Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SH3BP5-AS1 Gene

Subcategory (RNA class) for SH3BP5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SH3BP5-AS1 Gene

  • SH3BP5 Antisense RNA 1 2 3 5

External Ids for SH3BP5-AS1 Gene

Summaries for SH3BP5-AS1 Gene

GeneCards Summary for SH3BP5-AS1 Gene

SH3BP5-AS1 (SH3BP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3BP5-AS1 Gene

Genomics for SH3BP5-AS1 Gene

Regulatory Elements for SH3BP5-AS1 Gene

Enhancers for SH3BP5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F014450 1.6 FANTOM5 Ensembl ENCODE 43.3 -800.9 -800886 5.0 ARID4B SIN3A FEZF1 GLI4 ZNF48 ZNF121 GLIS2 KLF7 ZNF548 FOS SH3BP5-AS1 CAPN7 ENSG00000228242 SLC6A6 ENSG00000230172 HDAC11-AS1 ENSG00000223398 C3orf20 FGD5 TMEM43
GH03F015097 1.2 ENCODE 40 -155.4 -155350 2.4 CREB3L1 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 CAPN7 SH3BP5-AS1 FGD5 ENSG00000228242 TMEM43 ENSG00000270409 FGD5-AS1 GC03M015081 RBSN
GH03F014438 1.6 FANTOM5 Ensembl ENCODE 26.8 -813.9 -813884 4.2 PKNOX1 ZNF493 FEZF1 ZNF2 ZNF121 GLIS2 KLF7 FOS ZNF263 REST SH3BP5-AS1 SLC6A6 ENSG00000228242 ENSG00000230172 ENSG00000223398 HDAC11-AS1 CAPN7 C3orf20 CCDC174 XPC
GH03F014265 1.2 Ensembl ENCODE 29 -988.5 -988489 0.2 ATF1 FOS ZNF263 ZHX2 JUNB TSHZ1 REST ZNF518A ZNF592 ZNF264 SH3BP5-AS1 CAPN7 ENSG00000228242 SLC6A6 LSM3 XPC ENSG00000255021 LOC105376958
GH03F014408 1.8 FANTOM5 Ensembl ENCODE 14.7 -841.4 -841374 8.4 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 FOS KLF13 SP3 ENSG00000230172 ENSG00000223398 HDAC11-AS1 SH3BP5-AS1 CAPN7 ENSG00000228242 C3orf20 SLC6A6 CCDC174 GC03P014418
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SH3BP5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SH3BP5-AS1 Gene

Chromosome:
3
Start:
15,254,184 bp from pter
End:
15,264,498 bp from pter
Size:
10,315 bases
Orientation:
Plus strand

Genomic View for SH3BP5-AS1 Gene

Genes around SH3BP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SH3BP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SH3BP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3BP5-AS1 Gene

Proteins for SH3BP5-AS1 Gene

Post-translational modifications for SH3BP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3BP5-AS1 Gene

Domains & Families for SH3BP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3BP5-AS1 Gene

Function for SH3BP5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SH3BP5-AS1 Gene

Localization for SH3BP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SH3BP5-AS1 Gene

Pathways & Interactions for SH3BP5-AS1 Gene

SuperPathways for SH3BP5-AS1 Gene

No Data Available

Interacting Proteins for SH3BP5-AS1 Gene

Gene Ontology (GO) - Biological Process for SH3BP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SH3BP5-AS1 Gene

Transcripts for SH3BP5-AS1 Gene

mRNA/cDNA for SH3BP5-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SH3BP5-AS1 Gene

SH3BP5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SH3BP5-AS1 Gene

No ASD Table

Relevant External Links for SH3BP5-AS1 Gene

GeneLoc Exon Structure for
SH3BP5-AS1
ECgene alternative splicing isoforms for
SH3BP5-AS1

Expression for SH3BP5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SH3BP5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SH3BP5-AS1 Gene:

Hs.745026
genes like me logo Genes that share expression patterns with SH3BP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SH3BP5-AS1 Gene

Orthologs for SH3BP5-AS1 Gene

Evolution for SH3BP5-AS1 Gene

ENSEMBL:
Gene Tree for SH3BP5-AS1 (if available)
TreeFam:
Gene Tree for SH3BP5-AS1 (if available)

No data available for Orthologs for SH3BP5-AS1 Gene

Paralogs for SH3BP5-AS1 Gene

No data available for Paralogs for SH3BP5-AS1 Gene

Variants for SH3BP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SH3BP5-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10510435 -- 15,259,194(-) AGTTA(C/T)AATGG intron-variant, nc-transcript-variant
rs10683677 -- 15,254,275(+) TTTAT(-/TAAC)TAACT nc-transcript-variant, downstream-variant-500B
rs111624351 -- 15,259,125(+) TTCAA(C/G)TACAT intron-variant, nc-transcript-variant
rs111690480 -- 15,260,188(+) CCAGG(C/G)ATGAA intron-variant, nc-transcript-variant
rs112132159 -- 15,253,455(+) AGAGT(A/G)TAATT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SH3BP5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv428413 CNV gain 18775914

Relevant External Links for SH3BP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SH3BP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SH3BP5-AS1 Gene

Disorders for SH3BP5-AS1 Gene

Relevant External Links for SH3BP5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SH3BP5-AS1

No disorders were found for SH3BP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SH3BP5-AS1 Gene

Publications for SH3BP5-AS1 Gene

  1. Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q. (PMID: 21956439) Zuo L. … Luo X. (Neuropsychopharmacology 2012) 3 64
  2. Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence. (PMID: 22488850) Zuo L. … Luo X. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2012) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SH3BP5-AS1 Gene

Sources for SH3BP5-AS1 Gene

Content
Loading form....