Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SFTA1P Gene

Aliases for SFTA1P Gene

  • Surfactant Associated 1, Pseudogene 2 3 5
  • Surfactant Associated Protein F 2 3
  • SFTPF 3

External Ids for SFTA1P Gene

Previous HGNC Symbols for SFTA1P Gene

  • SFTPF

Previous GeneCards Identifiers for SFTA1P Gene

  • GC10U901088
  • GC10M010827
  • GC10M010745

Summaries for SFTA1P Gene

GeneCards Summary for SFTA1P Gene

SFTA1P (Surfactant Associated 1, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SFTA1P Gene

Genomics for SFTA1P Gene

Regulatory Elements for SFTA1P Gene

Enhancers for SFTA1P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F010791 1.3 FANTOM5 Ensembl ENCODE 14.1 -0.9 -858 8.3 CTCF KLF1 ZNF146 JUN INSM2 KLF17 KAT2B POLR2A ZNF366 PRDM10 SFTA1P ENSG00000228997 CELF2
GH10F010828 1.3 FANTOM5 Ensembl ENCODE 13.8 -35.5 -35467 2.9 ESRRA JUN MAX FEZF1 ZNF101 ZNF121 FOS PRDM10 ZBTB20 TCF7L2 SFTA1P ENSG00000228997 PIR61379 CELF2
GH10F010804 1.1 Ensembl ENCODE 13.9 -10.5 -10476 1.9 KLF1 INSM2 KLF17 FEZF1 ZIC2 ZNF2 ZBTB40 ZNF324 SCRT2 KLF7 SFTA1P CELF2 PIR61379
GH10F010823 1.1 FANTOM5 Ensembl ENCODE 13.9 -30.5 -30504 3.1 POLR2A SMARCA4 JUN BHLHE40 FOS NR2F2 SFTA1P ENSG00000228997 CELF2 PIR61379
GH10F010891 0.8 Ensembl ENCODE 6.6 -96.8 -96756 1.3 BHLHE40 FOS TCF7L2 TRIM28 SFTA1P PIR31286 GC10P010868
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SFTA1P on UCSC Golden Path with GeneCards custom track

Genomic Location for SFTA1P Gene

Chromosome:
10
Start:
10,784,437 bp from pter
End:
10,794,980 bp from pter
Size:
10,544 bases
Orientation:
Minus strand

Genomic View for SFTA1P Gene

Genes around SFTA1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SFTA1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SFTA1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SFTA1P Gene

Proteins for SFTA1P Gene

Post-translational modifications for SFTA1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SFTA1P Gene

Domains & Families for SFTA1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SFTA1P Gene

Function for SFTA1P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SFTA1P Gene

Localization for SFTA1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SFTA1P Gene

Pathways & Interactions for SFTA1P Gene

SuperPathways for SFTA1P Gene

No Data Available

Interacting Proteins for SFTA1P Gene

Gene Ontology (GO) - Biological Process for SFTA1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SFTA1P Gene

Transcripts for SFTA1P Gene

mRNA/cDNA for SFTA1P Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SFTA1P Gene

Surfactant associated 1, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SFTA1P Gene

No ASD Table

Relevant External Links for SFTA1P Gene

GeneLoc Exon Structure for
SFTA1P
ECgene alternative splicing isoforms for
SFTA1P

Expression for SFTA1P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SFTA1P Gene

mRNA differential expression in normal tissues according to GTEx for SFTA1P Gene

This gene is overexpressed in Lung (x29.7).

NURSA nuclear receptor signaling pathways regulating expression of SFTA1P Gene:

SFTA1P

SOURCE GeneReport for Unigene cluster for SFTA1P Gene:

Hs.31562
genes like me logo Genes that share expression patterns with SFTA1P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SFTA1P Gene

Orthologs for SFTA1P Gene

Evolution for SFTA1P Gene

ENSEMBL:
Gene Tree for SFTA1P (if available)
TreeFam:
Gene Tree for SFTA1P (if available)

No data available for Orthologs for SFTA1P Gene

Paralogs for SFTA1P Gene

No data available for Paralogs for SFTA1P Gene

Variants for SFTA1P Gene

Sequence variations from dbSNP and Humsavar for SFTA1P Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10551602 -- 10,795,240(+) TCAAC(-/T)TTTTT intron-variant, upstream-variant-2KB
rs10572655 -- 10,786,493(+) ATTTG(-/A)AAAAA intron-variant
rs10905824 -- 10,789,449(+) ACTAC(A/G)AATAT intron-variant
rs10905825 -- 10,790,978(+) TCCTC(A/G)CCTAT intron-variant
rs10905828 -- 10,795,618(+) AGATC(C/T)ATTAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SFTA1P Gene

Variant ID Type Subtype PubMed ID
nsv1047445 CNV gain 25217958
nsv549964 CNV loss 21841781

Relevant External Links for SFTA1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SFTA1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SFTA1P Gene

Disorders for SFTA1P Gene

Relevant External Links for SFTA1P

Genetic Association Database (GAD)
SFTA1P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SFTA1P

No disorders were found for SFTA1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SFTA1P Gene

Publications for SFTA1P Gene

  1. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W. … Jiao S. (Sci Rep 2014) 3 64
  2. GWAS of dental caries patterns in the permanent dentition. (PMID: 23064961) Shaffer J.R. … Marazita M.L. (J. Dent. Res. 2013) 3 64
  3. Genome-wide association of familial late-onset Alzheimer's disease replicates BIN1 and CLU and nominates CUGBP2 in interaction with APOE. (PMID: 21379329) Wijsman E.M. … Mayeux R. (PLoS Genet. 2011) 46 64

Products for SFTA1P Gene

Sources for SFTA1P Gene

Content
Loading form....