Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SH2D4B Gene

Aliases for SH2D4B Gene

  • SH2 Domain Containing 4B 2 3

External Ids for SH2D4B Gene

Summaries for SH2D4B Gene

GeneCards Summary for SH2D4B Gene

SH2D4B (SH2 Domain Containing 4B) is a Protein Coding gene. Diseases associated with SH2D4B include lymphocytic vasculitis. An important paralog of this gene is SH2D2A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH2D4B Gene

Genomics for SH2D4B Gene

Genomic Location for SH2D4B Gene

Start:
80,537,902 bp from pter
End:
80,646,560 bp from pter
Size:
108,659 bases
Orientation:
Plus strand

Genomic View for SH2D4B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SH2D4B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH2D4B Gene

Regulatory Elements for SH2D4B Gene

Proteins for SH2D4B Gene

  • Protein details for SH2D4B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SQS7-SH24B_HUMAN
    Recommended name:
    SH2 domain-containing protein 4B
    Protein Accession:
    Q5SQS7
    Secondary Accessions:
    • Q5SQS5
    • Q6ZVW9
    • Q6ZVZ3

    Protein attributes for SH2D4B Gene

    Size:
    431 amino acids
    Molecular mass:
    51232 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SH2D4B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SH2D4B Gene

Proteomics data for SH2D4B Gene at MOPED

Post-translational modifications for SH2D4B Gene

No Post-translational modifications

Other Protein References for SH2D4B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SH2D4B Gene

Domains for SH2D4B Gene

Gene Families for SH2D4B Gene

HGNC:
  • SH2D :SH2 domain containing

Protein Domains for SH2D4B Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for SH2D4B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5SQS7

UniProtKB/Swiss-Prot:

SH24B_HUMAN
Domain:
  • Contains 1 SH2 domain.:
    • Q5SQS7
genes like me logo Genes that share domains with SH2D4B: view

Function for SH2D4B Gene

Phenotypes for SH2D4B Gene

genes like me logo Genes that share phenotypes with SH2D4B: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SH2D4B Gene

Localization for SH2D4B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SH2D4B Gene COMPARTMENTS Subcellular localization image for SH2D4B gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SH2D4B Gene

Pathways for SH2D4B Gene

SuperPathways for SH2D4B Gene

No Data Available

Interacting Proteins for SH2D4B Gene

Gene Ontology (GO) - Biological Process for SH2D4B Gene

None

No data available for Pathways by source for SH2D4B Gene

Compounds for SH2D4B Gene

(6) Novoseek inferred chemical compound relationships for SH2D4B Gene

Compound -log(P) Hits PubMed IDs
phosphotyrosine 73 4
tyrosine 69.8 17
phosphatidylinositol 62.8 3
inositol 19 1
calcium 0 1
genes like me logo Genes that share compounds with SH2D4B: view

Transcripts for SH2D4B Gene

mRNA/cDNA for SH2D4B Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SH2D4B Gene

SH2 domain containing 4B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SH2D4B Gene

No ASD Table

Relevant External Links for SH2D4B Gene

GeneLoc Exon Structure for
SH2D4B
ECgene alternative splicing isoforms for
SH2D4B

Expression for SH2D4B Gene

mRNA expression in normal human tissues for SH2D4B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SH2D4B Gene

This gene is overexpressed in Testis (8.1) and Whole Blood (5.9).

SOURCE GeneReport for Unigene cluster for SH2D4B Gene Hs.147643

genes like me logo Genes that share expressions with SH2D4B: view

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for SH2D4B Gene

Orthologs for SH2D4B Gene

This gene was present in the common ancestor of animals.

Orthologs for SH2D4B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SH2D4B 35
  • 99.35 (n)
  • 98.88 (a)
SH2D4B 36
  • 77 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SH2D4B 35
  • 91.5 (n)
  • 93 (a)
SH2D4B 36
  • 67 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SH2D4B 35
  • 90.48 (n)
  • 93.28 (a)
SH2D4B 36
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sh2d4b 35
  • 85.77 (n)
  • 90.85 (a)
Sh2d4b 16
Sh2d4b 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SH2D4B 36
  • 64 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SH2D4B 36
  • 54 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sh2d4b 35
  • 85.57 (n)
  • 91.16 (a)
chicken
(Gallus gallus)
Aves SH2D4B 35
  • 68.4 (n)
  • 69.33 (a)
SH2D4B 36
  • 56 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SH2D4B 36
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sh2d4b 35
  • 64.29 (n)
  • 66.15 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100330227 35
  • 63.14 (n)
  • 60.9 (a)
sh2d4b 36
  • 42 (a)
OneToMany
SH2D4B (1 of 2) 36
  • 43 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F13B12.6 36
  • 17 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 17 (a)
OneToMany
Species with no ortholog for SH2D4B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SH2D4B Gene

ENSEMBL:
Gene Tree for SH2D4B (if available)
TreeFam:
Gene Tree for SH2D4B (if available)

Paralogs for SH2D4B Gene

Paralogs for SH2D4B Gene

Selected SIMAP similar genes for SH2D4B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SH2D4B: view

Variants for SH2D4B Gene

Sequence variations from dbSNP and Humsavar for SH2D4B Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs769380 -- 80,633,832(+) TTAGG(G/T)GCTTA intron-variant
rs1573973 -- 80,574,655(+) GAGTT(A/G)TAAAT intron-variant
rs1870136 -- 80,547,361(-) AGGTT(A/G)AGGAA intron-variant
rs1878037 -- 80,627,831(-) AGGAA(C/G/T)ATTTT intron-variant
rs1878038 -- 80,627,792(-) TTTCT(C/T)Cttcc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SH2D4B Gene

Variant ID Type Subtype PubMed ID
nsv831924 CNV Loss 17160897
nsv469837 CNV Loss 16826518
nsv7354 CNV Loss 18451855
nsv470967 CNV Loss 18288195
esv2669158 CNV Deletion 23128226
esv2738807 CNV Deletion 23290073
esv1010104 CNV Insertion 20482838
esv269663 CNV Insertion 20981092
nsv469860 CNV Complex 16826518

Relevant External Links for SH2D4B Gene

HapMap Linkage Disequilibrium report
SH2D4B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SH2D4B Gene

Disorders for SH2D4B Gene

(1) MalaCards Diseases for SH2D4B Gene

Search for SH2D4B Gene in MalaCards »

(1) Novoseek inferred disease relationships for SH2D4B Gene

Disease -log(P) Hits PubMed IDs
leukemia 0 1

Relevant External Links for SH2D4B

Genetic Association Database (GAD)
SH2D4B
Human Genome Epidemiology (HuGE) Navigator
SH2D4B
genes like me logo Genes that share disorders with SH2D4B: view

No data available for UniProtKB/Swiss-Prot for SH2D4B Gene

Publications for SH2D4B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  3. Identification of novel germline polymorphisms governing capecitabine sensitivity. (PMID: 22864933) O'Donnell P.H. … Dolan M.E. (Cancer 2012) 3
  4. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 4
  5. Association of phosphorylated insulin-like growth factor-I receptor with the SH2 domains of phosphatidylinositol 3-kinase p85. (PMID: 1317864) Yamamoto K. … Lapetina E.G. (J. Biol. Chem. 1992) 23

Products for SH2D4B Gene

Sources for SH2D4B Gene

Back to Top

Content