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Aliases for SFTA1P Gene

Aliases for SFTA1P Gene

  • Surfactant Associated 1, Pseudogene 2 3
  • Surfactant Associated Protein F 2 3
  • Surfactant Associated 1 (Pseudogene) 3
  • SFTPF 3

External Ids for SFTA1P Gene

Previous Symbols for SFTA1P Gene

  • SFTPF

Summaries for SFTA1P Gene

GeneCards Summary for SFTA1P Gene

SFTA1P (Surfactant Associated 1, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SFTA1P Gene

Genomics for SFTA1P Gene

Genomic Location for SFTA1P Gene

Start:
10,784,437 bp from pter
End:
10,794,980 bp from pter
Size:
10,544 bases
Orientation:
Minus strand

Genomic View for SFTA1P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SFTA1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SFTA1P Gene

Regulatory Elements for SFTA1P Gene

Proteins for SFTA1P Gene

Post-translational modifications for SFTA1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SFTA1P Gene

Domains for SFTA1P Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SFTA1P Gene

Function for SFTA1P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SFTA1P Gene

Localization for SFTA1P Gene

No data available for Gene Ontology (GO) - Cellular Components for SFTA1P Gene

Pathways for SFTA1P Gene

SuperPathways for SFTA1P Gene

No Data Available

Interacting Proteins for SFTA1P Gene

Gene Ontology (GO) - Biological Process for SFTA1P Gene

None

No data available for Pathways by source for SFTA1P Gene

Transcripts for SFTA1P Gene

mRNA/cDNA for SFTA1P Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SFTA1P Gene

Surfactant associated 1, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SFTA1P Gene

No ASD Table

Relevant External Links for SFTA1P Gene

GeneLoc Exon Structure for
SFTA1P
ECgene alternative splicing isoforms for
SFTA1P

Expression for SFTA1P Gene

mRNA expression in normal human tissues for SFTA1P Gene

mRNA differential expression in normal tissues according to GTEx for SFTA1P Gene

This gene is overexpressed in Lung (29.7).

SOURCE GeneReport for Unigene cluster for SFTA1P Gene Hs.31562

genes like me logo Genes that share expressions with SFTA1P: view

Orthologs for SFTA1P Gene

Evolution for SFTA1P Gene

ENSEMBL:
Gene Tree for SFTA1P (if available)
TreeFam:
Gene Tree for SFTA1P (if available)

No data available for Orthologs for SFTA1P Gene

Paralogs for SFTA1P Gene

No data available for Paralogs for SFTA1P Gene

Variants for SFTA1P Gene

Sequence variations from dbSNP and Humsavar for SFTA1P Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs4692 -- 10,786,678(-) ATCCC(C/T)CTCTC nc-transcript-variant
rs9714 -- 10,784,537(+) ttctc(C/T)gcagt nc-transcript-variant
rs2146596 -- 10,785,719(+) agagc(A/G)tggga intron-variant
rs2296017 -- 10,792,476(+) GTATT(C/G)GGCTT nc-transcript-variant
rs2296018 -- 10,794,351(+) AATAA(C/G)AAGAG intron-variant

Relevant External Links for SFTA1P Gene

HapMap Linkage Disequilibrium report
SFTA1P

No data available for Structural Variations from Database of Genomic Variants (DGV) for SFTA1P Gene

Disorders for SFTA1P Gene

Relevant External Links for SFTA1P

Genetic Association Database (GAD)
SFTA1P
genes like me logo Genes that share disorders with SFTA1P: view

No data available for UniProtKB/Swiss-Prot for SFTA1P Gene

Publications for SFTA1P Gene

  1. GWAS of dental caries patterns in the permanent dentition. (PMID: 23064961) Shaffer J.R. … Marazita M.L. (J. Dent. Res. 2013) 3
  2. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W. … Jiao S. (Sci Rep 2014) 3
  3. Genome-wide association of familial late-onset Alzheimer's disease replicates BIN1 and CLU and nominates CUGBP2 in interaction with APOE. (PMID: 21379329) Wijsman E.M. … Mayeux R. (PLoS Genet. 2011) 49

Products for SFTA1P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SFTA1P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SFTA1P
    • Block miRNA regulation of SFTA1P using miScript Target Protectors

    Sources for SFTA1P Gene

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