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Aliases for SH3BP5-AS1 Gene

Subcategory (RNA class) for SH3BP5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SH3BP5-AS1 Gene

  • SH3BP5 Antisense RNA 1 2 3

External Ids for SH3BP5-AS1 Gene

ORGUL Members for SH3BP5-AS1 Gene

Summaries for SH3BP5-AS1 Gene

GeneCards Summary for SH3BP5-AS1 Gene

SH3BP5-AS1 (SH3BP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class. Diseases associated with SH3BP5-AS1 include alcohol dependence.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3BP5-AS1 Gene

Genomics for SH3BP5-AS1 Gene

Genomic Location for SH3BP5-AS1 Gene

Start:
15,254,184 bp from pter
End:
15,264,498 bp from pter
Size:
10,315 bases
Orientation:
Plus strand

Genomic View for SH3BP5-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SH3BP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3BP5-AS1 Gene

No data available for Regulatory Elements for SH3BP5-AS1 Gene

Proteins for SH3BP5-AS1 Gene

Post-translational modifications for SH3BP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3BP5-AS1 Gene

Domains for SH3BP5-AS1 Gene

Gene Families for SH3BP5-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SH3BP5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3BP5-AS1 Gene

Function for SH3BP5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SH3BP5-AS1 Gene

Localization for SH3BP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SH3BP5-AS1 Gene

Pathways for SH3BP5-AS1 Gene

SuperPathways for SH3BP5-AS1 Gene

No Data Available

Interacting Proteins for SH3BP5-AS1 Gene

Gene Ontology (GO) - Biological Process for SH3BP5-AS1 Gene

None

No data available for Pathways by source for SH3BP5-AS1 Gene

Transcripts for SH3BP5-AS1 Gene

mRNA/cDNA for SH3BP5-AS1 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SH3BP5-AS1 Gene

SH3BP5 antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SH3BP5-AS1
    • Block miRNA regulation of SH3BP5-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SH3BP5-AS1

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SH3BP5-AS1 Gene

    No ASD Table

    Relevant External Links for SH3BP5-AS1 Gene

    GeneLoc Exon Structure for
    SH3BP5-AS1
    ECgene alternative splicing isoforms for
    SH3BP5-AS1

    Expression for SH3BP5-AS1 Gene

    mRNA expression in normal human tissues for SH3BP5-AS1 Gene

    SOURCE GeneReport for Unigene cluster for SH3BP5-AS1 Gene Hs.745026

    genes like me logo Genes that share expressions with SH3BP5-AS1: view

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SH3BP5-AS1 Gene

    Orthologs for SH3BP5-AS1 Gene

    Evolution for SH3BP5-AS1 Gene

    ENSEMBL:
    Gene Tree for SH3BP5-AS1 (if available)
    TreeFam:
    Gene Tree for SH3BP5-AS1 (if available)

    No data available for Orthologs for SH3BP5-AS1 Gene

    Paralogs for SH3BP5-AS1 Gene

    No data available for Paralogs for SH3BP5-AS1 Gene

    Variants for SH3BP5-AS1 Gene

    Sequence variations from dbSNP and Humsavar for SH3BP5-AS1 Gene

    SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
    rs2046725 -- 15,253,651(+) AAACA(A/C/G)GAGAA upstream-variant-2KB
    rs3066291 -- 15,253,649(+) GGAAA(-/CA)AGAGA upstream-variant-2KB
    rs5846859 -- 15,253,650(+) GAAAC(-/AA)GAGAA upstream-variant-2KB
    rs11923289 -- 15,253,701(+) TGACT(A/G)CCTAG upstream-variant-2KB
    rs11927261 -- 15,253,587(+) CATCC(C/T)TTTCT upstream-variant-2KB

    Relevant External Links for SH3BP5-AS1 Gene

    HapMap Linkage Disequilibrium report
    SH3BP5-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SH3BP5-AS1 Gene

    Disorders for SH3BP5-AS1 Gene

    MalaCards: The human disease database

    MalaCards: The human disease database. (1) Diseases for SH3BP5-AS1 Gene including...

    Search for SH3BP5-AS1 Gene in MalaCards »
    genes like me logo Genes that share disorders with SH3BP5-AS1: view

    No data available for UniProtKB/Swiss-Prot for SH3BP5-AS1 Gene

    Publications for SH3BP5-AS1 Gene

    1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
    2. Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q. (PMID: 21956439) Zuo L. … Luo X. (Neuropsychopharmacology 2012) 3
    3. Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence. (PMID: 22488850) Zuo L. … Luo X. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2012) 3

    Products for SH3BP5-AS1 Gene

    Sources for SH3BP5-AS1 Gene

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