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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SGTB Gene

protein-coding   GIFtS: 44
GCID: GC05M065000

small glutamine-rich tetratricopeptide repeat (TPR)-containing,...

  Search for SGTB
in our new
 Human Malady Compendium 
Biological research products
for SGTB
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Small Glutamine-Rich Tetratricopeptide Repeat (TPR)-Containing, Beta1 2     Beta-SGT3
Small Glutamine-Rich Protein With Tetratricopeptide Repeats 22 3     Small Glutamine Rich Protein With Tetratricopeptide Repeats 22
SGT22 3     Small Glutamine-Rich Tetratricopeptide Repeat-Containing Protein Beta2
FLJ390021     Beta-SGT3
Sgt21     

External Ids:    HGNC: 235671   Entrez Gene: 545572   Ensembl: ENSG000001978607   UniProtKB: Q96EQ03   

Export aliases for SGTB gene to outside databases

Previous GC identifers: GC05M064980 GC05M064979 GC05M061917


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: SGTB_HUMAN, Q96EQ0
Function: Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NC_018916.1  NT_006713.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SGTB gene promoter:
         GR   STAT1   Lmo2   STAT1beta   STAT1alpha   E47   Max   GR-alpha   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSGTB promoter sequence
   Search SABiosciences Chromatin IP Primers for SGTB

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SGTB


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q12.3   Ensembl cytogenetic band:  5q12.3   HGNC cytogenetic band: 5q12.3

SGTB Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SGTB gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M065000:  view genomic region     (about GC identifiers)

Start:
64,961,755 bp from pter      End:
65,018,862 bp from pter
Size:
57,108 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SGTB_HUMAN, Q96EQ0 (See protein sequence)
Recommended Name: Small glutamine-rich tetratricopeptide repeat-containing protein beta  
Size: 304 amino acids; 33429 Da
Subunit: Homooligomerize (By similarity)

Explore the universe of human proteins at neXtProt for SGTB: NX_Q96EQ0

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96EQ0

  • SGTB Protein expression data from MOPED and PaxDb:    About this image 
    SGTB Protein Expression
    REFSEQ proteins: NP_061945.1  
    ENSEMBL proteins: 
     ENSP00000370395   ENSP00000421447  

    Human Recombinant Protein Products for SGTB: 
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    Browse Proteins at Uscn


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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    SGTB for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR001440 TPR-1
     IPR011990 TPR-like_helical
     IPR013026 TPR-contain_dom
     IPR019734 TPR_repeat

    Graphical View of Domain Structure for InterPro Entry Q96EQ0

    ProtoNet protein and cluster: Q96EQ0

    UniProtKB/Swiss-Prot: SGTB_HUMAN, Q96EQ0
    Similarity: Belongs to the SGT family
    Similarity: Contains 4 TPR repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: SGTB_HUMAN, Q96EQ0
    Function: Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity (By similarity)

    Animal Models:

       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for SGTB 

    miRNA
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    hsa-miR-323-3p hsa-miR-579 hsa-miR-300 hsa-miR-106a hsa-miR-3138 hsa-miR-519a hsa-miR-3142 hsa-miR-629*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SGTB (see all 7)
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    OriGene siRNA: SGTB
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    Clone
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SGTB


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SGTB

    STRING Interaction Network Preview (showing 5 interactants - click image to see 8)

    5/10 Interacting proteins for SGTB (Q96EQ02, 3 ENSP000003703954) via UniProtKB, MINT, STRING, and/or I2D (see all 10)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EFEMP2O959672, 3, ENSP000003099534MINT-66443 I2D: score=4 STRING: ENSP00000309953
    RAI2Q9Y5P32, 3, ENSP000003334564MINT-67571 I2D: score=4 STRING: ENSP00000333456
    TMPOP421663, ENSP000002667324I2D: score=1 STRING: ENSP00000266732
    PPIBP232843I2D: score=1 
    SERPINI2O758303I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SGTB
    Search CenterWatch for drugs/clinical trials and news about SGTB 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SGTB gene: 
    NM_019072.2  

    Unigene Cluster for SGTB:

    Small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
    Hs.482301  [show with all ESTs]
    Unigene Representative Sequence: NM_019072
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000381007(uc003jud.3) ENST00000506816

    miRNA
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    8/70 QIAGEN miScript miRNA Assays for microRNAs that regulate SGTB (see all 70):
    hsa-miR-323-3p hsa-miR-579 hsa-miR-300 hsa-miR-106a hsa-miR-3138 hsa-miR-519a hsa-miR-3142 hsa-miR-629*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SGTB (see all 7)
    OriGene shRNA RFP: SGTB
    OriGene siRNA: SGTB
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    Sirion Biotech Custom design and validation of potent shRNA sequences against SGTB 
    Clone
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SGTB
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SGTB

    Additional cDNA sequence: 

    AF075050.1 AF368281.1 AK096321.1 BC012044.1 

    5 DOTS entries:

    DT.113866  DT.40287888  DT.95172533  DT.305397  DT.120812722 

    21 AceView cDNA sequences:

    AL713334 BC012044 AI280930 BG214707 NM_019072 AF075050 AK096321 AI420520 
    AF368281 BF978355 CB988961 BF984153 BE392704 BE671098 BG209490 BF984266 
    AA308206 AW951938 H41196 BE646024 BI049110 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SGTB expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AAATAATGGG
    SGTB Expression
    About this image

    SGTB expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    EyeRetinaEye
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See SGTB Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SGTB

    SOURCE GeneReport for Unigene cluster: Hs.482301
        SABiosciences Custom PCR Arrays for SGTB
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SGTB

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for SGTB gene from 10/29 species (see all 29)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Sgtb1 , 5 small glutamine-rich tetratricopeptide repeat (TPR)-containing, more1, 5 87.72(n)1
    96.38(a)1
      13 (56.23 cM)5
    2185441  NM_144838.11  NP_659087.11 
     1041097415 
    chicken
    (Gallus gallus)
    Aves SGTB1 small glutamine-rich tetratricopeptide repeat (TPR)-containing, more 80.37(n)
    85.86(a)
      427166  NM_001031418.1  NP_001026589.1 
    lizard
    (Anolis carolinensis)
    Reptilia SGTB6
    --
    85(a)
    1 ↔ 1
    2(10761255-10775456)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.132922 Xenopus laevis transcribed sequence with moderate similarity more 75(n)    BJ067633.1 
    zebrafish
    (Danio rerio)
    Actinopterygii sgta1 small glutamine-rich tetratricopeptide repeat (TPR)-containing, more 68.53(n)
    73.68(a)
      431772  NM_001002225.1  NP_001002225.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Sgt1 small glutamine-rich tetratricopeptide containing protein 48.39(n)
    37.45(a)
      35052  NM_135998.2  NP_609842.1 
    worm
    (Caenorhabditis elegans)
    Secernentea sgt-16
    Small Glutamine-rich Tetratrico repeat protein fam...
    32(a)
    1 → many
    II(4902283-4903791)
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes TAH1(YCR060W)4
    SGT21
    HSP90 cofactor; interacts with Hsp82p, Pih1p, Rvb1 more4
    Sgt2p1
    46.74(n)1
    36.09(a)1
      3(224399-224734)4
    8541681  NP_014649.11  8504244 
     NP_009986.14 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons TPR86
    TPR36
    tetratricopeptide repeat-containing protein
    21(a)
    15(a)
    many → 1
    possible ortholog
    4(5252811-5255200)
    1(1106428-1108715)
    rice
    (Oryza sativa)
    Liliopsida --
    --
    expressed protein
    tetratricopeptide repeat domain containing protein...
    23(a)
    16(a)
    many → 1
    possible ortholog
    4(35125144-35130958)
    12(25494698-25499127)


    ENSEMBL Gene Tree for SGTB (if available)
    TreeFam Gene Tree for SGTB (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SGTB gene
    STUB12  TTC122  SGTA2  
    5 SIMAP similar genes for SGTB using alignment to 2 protein entries:     SGTB_HUMAN (see all proteins):
    H_YN88E09.1    SGTA    STIP1    PPP5C    SUGT1P3

    SGTB for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/873 NCBI SNPs in SGTB are shown (see all 873    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1924718071,2
    --64961267(+) GTAATG/TGTTTG 5 -- ut31 ds50010--------
    rs1838974001,2
    --64961584(+) GAAAGC/TTGAGG 5 -- ds5001 ut310--------
    rs1881779891,2
    --64961766(+) TTTCAA/GTGCAT 5 -- ut310--------
    rs1478759761,2
    C--64962234(+) GCATA-/TAT   
      AGAACC
    TGTTC
    5 -- ds5001 ut310--------
    rs1408211401,2
    --64962467(+) TTGAAA/GTAGCT 1 -- ut310--------
    rs1813999731,2
    --64962599(+) AGCAAA/GGAAAT 1 -- ut310--------
    rs1501313041,2
    --64962692(+) ATGAAA/GACATT 1 -- ut310--------
    rs727644831,2
    C--64962816(+) ATATTA/GTTTCT 1 -- ut313Minor allele frequency- G:0.21NA EA 242
    rs1161170191,2
    C,F--64962855(+) GGAAGT/CTATCT 1 -- ut311Minor allele frequency- C:0.04WA 118
    rs1845575851,2
    --64962863(+) TCTGGA/GCCTGT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for SGTB (64961755 - 65018862 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for SGTB
         1 CNV: 51723

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SGTB
    DNA2.0 Custom Variant and Variant Library Synthesis for SGTB

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SGTB gene, integrated from 9 sources (see all 13):
    (articles sorted by number of sources associating them with SGTB)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    4. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    5. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    6. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
    7. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    8. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    9. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (2008)
    10. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 54557 HGNC: 23567 AceView: SGTB Ensembl:ENSG00000197860 euGenes: HUgn54557
    ECgene: SGTB H-InvDB: SGTB

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SGTB Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SGTB gene:
    Search GeneIP for patents involving SGTB

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
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    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 13 May 2013

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