SH3BP5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SH3BP5-AS1 Gene

  • SH3BP5 Antisense RNA 1 2 3 5

External Ids for SH3BP5-AS1 Gene

Summaries for SH3BP5-AS1 Gene

GeneCards Summary for SH3BP5-AS1 Gene

SH3BP5-AS1 (SH3BP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SH3BP5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3BP5-AS1 Gene

Genomics for SH3BP5-AS1 Gene

GeneHancer (GH) Regulatory Elements for SH3BP5-AS1 Gene

Promoters and enhancers for SH3BP5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I015252 Enhancer 0.7 dbSUPER 571.9 -0.8 -841 1.6 HDAC1 MEIS2 TEAD4 ZMYM3 VEZF1 ATF7 CREM SMARCE1 L3MBTL2 BHLHE40 SH3BP5-AS1 CAPN7 COL6A4P1 RNU6-1024P EAF1-AS1 RBSN
GH03I015255 Enhancer 0.2 dbSUPER 550.8 +1.3 1342 0.5 SH3BP5-AS1 CAPN7 COL6A4P1 PIR49400 SH3BP5
GH03I015600 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 46.6 +347.4 347444 2.5 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 HACL1 BTD CCDC174 NR2C2 SH3BP5-AS1 CAPN7 ENSG00000270409 EAF1-AS1 MRPS25 COLQ
GH03I015097 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 50 -155.3 -155349 2.4 CLOCK MLX ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 GC03M015143 RBSN NR2C2 CCDC174 SH3BP5-AS1 CAPN7 ENSG00000228242 XPC MRPS25 HACL1
GH03I015267 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 39.7 +16.9 16869 6.3 HDGF HNRNPUL1 PKNOX1 ARNT SIN3A IRF4 POLR2B CBX5 ZNF207 ZNF143 SH3BP5 CCDC174 SH3BP5-AS1 CAPN7 NR2C2 RNU6-454P COL6A4P1 RNU6-1024P RBSN FGD5-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SH3BP5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SH3BP5-AS1 Gene

Genomic Locations for SH3BP5-AS1 Gene
chr3:15,254,184-15,264,498
(GRCh38/hg38)
Size:
10,315 bases
Orientation:
Plus strand
chr3:15,295,691-15,306,000
(GRCh37/hg19)

Genomic View for SH3BP5-AS1 Gene

Genes around SH3BP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SH3BP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SH3BP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3BP5-AS1 Gene

Proteins for SH3BP5-AS1 Gene

Post-translational modifications for SH3BP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3BP5-AS1 Gene

Domains & Families for SH3BP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3BP5-AS1 Gene

Function for SH3BP5-AS1 Gene

Phenotypes From GWAS Catalog for SH3BP5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SH3BP5-AS1 Gene

Localization for SH3BP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SH3BP5-AS1 Gene

Pathways & Interactions for SH3BP5-AS1 Gene

SuperPathways for SH3BP5-AS1 Gene

No Data Available

Interacting Proteins for SH3BP5-AS1 Gene

Gene Ontology (GO) - Biological Process for SH3BP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SH3BP5-AS1 Gene

Drugs & Compounds for SH3BP5-AS1 Gene

No Compound Related Data Available

Transcripts for SH3BP5-AS1 Gene

mRNA/cDNA for SH3BP5-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SH3BP5-AS1 Gene

SH3BP5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SH3BP5-AS1 Gene

No ASD Table

Relevant External Links for SH3BP5-AS1 Gene

GeneLoc Exon Structure for
SH3BP5-AS1
ECgene alternative splicing isoforms for
SH3BP5-AS1

Expression for SH3BP5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SH3BP5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SH3BP5-AS1 Gene:

Hs.745026
genes like me logo Genes that share expression patterns with SH3BP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SH3BP5-AS1 Gene

Orthologs for SH3BP5-AS1 Gene

Evolution for SH3BP5-AS1 Gene

ENSEMBL:
Gene Tree for SH3BP5-AS1 (if available)
TreeFam:
Gene Tree for SH3BP5-AS1 (if available)

No data available for Orthologs for SH3BP5-AS1 Gene

Paralogs for SH3BP5-AS1 Gene

No data available for Paralogs for SH3BP5-AS1 Gene

Variants for SH3BP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SH3BP5-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000140124 -- 15,260,004(+) A/G non_coding_transcript_variant
rs1000175717 -- 15,257,496(+) C/G non_coding_transcript_variant
rs1000508601 -- 15,258,577(+) C/T intron_variant
rs1000601531 -- 15,255,964(+) T/C/G non_coding_transcript_variant
rs1001048259 -- 15,261,350(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SH3BP5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv428413 CNV gain 18775914

Additional Variant Information for SH3BP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SH3BP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SH3BP5-AS1 Gene

Disorders for SH3BP5-AS1 Gene

Additional Disease Information for SH3BP5-AS1

No disorders were found for SH3BP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SH3BP5-AS1 Gene

Publications for SH3BP5-AS1 Gene

  1. Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence. (PMID: 22488850) Zuo L … Luo X (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2012) 3 58
  2. Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q. (PMID: 21956439) Zuo L … Luo X (Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 2012) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for SH3BP5-AS1 Gene

Sources for SH3BP5-AS1 Gene

Content
Loading form....