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Aliases & Descriptions for SFTPD
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| COLEC7 1, 2 | | OTTHUMP00000019944 2 | | PSP-D 2, 3 | | PSPD 3 | | SFTP4 2, 3, 5 | | SP-D 1, 2, 3 |
| | | Descriptions |
|---|
| Lung surfactant protein D 3 | | collectin 7 2 | | pulmonary surfactant apoprotein 2 | | pulmonary surfactant-associated protein D 2 | | surfactant protein D 2 | | surfactant, pulmonary-associated protein D 1, 2 | | surfactant-associated protein, pulmonary 4 2 |
|
| | Search outside databases for aliases for SFTPD genePrevious GC identifers: GC10M080654 GC10M080919 GC10M081828 GC10M081362 GC10M081019 |
Summaries for SFTPD(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: SFTPD_HUMAN, P35247Function: Contributes to the lung's defense against inhaled microorganisms. May participate in the extracellular reorganization or turnover of pulmonary surfactant. Binds strongly maltose residues and to a lesser extent other alpha-glucosyl moietiesGene Wiki entry for SFTPD (Surfactant_protein_D) |
Genomic Location for SFTPD
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SFTPD gene 
Entrez Gene cytogenetic band: 10q22.2-q23.1 Ensembl cytogenetic band: 10q22.3 HGNC cytogenetic band: 10q22.2-q23.1SFTPD Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10M081687:
(about GC identifiers)
Start:
|
81,687,476 bp from pter |
End:
|
81,698,841 bp from pter |
Size:
|
11,366 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000010.9 NT_030059.12
| Proteins for SFTPD
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SFTPD_HUMAN, P35247 (See
protein sequence)Recommended Name: Pulmonary surfactant-associated protein D precursor Size: 375 amino acids; 37698 Da
Subunit: Oligomeric complex of 4 set of homotrimers
Subcellular location: Secreted, extracellular space, extracellular matrix. Secreted, extracellular space, surface film
Miscellaneous: Pulmonary surfactant consists of 90% lipid and 10% protein. There are 4 surfactant-associated proteins: 2 collagenous, carbohydrate-binding glycoproteins (SP-A and SP-D) and 2 small hydrophobic proteins (SP-B and SP-C)
PDB structures from and Proteopedia :1B08 (3D)
 1M7L (3D)
 1PW9 (3D)
 1PWB (3D)
 2GGU (3D)
 2GGX (3D)
 2ORJ (3D)
 2ORK (3D)
 2OS9 (3D)
 2RIA (3D)
 2RIB (3D)
 2RIC (3D)
 2RID (3D)
 2RIE (3D)
 3DBZ (3D)
 3G81 (3D)
 3G83 (3D)
 3G84 (3D)
 
Secondary accessions: Q5T0M3 Q6FH08 Q86YK9 Q8TCD8 Q9UCJ2 Q9UCJ3Post-translational modifications:
The N-terminus is blocked1
Hydroxylation on proline residues within the sequence motif, GXPG, is most likely to be 4-hydroxy as this fits the requirement for 4-hydroxylation in vertebrates (By similarity)1
REFSEQ proteins: NP_003010.4
ENSEMBL proteins: ENSP00000378068 ENSP00000361366
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SFTPD: Assays for SFTPD: | Protein
Domains/ Families for SFTPD(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P35247
ProtoNet protein and cluster: P35247 2 Blocks protein families: IPB008160 Collagen triple helix repeat IPB008161 Collagen helix repeat
UniProtKB/Swiss-Prot: SFTPD_HUMAN, P35247Similarity: Belongs to the SFTPD familySimilarity: Contains 1 C-type lectin domainSimilarity: Contains 1 collagen-like domain | Gene Function for SFTPD
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003019
Applied Biosystems Silencer® siRNAs for SFTPD
Sigma-Aldrich siRNA for SFTPD  Sigma-Aldrich shRNA Panels and shRNA for SFTPD  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003019                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003019                                  untagged cDNA clone in CMV expression vector: NM_003019 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003019
UniProtKB/Swiss-Prot: SFTPD_HUMAN, P35247Function: Contributes to the lung's defense against inhaled microorganisms. May participate in the extracellular reorganization or turnover of pulmonary surfactant. Binds strongly maltose residues and to a lesser extent other alpha-glucosyl moietiesGenatlas biochemistry entry for SFTPD:surfactant-associated glycoprotein D member of the collectin family,pulmonary,playing an important role in innate immunity by binding to specific carbohydrate structures found at the surface of pathogenic microorganisms6 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Sftpd):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for SFTPD
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for SFTPD 
5/19 Interacting proteins for SFTPD (ENSP000003613663) via UniProtKB, MINT, and/or STRING (see all 19
)About this table
5/12 Gene Ontology (GO) biological process terms (links to tree view) (see all 12
): About this table
|
Drugs & Compounds for SFTPD(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SFTPD 10/25 Novoseek chemical compound relationships for SFTPD gene (see all 25
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| mannan |
71.77 |
9 |
10224141 (1), 11045608 (1), 12816736 (1), 9153228 (1) (see all 8) |
| maltose |
66.88 |
23 |
17915943 (3), 9153228 (2), 8918587 (1), 9700129 (1) (see all 16) |
| mannose |
66.65 |
30 |
17915943 (2), 17567900 (2), 15187139 (2), 19249874 (2) (see all 18) |
| allergens |
42.32 |
36 |
9367408 (5), 17202930 (4), 12706535 (4), 15905537 (3) (see all 11) |
| hydroxylysine |
40.76 |
1 |
1339284 (1) |
| phospholipid |
39.70 |
10 |
10666121 (3), 9870921 (1), 10456901 (1), 9813383 (1) (see all 6) |
| phosphatidylinositol |
35.72 |
31 |
1400434 (6), 1457414 (5), 17417879 (3), 16834340 (2) (see all 9) |
| ethylenediaminetetraacetic acid |
28.37 |
8 |
8424457 (2), 8918587 (1), 17177680 (1), 11306442 (1) |
| lipid |
22.25 |
23 |
10666121 (3), 1457414 (2), 16387789 (2), 11667972 (1) (see all 11) |
| n-acetylglucosamine |
19.47 |
2 |
15115749 (2) |
About this table
|
Transcripts for SFTPD(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003019
Sigma-Aldrich siRNA for SFTPD  Sigma-Aldrich shRNA Panels and shRNA for SFTPD  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003019 REFSEQ mRNAs for SFTPD gene: NM_003019.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003019               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003019                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003019                                  untagged cDNA clone in CMV expression vector: NM_003019  Additional cDNA sequence: BC022318.1 CR541948.1 1 DOTS entry: DT.91644675 24/43 AceView cDNA sequences (see all 43
):BX282004 BM972342 AI924488 AI732255 BM985387 BI819407 BF446634 BI820618 BI820265 NM_003019 BG482911 BI822450 BI770406 BM985241 BE465060 BC022318 CR541948 BI821373 BQ029770 X65018 BI489632 BM994163 BQ030140 AI820677
highest scoring ESTs for SFTPD:BC022318 X65018 AA016042 AA487101 AA617783 AI002217 AI732255 AI807697 AI820677 AI924488 Unigene Cluster for SFTPD: Surfactant protein D Hs.253495 [show with all ESTs]Unigene Representative Sequence: BC022318
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000394567
ENST00000372292
|
Expression for SFTPD
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SFTPD expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SFTPD
1 / 2 / 3 3 probe-sets matching SFTPD gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTGCCAATAT
SOURCE GeneReport for Unigene cluster: Hs.253495
Expression variation in blood from EXPOLDB for SFTPD |
Orthologs for SFTPD
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SFTPD gene from 4 species
About this table Species with no ortholog for SFTPD
ENSEMBL Gene Tree for SFTPD | Paralogs for SFTPD(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SFTPD gene
- SFTPA12 SFTPA1B2 SFTPA2B2 MBL22 SFTPA22 ENSG000002201912
|
SNPs/Variants for SFTPD(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SFTPD (up to first 250kb)
|
Disorders & Mutations for SFTPD
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 178635
10/69 Novoseek disease relationships for SFTPD gene (see all 69
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| pulmonary alveolar proteinosis |
80.46 |
21 |
8424457 (2), 19046553 (2), 8046250 (2), 11355171 (1) (see all 12) |
| lung diseases interstitial |
75.09 |
24 |
11818324 (2), 12421999 (2), 19286849 (2), 14522914 (1) (see all 14) |
| bronchoalveolar lavage fluid |
73.65 |
38 |
19046553 (2), 8918587 (1), 10497393 (1), 15274124 (1) (see all 26) |
| pneumonia interstitial |
68.64 |
32 |
12692985 (3), 10846395 (2), 11475580 (2), 17874049 (2) (see all 15) |
| respiratory distress syndrome |
67.93 |
10 |
14522914 (1), 16188791 (1), 19348329 (1), 16472150 (1) (see all 9) |
| lung diseases |
67.83 |
57 |
10897675 (4), 16684127 (4), 16517507 (3), 16472150 (2) (see all 29) |
| fibrosis idiopathic pulmonary |
65.57 |
12 |
11896896 (1), 11321887 (1), 16798048 (1), 17966103 (1) (see all 8) |
| pneumonitis hypersensitivity |
64.55 |
5 |
11083713 (1), 9844346 (1), 16319337 (1), 17874049 (1) |
| acute eosinophilic pneumonia |
63.40 |
2 |
15357266 (1), 16157978 (1) |
| acute respiratory distress |
56.90 |
7 |
14522914 (1), 16472150 (1), 15244040 (1), 10452960 (1) (see all 6) |
About this table
Human Gene Mutation Database: SFTPD Genetic Association Database: SFTPD Human Genome Epidemiology Navigator: SFTPD (20 documents)
|
Medical News for SFTPD(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SFTPD (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/411 PubMed articles for SFTPD gene (see all 411
):- Purification, characterization and cDNA cloning of human lung surfactant protein D. (PubMed id 1339284)1, 2, 3, 4 Lu J....Reid K.B. (1992)
- Human surfactant protein D: SP-D contains a C-type lectin carbohydrate recognition domain. (PubMed id 1898081)1, 2, 3, 4 Rust K.... Crouch E. (1991)
- Polymorphisms in the human surfactant protein-D (SFTPD) gene: strong evidence that serum levels of surfactant protein-D (SP-D) are genetically influenced. (PubMed id 15700120)1, 3, 6 Heidinger K....Bein G. (2005)
- A common polymorphism in the SFTPD gene influences assembly, function, and concentration of surfactant protein D. (PubMed id 15661913)1, 3, 6 Leth-Larsen R....Holmskov U. (2005)
- Accumulation of surfactant protein D in human pulmonary alveolar proteinosis. (PubMed id 8424457)1, 3, 4 Crouch E.... Chang D. (1993)
- Genomic organization of human surfactant protein D (SP-D). SP-D is encoded on chromosome 10q22.2-23.1. (PubMed id 8428971)1, 3, 4 Crouch E.... Grosso L. (1993)
- Surfactant protein A and B genetic variants predispose to idiopathic pulmonary fibrosis. (PubMed id 13680361)1, 3, 6 Selman M.... Floros J. (2003)
- Data mining and multiparameter analysis of lung surfactant protein genes in bronchopulmonary dysplasia. (PubMed id 15102713)3, 6 Rova M....Hallman M. (2004)
- The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)3, 4 Deloukas P.... Rogers J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
|
Search for SFTPD
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SFTPD
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SFTPD
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SFTPD(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| SeattleSNPs | http://pga.gs.washington.edu/data/sftpd/ | | Functional Glycomics Gateway - Glycan Binding | http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_228 |
|
| | | About This Section
| --
| Services for SFTPD(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
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