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Aliases for SGMS1-AS1 Gene

Subcategory (RNA class) for SGMS1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SGMS1-AS1 Gene

  • SGMS1 Antisense RNA 1 2 3 5

External Ids for SGMS1-AS1 Gene

Previous GeneCards Identifiers for SGMS1-AS1 Gene

  • GC00U935621

Summaries for SGMS1-AS1 Gene

GeneCards Summary for SGMS1-AS1 Gene

SGMS1-AS1 (SGMS1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SGMS1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SGMS1-AS1 Gene

Genomics for SGMS1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SGMS1-AS1 Gene

Promoters and enhancers for SGMS1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I050618 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.6 -2.6 -2565 8.4 CLOCK ZFP64 DMAP1 YY1 ZNF213 ZNF143 ZNF263 SP3 ZNF610 GLIS1 GC10P050620 GC10P050623 SGMS1 LINC00843 AGAP6 BEND3P1 WASHC2A RNA5SP317 SGMS1-AS1 RNU7-107P
GH10I050549 Enhancer 1.4 Ensembl ENCODE dbSUPER 22 -74.6 -74579 1.7 HDGF PKNOX1 SMAD1 ARNT YBX1 ZNF766 CBX5 E2F8 REST ZNF592 SGMS1-AS1 SGMS1 LINC00843 SHQ1P1 RNU7-107P AGAP6 PARG BEND3P1 GC10P050546 GC10M050591
GH10I050067 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 12.1 -556.9 -556920 1.7 HDGF PKNOX1 CLOCK MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF213 WASHC2A FAM21EP LINC00843 ERCC6 AGAP6 PARG RNA5SP317 SGMS1-AS1 SGMS1 BEND3P1
GH10I050653 Enhancer 0.9 Ensembl ENCODE 18.8 +29.0 29017 1.9 CTCF FOXA2 TEAD4 RAD21 RFX5 ZNF316 ZNF766 FOXK2 ZNF143 SMC3 BEND3P1 SGMS1-AS1 SHQ1P1 SGMS1
GH10I050575 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.4 -46.6 -46615 6.2 HDGF PKNOX1 SMAD1 FOXA2 ARNT NEUROD1 POLR2B ZNF766 CBX5 E2F8 SGMS1 SGMS1-AS1 SHQ1P1 BEND3P1 ASAH2B GC10M050591 GC10P050546
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SGMS1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SGMS1-AS1 Gene

Genomic Locations for SGMS1-AS1 Gene
chr10:50,624,951-50,641,451
(GRCh38/hg38)
Size:
16,501 bases
Orientation:
Plus strand

Genomic View for SGMS1-AS1 Gene

Genes around SGMS1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SGMS1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SGMS1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SGMS1-AS1 Gene

Proteins for SGMS1-AS1 Gene

Post-translational modifications for SGMS1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SGMS1-AS1 Gene

Domains & Families for SGMS1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SGMS1-AS1 Gene

Function for SGMS1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SGMS1-AS1 Gene

Localization for SGMS1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SGMS1-AS1 Gene

Pathways & Interactions for SGMS1-AS1 Gene

SuperPathways for SGMS1-AS1 Gene

No Data Available

Interacting Proteins for SGMS1-AS1 Gene

Gene Ontology (GO) - Biological Process for SGMS1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SGMS1-AS1 Gene

Drugs & Compounds for SGMS1-AS1 Gene

No Compound Related Data Available

Transcripts for SGMS1-AS1 Gene

mRNA/cDNA for SGMS1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SGMS1-AS1 Gene

No ASD Table

Relevant External Links for SGMS1-AS1 Gene

GeneLoc Exon Structure for
SGMS1-AS1
ECgene alternative splicing isoforms for
SGMS1-AS1

Expression for SGMS1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SGMS1-AS1 Gene

Orthologs for SGMS1-AS1 Gene

Evolution for SGMS1-AS1 Gene

ENSEMBL:
Gene Tree for SGMS1-AS1 (if available)
TreeFam:
Gene Tree for SGMS1-AS1 (if available)

No data available for Orthologs for SGMS1-AS1 Gene

Paralogs for SGMS1-AS1 Gene

No data available for Paralogs for SGMS1-AS1 Gene

Variants for SGMS1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SGMS1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000116389 -- 50,627,865(+) A/G intron_variant
rs1000274505 -- 50,625,639(+) A/T intron_variant
rs1000870849 -- 50,626,836(+) C/A intron_variant
rs1001508420 -- 50,623,966(+) G/A upstream_transcript_variant
rs1001609570 -- 50,629,075(+) A/T non_coding_transcript_variant

Additional Variant Information for SGMS1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SGMS1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SGMS1-AS1 Gene

Disorders for SGMS1-AS1 Gene

Additional Disease Information for SGMS1-AS1

No disorders were found for SGMS1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SGMS1-AS1 Gene

Publications for SGMS1-AS1 Gene

  1. Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs. (PMID: 24495672) Lin ST … Fu YH (Translational neurodegeneration 2014) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SGMS1-AS1 Gene

Sources for SGMS1-AS1 Gene

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