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Aliases for SH3BP5-AS1 Gene

Subcategory (RNA class) for SH3BP5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SH3BP5-AS1 Gene

  • SH3BP5 Antisense RNA 1 2 3 5

External Ids for SH3BP5-AS1 Gene

Summaries for SH3BP5-AS1 Gene

GeneCards Summary for SH3BP5-AS1 Gene

SH3BP5-AS1 (SH3BP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SH3BP5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3BP5-AS1 Gene

Genomics for SH3BP5-AS1 Gene

Regulatory Elements for SH3BP5-AS1 Gene

Enhancers for SH3BP5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H014450 1.8 FANTOM5 Ensembl ENCODE dbSUPER 30.5 -800.9 -800886 4 FOXA2 ARNT ARID4B SIN3A FEZF1 GLI4 ZNF121 GLIS2 FOS KLF7 SH3BP5-AS1 CCDC174 SLC6A6 CAPN7 NR2C2 ENSG00000228242 XPC ENSG00000230172 HDAC11-AS1 ENSG00000223398
GH03H014408 1.9 FANTOM5 Ensembl ENCODE dbSUPER 24 -841.4 -841374 8 HDGF PKNOX1 ATF1 ARNT SIN3A ZNF766 GATA2 ELK1 FOS ATF7 CCDC174 XPC CAPN7 SH3BP5-AS1 NR2C2 ENSG00000228242 SLC6A6 GC03P014418
GH03H015097 1.2 ENCODE 35.2 -155.4 -155350 2 MLX ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 NR2C2 CCDC174 CAPN7 SH3BP5-AS1 XPC ENSG00000228242 TMEM43 MRPS25 HACL1 FGD5
GH03H015858 1.5 FANTOM5 ENCODE 27.9 +605.7 605748 2 MLX ARNT ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF416 FOS SP3 SH3BP5-AS1 NR2C2 CAPN7 LINC00690 ENSG00000269391 CDYLP1 ENSG00000229271 METTL6 IMPDH1P8 ANKRD28
GH03H015267 1.6 Ensembl ENCODE dbSUPER 19.1 +16.9 16870 6 HNRNPUL1 HDGF PKNOX1 ARNT SIN3A CBX5 ZNF143 ZNF207 FOS JUNB CAPN7 CCDC174 SH3BP5-AS1 NR2C2 RNU6-454P SH3BP5 COL6A4P1 RNU6-1024P RBSN FGD5-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SH3BP5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SH3BP5-AS1 Gene

Chromosome:
3
Start:
15,254,184 bp from pter
End:
15,264,498 bp from pter
Size:
10,315 bases
Orientation:
Plus strand

Genomic View for SH3BP5-AS1 Gene

Genes around SH3BP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SH3BP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SH3BP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3BP5-AS1 Gene

Proteins for SH3BP5-AS1 Gene

Post-translational modifications for SH3BP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3BP5-AS1 Gene

Domains & Families for SH3BP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3BP5-AS1 Gene

Function for SH3BP5-AS1 Gene

Phenotypes From GWAS Catalog for SH3BP5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SH3BP5-AS1 Gene

Localization for SH3BP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SH3BP5-AS1 Gene

Pathways & Interactions for SH3BP5-AS1 Gene

SuperPathways for SH3BP5-AS1 Gene

No Data Available

Interacting Proteins for SH3BP5-AS1 Gene

Gene Ontology (GO) - Biological Process for SH3BP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SH3BP5-AS1 Gene

Drugs & Compounds for SH3BP5-AS1 Gene

No Compound Related Data Available

Transcripts for SH3BP5-AS1 Gene

mRNA/cDNA for SH3BP5-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SH3BP5-AS1 Gene

SH3BP5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SH3BP5-AS1 Gene

No ASD Table

Relevant External Links for SH3BP5-AS1 Gene

GeneLoc Exon Structure for
SH3BP5-AS1
ECgene alternative splicing isoforms for
SH3BP5-AS1

Expression for SH3BP5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SH3BP5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SH3BP5-AS1 Gene:

Hs.745026
genes like me logo Genes that share expression patterns with SH3BP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SH3BP5-AS1 Gene

Orthologs for SH3BP5-AS1 Gene

Evolution for SH3BP5-AS1 Gene

ENSEMBL:
Gene Tree for SH3BP5-AS1 (if available)
TreeFam:
Gene Tree for SH3BP5-AS1 (if available)

No data available for Orthologs for SH3BP5-AS1 Gene

Paralogs for SH3BP5-AS1 Gene

No data available for Paralogs for SH3BP5-AS1 Gene

Variants for SH3BP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SH3BP5-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000140124 -- 15,260,004(+) GGCTC(A/G)CCCAG intron-variant, nc-transcript-variant
rs1000175717 -- 15,257,496(+) CATAT(C/G)CCAAA intron-variant, nc-transcript-variant
rs1000508601 -- 15,258,577(+) GTATA(C/T)TTTGA intron-variant
rs1000601531 -- 15,255,964(+) GAAAC(G/T)TCATT nc-transcript-variant, utr-variant-3-prime
rs1001048259 -- 15,261,350(+) GAGCC(C/T)AGGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SH3BP5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv428413 CNV gain 18775914

Relevant External Links for SH3BP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SH3BP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SH3BP5-AS1 Gene

Disorders for SH3BP5-AS1 Gene

Relevant External Links for SH3BP5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SH3BP5-AS1

No disorders were found for SH3BP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SH3BP5-AS1 Gene

Publications for SH3BP5-AS1 Gene

  1. Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence. (PMID: 22488850) Zuo L … Luo X (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2012) 3 60
  2. Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q. (PMID: 21956439) Zuo L … Luo X (Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 2012) 3 60
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for SH3BP5-AS1 Gene

Sources for SH3BP5-AS1 Gene

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