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Aliases for SH3BP5-AS1 Gene

Subcategory (RNA class) for SH3BP5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SH3BP5-AS1 Gene

  • SH3BP5 Antisense RNA 1 2 3

External Ids for SH3BP5-AS1 Gene

ORGUL Members for SH3BP5-AS1 Gene

Summaries for SH3BP5-AS1 Gene

GeneCards Summary for SH3BP5-AS1 Gene

SH3BP5-AS1 (SH3BP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class. Diseases associated with SH3BP5-AS1 include alcohol dependence.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3BP5-AS1 Gene

Genomics for SH3BP5-AS1 Gene

Genomic Location for SH3BP5-AS1 Gene

Start:
15,254,184 bp from pter
End:
15,264,498 bp from pter
Size:
10,315 bases
Orientation:
Plus strand

Genomic View for SH3BP5-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SH3BP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3BP5-AS1 Gene

No data available for Regulatory Elements for SH3BP5-AS1 Gene

Proteins for SH3BP5-AS1 Gene

Post-translational modifications for SH3BP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3BP5-AS1 Gene

Domains for SH3BP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3BP5-AS1 Gene

Function for SH3BP5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SH3BP5-AS1 Gene

Localization for SH3BP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SH3BP5-AS1 Gene

Pathways for SH3BP5-AS1 Gene

SuperPathways for SH3BP5-AS1 Gene

No Data Available

Interacting Proteins for SH3BP5-AS1 Gene

Gene Ontology (GO) - Biological Process for SH3BP5-AS1 Gene

None

No data available for Pathways by source for SH3BP5-AS1 Gene

Transcripts for SH3BP5-AS1 Gene

mRNA/cDNA for SH3BP5-AS1 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SH3BP5-AS1 Gene

SH3BP5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SH3BP5-AS1 Gene

No ASD Table

Relevant External Links for SH3BP5-AS1 Gene

GeneLoc Exon Structure for
SH3BP5-AS1
ECgene alternative splicing isoforms for
SH3BP5-AS1

Expression for SH3BP5-AS1 Gene

mRNA expression in normal human tissues for SH3BP5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SH3BP5-AS1 Gene Hs.745026

genes like me logo Genes that share expressions with SH3BP5-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SH3BP5-AS1 Gene

Orthologs for SH3BP5-AS1 Gene

Evolution for SH3BP5-AS1 Gene

ENSEMBL:
Gene Tree for SH3BP5-AS1 (if available)
TreeFam:
Gene Tree for SH3BP5-AS1 (if available)

No data available for Orthologs for SH3BP5-AS1 Gene

Paralogs for SH3BP5-AS1 Gene

No data available for Paralogs for SH3BP5-AS1 Gene

Variants for SH3BP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SH3BP5-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs562575338 -- 15,253,702(+) GACTG(C/T)CTAGG upstream-variant-2KB
rs559674731 -- 15,253,493(+) GGCCA(A/C)AGTGA upstream-variant-2KB
rs547807296 -- 15,253,827(+) GACTC(C/T)GCTGT upstream-variant-2KB
rs542260725 -- 15,253,600(+) TGTAG(A/G)AGACA upstream-variant-2KB
rs527255705 -- 15,253,801(+) TTTCT(A/G)GTTAT upstream-variant-2KB

Relevant External Links for SH3BP5-AS1 Gene

HapMap Linkage Disequilibrium report
SH3BP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SH3BP5-AS1 Gene

Disorders for SH3BP5-AS1 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for SH3BP5-AS1 Gene in MalaCards »

(1) Disease for SH3BP5-AS1 Gene

genes like me logo Genes that share disorders with SH3BP5-AS1: view

No data available for OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SH3BP5-AS1 Gene

Publications for SH3BP5-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q. (PMID: 21956439) Zuo L. … Luo X. (Neuropsychopharmacology 2012) 3
  3. Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence. (PMID: 22488850) Zuo L. … Luo X. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2012) 3

Products for SH3BP5-AS1 Gene

Sources for SH3BP5-AS1 Gene

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