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Aliases for SGCEP Gene

Aliases for SGCEP Gene

  • Sarcoglycan Epsilon Pseudogene 3
  • AC023128.2 5

External Ids for SGCEP Gene

Previous GeneCards Identifiers for SGCEP Gene

  • GC02U900738
  • GC02M145228
  • GC02M145513

Summaries for SGCEP Gene

GeneCards Summary for SGCEP Gene

SGCEP (Sarcoglycan Epsilon Pseudogene) is a Pseudogene.

Additional gene information for SGCEP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SGCEP Gene

Genomics for SGCEP Gene

GeneHancer (GH) Regulatory Elements for SGCEP Gene

Promoters and enhancers for SGCEP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I144770 Enhancer 0.4 UCNEbase 0.4 -14.9 -14854 0.5 GC02P144776 SGCEP TEX41
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SGCEP on UCSC Golden Path with GeneCards custom track

Genomic Locations for SGCEP Gene

Genomic Locations for SGCEP Gene
chr2:144,754,509-144,756,143
(GRCh38/hg38)
Size:
1,635 bases
Orientation:
Minus strand
chr2:145,512,076-145,513,710
(GRCh37/hg19)

Genomic View for SGCEP Gene

Genes around SGCEP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SGCEP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SGCEP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SGCEP Gene

Proteins for SGCEP Gene

Post-translational modifications for SGCEP Gene

No Post-translational modifications

No data available for DME Specific Peptides for SGCEP Gene

Domains & Families for SGCEP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SGCEP Gene

Function for SGCEP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SGCEP Gene

Localization for SGCEP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SGCEP Gene

Pathways & Interactions for SGCEP Gene

SuperPathways for SGCEP Gene

No Data Available

Interacting Proteins for SGCEP Gene

Gene Ontology (GO) - Biological Process for SGCEP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SGCEP Gene

Drugs & Compounds for SGCEP Gene

No Compound Related Data Available

Transcripts for SGCEP Gene

mRNA/cDNA for SGCEP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SGCEP Gene

No ASD Table

Relevant External Links for SGCEP Gene

GeneLoc Exon Structure for
SGCEP

Expression for SGCEP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SGCEP Gene

genes like me logo Genes that share expression patterns with SGCEP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SGCEP Gene

Orthologs for SGCEP Gene

Evolution for SGCEP Gene

ENSEMBL:
Gene Tree for SGCEP (if available)
TreeFam:
Gene Tree for SGCEP (if available)

No data available for Orthologs for SGCEP Gene

Paralogs for SGCEP Gene

No data available for Paralogs for SGCEP Gene

Variants for SGCEP Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for SGCEP Gene

Disorders for SGCEP Gene

Additional Disease Information for SGCEP

Genetic Association Database
(GAD)

No disorders were found for SGCEP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SGCEP Gene

Publications for SGCEP Gene

  1. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 44 58
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  3. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PMID: 17903307) Wilk JB … O'Connor GT (BMC medical genetics 2007) 44 58

Products for SGCEP Gene

Sources for SGCEP Gene

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