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Aliases for SGMS1-AS1 Gene

Subcategory (RNA class) for SGMS1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SGMS1-AS1 Gene

  • SGMS1 Antisense RNA 1 2 3 5

External Ids for SGMS1-AS1 Gene

Previous GeneCards Identifiers for SGMS1-AS1 Gene

  • GC00U935621

Summaries for SGMS1-AS1 Gene

GeneCards Summary for SGMS1-AS1 Gene

SGMS1-AS1 (SGMS1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SGMS1-AS1 Gene

Genomics for SGMS1-AS1 Gene

Regulatory Elements for SGMS1-AS1 Gene

Enhancers for SGMS1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F050067 0.2 ENCODE 22.6 -556.9 -556860 1.5 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF416 ZNF143 ZNF207 LINC00843 ERCC6 WASHC2A PGBD3 PARG AGAP6 SGMS1-AS1 RNA5SP317 MAPK6PS6 PGGT1BP1
GH10F050652 0.7 Ensembl ENCODE 18.8 +28.9 28910 2.1 CTCF ZNF654 NR2F1 MAFG REST RAD21 RFX5 ZNF316 FOXK2 IKZF1 SGMS1-AS1 SHQ1P1 SGMS1 BEND3P1
GH10F050560 0.5 Ensembl ENCODE 12.7 -63.3 -63299 1.7 CTCF TBL1XR1 RAD21 ZNF316 SMC3 SCRT1 ZNF654 TRIM22 REST ZEB2 SGMS1 SGMS1-AS1 SHQ1P1 RNU7-107P BEND3P1 GC10P050546 GC10M050591
GH10F050563 1.1 ENCODE 12.7 -60.9 -60895 1.2 ELF3 CTCF MXI1 SAP130 MAX ARID4B ZSCAN9 RAD21 RARA TEAD3 SGMS1 SGMS1-AS1 SHQ1P1 RNU7-107P BEND3P1 GC10P050546 GC10M050591
GH10F050558 0.6 Ensembl 12.7 -66.4 -66351 0.4 CHD1 BRF2 NR2F2 JUND POLR2A IKZF1 HMBOX1 CREB1 SGMS1 SGMS1-AS1 SHQ1P1 RNU7-107P GC10P050546 GC10M050591
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SGMS1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SGMS1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000354926 -1051 4601 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for SGMS1-AS1 Gene

Chromosome:
10
Start:
50,624,951 bp from pter
End:
50,641,451 bp from pter
Size:
16,501 bases
Orientation:
Plus strand

Genomic View for SGMS1-AS1 Gene

Genes around SGMS1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SGMS1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SGMS1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SGMS1-AS1 Gene

Proteins for SGMS1-AS1 Gene

Post-translational modifications for SGMS1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SGMS1-AS1 Gene

Domains & Families for SGMS1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SGMS1-AS1 Gene

Function for SGMS1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SGMS1-AS1 Gene

Localization for SGMS1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SGMS1-AS1 Gene

Pathways & Interactions for SGMS1-AS1 Gene

SuperPathways for SGMS1-AS1 Gene

No Data Available

Interacting Proteins for SGMS1-AS1 Gene

Gene Ontology (GO) - Biological Process for SGMS1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SGMS1-AS1 Gene

Transcripts for SGMS1-AS1 Gene

mRNA/cDNA for SGMS1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SGMS1-AS1 Gene

No ASD Table

Relevant External Links for SGMS1-AS1 Gene

GeneLoc Exon Structure for
SGMS1-AS1
ECgene alternative splicing isoforms for
SGMS1-AS1

Expression for SGMS1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SGMS1-AS1 Gene

Orthologs for SGMS1-AS1 Gene

Evolution for SGMS1-AS1 Gene

ENSEMBL:
Gene Tree for SGMS1-AS1 (if available)
TreeFam:
Gene Tree for SGMS1-AS1 (if available)

No data available for Orthologs for SGMS1-AS1 Gene

Paralogs for SGMS1-AS1 Gene

No data available for Paralogs for SGMS1-AS1 Gene

Variants for SGMS1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SGMS1-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10740767 -- 50,629,192(+) TTTGC(A/G)TATAA intron-variant
rs11006358 -- 50,625,787(+) GTACT(A/G)CTCTT intron-variant, upstream-variant-2KB
rs11006369 -- 50,630,746(+) ATAAC(A/T)TCACT nc-transcript-variant
rs111346741 -- 50,623,158(+) GGGGG(C/T)ATCGA intron-variant, upstream-variant-2KB
rs111587052 -- 50,630,132(+) TGCTG(A/G)GTCGT nc-transcript-variant

Relevant External Links for SGMS1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SGMS1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SGMS1-AS1 Gene

Disorders for SGMS1-AS1 Gene

Relevant External Links for SGMS1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SGMS1-AS1

No disorders were found for SGMS1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SGMS1-AS1 Gene

Publications for SGMS1-AS1 Gene

  1. Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs. (PMID: 24495672) Lin S.T. … Fu Y.H. (Transl Neurodegener 2014) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SGMS1-AS1 Gene

Sources for SGMS1-AS1 Gene

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