Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SGMS1-AS1 Gene

Subcategory (RNA class) for SGMS1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SGMS1-AS1 Gene

  • SGMS1 Antisense RNA 1 2 3 5

External Ids for SGMS1-AS1 Gene

Previous GeneCards Identifiers for SGMS1-AS1 Gene

  • GC00U935621

Summaries for SGMS1-AS1 Gene

GeneCards Summary for SGMS1-AS1 Gene

SGMS1-AS1 (SGMS1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SGMS1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SGMS1-AS1 Gene

Genomics for SGMS1-AS1 Gene

Regulatory Elements for SGMS1-AS1 Gene

Enhancers for SGMS1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H050549 1.6 Ensembl ENCODE dbSUPER 22 -74.6 -74579 1 HDGF PKNOX1 ARNT YBX1 ZNF766 CBX5 REST SMARCB1 ZNF592 MEF2D SGMS1-AS1 SGMS1 BEND3P1 LINC00843 SHQ1P1 RNU7-107P AGAP6 PARG GC10P050546 GC10M050591
GH10H050618 2 FANTOM5 Ensembl ENCODE dbSUPER 15.5 -2.6 -2566 8 ZFP64 DMAP1 YY1 ZNF143 SP3 ZNF610 GLIS1 NBN NR2C1 KDM1A AGAP6 LINC00843 BEND3P1 PARG SGMS1-AS1 RNU7-107P WASHC2A RNA5SP317 GC10P050620 GC10P050623
GH10H050653 1 Ensembl ENCODE 18.8 +29.0 29018 1 CTCF ZNF654 FOXA2 MAFG REST RAD21 NR2F2 RFX5 ZNF766 ZNF316 SGMS1-AS1 SHQ1P1 SGMS1 BEND3P1
GH10H050575 1.6 Ensembl ENCODE dbSUPER 11.4 -46.6 -46616 6 HDGF PKNOX1 FOXA2 ARNT ZNF766 CBX5 FOS ZC3H11A REST SMARCB1 SGMS1 SGMS1-AS1 SHQ1P1 BEND3P1 ASAH2B GC10M050591 GC10P050546
GH10H050554 1.5 Ensembl ENCODE dbSUPER 11.8 -69.1 -69098 2 HDGF PKNOX1 ATF1 TCF12 GATA2 ATF7 REST ZNF592 MBD2 SMARCA4 SGMS1 BEND3P1 SGMS1-AS1 SHQ1P1 RNU7-107P GC10P050546 GC10M050591
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SGMS1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SGMS1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000028018 -951 4001 DMAP1 YY1 ZNF143 SP3 ZNF610 GLIS1 NBN NR2C1 KDM1A SP7

Genomic Location for SGMS1-AS1 Gene

Chromosome:
10
Start:
50,624,951 bp from pter
End:
50,641,451 bp from pter
Size:
16,501 bases
Orientation:
Plus strand

Genomic View for SGMS1-AS1 Gene

Genes around SGMS1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SGMS1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SGMS1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SGMS1-AS1 Gene

Proteins for SGMS1-AS1 Gene

Post-translational modifications for SGMS1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SGMS1-AS1 Gene

Domains & Families for SGMS1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SGMS1-AS1 Gene

Function for SGMS1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SGMS1-AS1 Gene

Localization for SGMS1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SGMS1-AS1 Gene

Pathways & Interactions for SGMS1-AS1 Gene

SuperPathways for SGMS1-AS1 Gene

No Data Available

Interacting Proteins for SGMS1-AS1 Gene

Gene Ontology (GO) - Biological Process for SGMS1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SGMS1-AS1 Gene

Drugs & Compounds for SGMS1-AS1 Gene

No Compound Related Data Available

Transcripts for SGMS1-AS1 Gene

mRNA/cDNA for SGMS1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SGMS1-AS1 Gene

No ASD Table

Relevant External Links for SGMS1-AS1 Gene

GeneLoc Exon Structure for
SGMS1-AS1
ECgene alternative splicing isoforms for
SGMS1-AS1

Expression for SGMS1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SGMS1-AS1 Gene

Orthologs for SGMS1-AS1 Gene

Evolution for SGMS1-AS1 Gene

ENSEMBL:
Gene Tree for SGMS1-AS1 (if available)
TreeFam:
Gene Tree for SGMS1-AS1 (if available)

No data available for Orthologs for SGMS1-AS1 Gene

Paralogs for SGMS1-AS1 Gene

No data available for Paralogs for SGMS1-AS1 Gene

Variants for SGMS1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SGMS1-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000116389 -- 50,627,865(+) AAGCA(A/G)GGAGA intron-variant
rs1000274505 -- 50,625,639(+) TAATA(A/T)GCTAG intron-variant, upstream-variant-2KB
rs1000870849 -- 50,626,836(+) TGTTT(A/C)ATCAT intron-variant
rs1001508420 -- 50,623,966(+) AGCAT(A/G)CCCAG upstream-variant-2KB, utr-variant-5-prime
rs1001609570 -- 50,629,075(+) TGAAA(A/T)ACAAT nc-transcript-variant

Relevant External Links for SGMS1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SGMS1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SGMS1-AS1 Gene

Disorders for SGMS1-AS1 Gene

Relevant External Links for SGMS1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SGMS1-AS1

No disorders were found for SGMS1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SGMS1-AS1 Gene

Publications for SGMS1-AS1 Gene

  1. Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs. (PMID: 24495672) Lin ST … Fu YH (Translational neurodegeneration 2014) 2 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for SGMS1-AS1 Gene

Sources for SGMS1-AS1 Gene

Content
Loading form....