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Aliases for SFT2D1 Gene

Aliases for SFT2D1 Gene

  • SFT2 Domain Containing 1 2 3 5
  • SFT2 Domain-Containing Protein 1 3 4
  • C6orf83 3 4
  • PRGR1 3 4
  • Chromosome 6 Open Reading Frame 83 2

External Ids for SFT2D1 Gene

Previous HGNC Symbols for SFT2D1 Gene

  • C6orf83

Previous GeneCards Identifiers for SFT2D1 Gene

  • GC06M166704
  • GC06M166654
  • GC06M164204
  • GC06M166736

Summaries for SFT2D1 Gene

GeneCards Summary for SFT2D1 Gene

SFT2D1 (SFT2 Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is SFT2D2.

UniProtKB/Swiss-Prot for SFT2D1 Gene

  • May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SFT2D1 Gene

Genomics for SFT2D1 Gene

Regulatory Elements for SFT2D1 Gene

Enhancers for SFT2D1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SFT2D1 on UCSC Golden Path with GeneCards custom track

Promoters for SFT2D1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SFT2D1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SFT2D1 Gene

166,319,728 bp from pter
166,342,606 bp from pter
22,879 bases
Minus strand

Genomic View for SFT2D1 Gene

Genes around SFT2D1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SFT2D1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SFT2D1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SFT2D1 Gene

Proteins for SFT2D1 Gene

  • Protein details for SFT2D1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Vesicle transport protein SFT2A
    Protein Accession:
    Secondary Accessions:
    • Q5TI64
    • Q9UIC7

    Protein attributes for SFT2D1 Gene

    159 amino acids
    Molecular mass:
    17804 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAF18564.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for SFT2D1 Gene

Proteomics data for SFT2D1 Gene at MOPED

Post-translational modifications for SFT2D1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SFT2D1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SFT2D1 Gene

Domains & Families for SFT2D1 Gene

Protein Domains for SFT2D1 Gene

Suggested Antigen Peptide Sequences for SFT2D1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SFT2 family.
  • Belongs to the SFT2 family.
genes like me logo Genes that share domains with SFT2D1: view

No data available for Gene Families for SFT2D1 Gene

Function for SFT2D1 Gene

Molecular function for SFT2D1 Gene

UniProtKB/Swiss-Prot Function:
May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.
genes like me logo Genes that share phenotypes with SFT2D1: view

Animal Model Products

miRNA for SFT2D1 Gene

miRTarBase miRNAs that target SFT2D1

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SFT2D1 Gene

Localization for SFT2D1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SFT2D1 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for SFT2D1 Gene COMPARTMENTS Subcellular localization image for SFT2D1 gene
Compartment Confidence
plasma membrane 3
cytosol 2
nucleus 2

No data available for Gene Ontology (GO) - Cellular Components for SFT2D1 Gene

Pathways & Interactions for SFT2D1 Gene

SuperPathways for SFT2D1 Gene

No Data Available

Interacting Proteins for SFT2D1 Gene

Gene Ontology (GO) - Biological Process for SFT2D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015031 protein transport IEA --
genes like me logo Genes that share ontologies with SFT2D1: view

No data available for Pathways by source and SIGNOR curated interactions for SFT2D1 Gene

Drugs & Compounds for SFT2D1 Gene

No Compound Related Data Available

Transcripts for SFT2D1 Gene

Unigene Clusters for SFT2D1 Gene

SFT2 domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SFT2D1 Gene

No ASD Table

Relevant External Links for SFT2D1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SFT2D1 Gene

mRNA expression in normal human tissues for SFT2D1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SFT2D1 Gene

SOURCE GeneReport for Unigene cluster for SFT2D1 Gene Hs.487143

genes like me logo Genes that share expression patterns with SFT2D1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SFT2D1 Gene

Orthologs for SFT2D1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SFT2D1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SFT2D1 35
  • 87.84 (n)
  • 93.71 (a)
-- 36
  • 79 (a)
SFT2D1 36
  • 94 (a)
(Canis familiaris)
Mammalia SFT2D1 35
  • 90.99 (n)
  • 94.34 (a)
SFT2D1 36
  • 94 (a)
(Mus musculus)
Mammalia Sft2d1 35
  • 86.29 (n)
  • 91.77 (a)
Sft2d1 16
Gm12166 36
  • 91 (a)
Sft2d1 36
  • 91 (a)
(Pan troglodytes)
Mammalia SFT2D1 35
  • 98.95 (n)
  • 98.74 (a)
SFT2D1 36
  • 99 (a)
(Rattus norvegicus)
Mammalia Sft2d1 35
  • 86.37 (n)
  • 91.82 (a)
(Monodelphis domestica)
Mammalia SFT2D1 36
  • 84 (a)
(Ornithorhynchus anatinus)
Mammalia SFT2D1 36
  • 70 (a)
(Gallus gallus)
Aves SFT2D1 35
  • 76.1 (n)
  • 81.13 (a)
SFT2D1 36
  • 81 (a)
(Anolis carolinensis)
Reptilia SFT2D1 36
  • 73 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia sft2d1 35
  • 73.38 (n)
  • 76.73 (a)
Str.11136 35
(Danio rerio)
Actinopterygii sft2d1 35
  • 67.71 (n)
  • 75.47 (a)
sft2d1 36
  • 74 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG5104 35
  • 59.33 (n)
  • 57.86 (a)
CG5104 36
  • 56 (a)
(Caenorhabditis elegans)
Secernentea F27D4.7 36
  • 31 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G24170 35
  • 47.96 (n)
  • 39.35 (a)
(Oryza sativa)
Liliopsida Os01g0219100 35
  • 49.89 (n)
  • 40.65 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 46 (a)
Species with no ortholog for SFT2D1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SFT2D1 Gene

Gene Tree for SFT2D1 (if available)
Gene Tree for SFT2D1 (if available)

Paralogs for SFT2D1 Gene

Paralogs for SFT2D1 Gene

(1) SIMAP similar genes for SFT2D1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SFT2D1: view

Variants for SFT2D1 Gene

Sequence variations from dbSNP and Humsavar for SFT2D1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs11551053 - 166,326,158(-) GTTTC(A/G)TATTT intron-variant, nc-transcript-variant, reference, missense
rs1046214 -- 166,320,348(+) TAACA(G/T)AACTC intron-variant
rs5881692 -- 166,327,099(+) TGGGA(-/GA)AGACT intron-variant
rs1599841 -- 166,321,257(+) AGCTT(C/T)TACCT intron-variant
rs1610311 -- 166,323,644(+) GAGGA(C/G)AGTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SFT2D1 Gene

Variant ID Type Subtype PubMed ID
nsv886934 CNV Loss 21882294

Variation tolerance for SFT2D1 Gene

Residual Variation Intolerance Score: 70.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.72; 15.33% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SFT2D1 Gene

Disorders for SFT2D1 Gene

Relevant External Links for SFT2D1

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SFT2D1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SFT2D1 Gene

Publications for SFT2D1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Identification of host proteins required for HIV infection through a functional genomic screen. (PMID: 18187620) Brass A.L. … Elledge S.J. (Science 2008) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SFT2D1 Gene

Sources for SFT2D1 Gene