SH3BGRL Gene
protein-coding GIFtS : 56
GCID: GC0X P080457
SH3 domain binding glutamic acid-rich protein like
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Aliasesfor SH3BGRL gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases SH3 Domain Binding Glutamic Acid-Rich Protein Like 1 2 SH3BGR2 5 MGC1174021 SH3 Domain-Binding Glutamic Acid-Rich-Like Protein2 SH3-Binding Domain Glutamic Acid-Rich Protein Like2
Export aliases for SH3BGRL gene to outside databases Previous GC identifers: GC0XP076003 GC0XP077419 GC0XP078498 GC0XP079213 GC0XP080263 GC0XP074037
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Summariesfor SH3BGRL gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Gene Wiki entry for SH3BGRL
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Genomic Viewsfor SH3BGRL gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000023.10 NC_018934.1 NT_011651.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SH3BGRL gene promoter: HOXA9B HOXA9 RP58 C/EBPbeta FOXO3 FOXO3b Meis-1b FOXO3a RSRFC4 Meis-1 Other transcription factors Search SABiosciences Chromatin IP Primers for SH3BGRL Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SH3BGRL
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: Xq13.3 Ensembl cytogenetic band: Xq21.1 HGNC cytogenetic band: Xq13.3 SH3BGRL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XP080457: view genomic region
(about GC identifiers )
Start:
80,457,303 bp from pter
End:
80,554,046 bp from pter
Size:
96,744 bases
Orientation:
plus strand
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Proteinsfor SH3BGRL gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SH3L1_HUMAN, O75368 (See
protein sequence )Recommended Name: SH3 domain-binding glutamic acid-rich-like protein Size : 114 amino acids; 12774 Da
2 PDB 3D structures from and Proteopedia for SH3BGRL :1U6T (3D)
  1WRY (3D)
 
Secondary accessions : Q3SYL1 Q5JT50 Q6FIE8 Q9H0N8Explore the universe of human proteins at neXtProt for SH3BGRL: NX_O75368 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O75368 SH3BGRL Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_003013.1 ENSEMBL proteins: ENSP00000362308 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
SH3BGRL for ontologies About GeneDecksing SH3BGRL Antibody Products: Assay Products for SH3BGRL:
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Protein
Domains / Familiesfor SH3BGRL gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SH3BGRL for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O75368 ProtoNet protein and cluster: O75368
1 Blocks protein family : IPB006993 SH3-binding UniProtKB/Swiss-Prot: SH3L1_HUMAN, O75368 Similarity : Belongs to the SH3BGR family
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Functionfor SH3BGRL gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: Genatlas biochemistry entry for SH3BGRL : SH3 domain binding,glutamic acid protein-like,widely expressed Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SH3BGRL (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SH3BGRLOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SH3BGRL (NM_003022 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SH3BGRL Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SH3BGRL
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SH3BGRL
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
SH3BGRL for ontologies About GeneDecksing
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Pathways & Interactionsfor SH3BGRL gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 EGFR1 Signaling Pathway
1 BioSystems Pathway for SH3BGRL Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SH3BGRL STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)5 Interacting proteins for SH3BGRL (O75368 2 , 3 ENSP00000362308 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor SH3BGRL gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SH3BGRL Search CenterWatch for drugs/clinical trials and news about SH3BGRL / SH3L1
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Transcriptsfor SH3BGRL gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SH3BGRL gene: NM_003022.2 Unigene Cluster for SH3BGRL:
SH3 domain binding glutamic acid-rich protein like Hs.108029 [show with all ESTs ] Unigene Representative Sequence: NM_003022 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000373212 (uc004eef.3 uc011mqs.2 uc010nml.3 uc010nmm.3 uc010nmn.3 )ENST00000481106 ENST00000463546 ENST00000474113 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SH3BGRL (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SH3BGRLOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SH3BGRL (NM_003022 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SH3BGRL Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SH3BGRL
Additional cDNA sequence: AF042081.1 AK024892.1 AK129610.1 AK309350.1 AK309351.1 AK309352.1 AK310011.1 AK310155.1 AK315897.1 AL136718.1 BC016709.1 BC103762.1 CR533478.1
22 DOTS entries : DT.80101740 DT.101981144
DT.100845614 DT.100845613 DT.121321260 DT.100845612 DT.99956343 DT.100845611 DT.87017199 DT.100845628 DT.95117451 DT.121321192 DT.121321250 DT.91770810 DT.100701582 DT.100845608 DT.121321196 DT.121321203 DT.121321282 DT.121321290 DT.91770798 DT.99979017 24/564 AceView cDNA sequences (see all 564 ):
AI589471 AA034026 AI041371 AW188906 AA233655 BQ899237 AI805736 BP349835 BQ717246 BI792957 BP342128 CA449722 CR615275 AI336777 AI434645 W19682 AI185768 AA854450 BU072130 BP337625 AW515435 AI937153 BU631298 AW591665 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for SH3BGRL (see all 7 ) About this scheme ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c · 9d · 9e SP1 :         -   -   -   -           -             SP2 :             -   -   -         -             SP3 :         -   -   -   -   -         -             SP4 :                 -         -             SP5 :         -   -   -   -   -     -     -            
ECgene alternative splicing isoforms for SH3BGRL
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Expression for SH3BGRL gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SH3BGRL expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AGATTCAAAC
About this image SH3BGRL expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See SH3BGRL Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SH3BGRL SOURCE GeneReport for Unigene cluster: Hs.108029 UniProtKB/Swiss-Prot: SH3L1_HUMAN, O75368 Tissue specificity : Ubiquitous SABiosciences Custom PCR Arrays for SH3BGRL Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SH3BGRLBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SH3BGRL QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SH3BGRL QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SH3BGRL In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SH3BGRL
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Orthologsfor SH3BGRL gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for SH3BGRL gene from 6/16 species (see all 16 ) About this table
ENSEMBL Gene Tree for SH3BGRL (if available)TreeFam Gene Tree for SH3BGRL (if available)
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Paralogsfor SH3BGRL gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SH3BGRL gene SH3BGRL2 2 SH3BGR 2 SH3BGRL3 2 3 SIMAP similar genes for SH3BGRL using alignment to 2 protein entries: SH3L1_HUMAN (see all proteins ):SH3BGRL2 SH3BGR SH3BGRL3
SH3BGRL for paralogs About GeneDecksing
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Genomic Variantsfor SH3BGRL gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr X pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SH3BGRL (80457303 - 80554046 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for SH3BGRL: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SH3BGRL
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Disorders
/ Diseasesfor SH3BGRL gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SH3BGRL for disorders About GeneDecksing
OMIM gene information: 300190
OMIM disorders : --3 diseases for SH3BGRL : About MalaCards down syndrome endocarditis obesity 1 disease from the University of Copenhagen DISEASES database for SH3BGRL :Down syndrome Human Genome Epidemiology (HuGE) Navigator: SH3BGRL (1 document)Export disorders for SH3BGRL gene to outside databases
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Publicationsfor SH3BGRL gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SH3BGRL gene, integrated from 9 sources (see all 19 ): (articles sorted by number of sources associating them with SH3BGRL) Utopia : connect your pdf to the dynamic world of online information
Identification and characterization of a new human gene encoding a small protein with high homology to the proline-rich region of the SH3BGR gene. (PubMed id 9642120) 1 , 2 , 3, 9 Egeo A.... Scartezzini P. (1998) The DNA sequence of the human X chromosome. (PubMed id 15772651) 1 , 2 Ross M.T.... Bentley D.R. (2005) Crystal structure of human SH3BGRL protein: the first structure of the human SH3BGR family representing a novel class of thioredoxin fold proteins. (PubMed id 16080146) 1 , 2 Yin L.... Wang D.C. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166) 1 , 2 Wiemann S.... Poustka A. (2001) A census of human soluble protein complexes. (PubMed id 22939629) 1 Havugimana P.C....Emili A. (2012) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Use of genome-wide expression data to mine the ' Gray Zone' of GWA studies leads to novel candidate obesity genes. (PubMed id 20532202) 1 Naukkarinen J....Peltonen L. (2010) The suppression of SH3BGRL is important for v-Rel-mediated transformation. (PubMed id 16186799) 1 Majid S.M....Bose H.R. (2006)
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External Searches for SH3BGRL gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SH3BGRL gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SH3BGRL gene
(According to HUGE )
About This Section --
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Specialized Databases showing SH3BGRL gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SH3BGRL Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SH3BGRL gene: Search GeneIP for patents involving SH3BGRL GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SH3BGRL gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SH3BGRL OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SH3BGRL OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SH3BGRL OriGene Protein Over-expression Lysate for SH3BGRL Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SH3BGRL OriGene 3'-UTR Clone for SH3BGRL OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SH3BGRL OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SH3BGRL Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for SH3BGRL OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SH3BGRL OriGene Custom Protein Services for SH3BGRL OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SH3BGRL QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SH3BGRL QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SH3BGRL QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SH3BGRL QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SH3BGRL QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SH3BGRL
Search Tocris compounds for SH3BGRL
SH3BGRL Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SH3BGRL
Search ThermoFisher Antibodies for SH3BGRL
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SH3BGRL
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Aliases for SH3BGRL
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Disorders / Diseases for SH3BGRL
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Expression for SH3BGRL
Function for SH3BGRL
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