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Aliases for SFMBT2 Gene

Aliases for SFMBT2 Gene

  • Scm-Like With Four Mbt Domains 2 2 3
  • KIAA1617 4 6
  • Scm-Related Gene Containing Four Mbt Domains 2 2
  • Scm-Like With 4 MBT Domains Protein 2 4

External Ids for SFMBT2 Gene

Previous GeneCards Identifiers for SFMBT2 Gene

  • GC10M007354
  • GC10M007208

Summaries for SFMBT2 Gene

GeneCards Summary for SFMBT2 Gene

SFMBT2 (Scm-Like With Four Mbt Domains 2) is a Protein Coding gene. GO annotations related to this gene include histone binding. An important paralog of this gene is SCMH1.

UniProtKB/Swiss-Prot for SFMBT2 Gene

  • Transcriptional repressor of HOXB13 gene.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SFMBT2 Gene

Genomics for SFMBT2 Gene

Regulatory Elements for SFMBT2 Gene

Genomic Location for SFMBT2 Gene

Start:
7,158,624 bp from pter
End:
7,411,486 bp from pter
Size:
252,863 bases
Orientation:
Minus strand

Genomic View for SFMBT2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SFMBT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SFMBT2 Gene

Proteins for SFMBT2 Gene

  • Protein details for SFMBT2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VUG0-SMBT2_HUMAN
    Recommended name:
    Scm-like with four MBT domains protein 2
    Protein Accession:
    Q5VUG0
    Secondary Accessions:
    • A7MD09
    • Q9HCF5

    Protein attributes for SFMBT2 Gene

    Size:
    894 amino acids
    Molecular mass:
    100563 Da
    Quaternary structure:
    • Interacts with YY1. Interacts with methylated histones H3K9me2 and H4K20me2, but not with H3K4me2, nor H3K9Ac.
    SequenceCaution:
    • Sequence=BAB13443.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for SFMBT2 Gene

neXtProt entry for SFMBT2 Gene

Proteomics data for SFMBT2 Gene at MOPED

Post-translational modifications for SFMBT2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SFMBT2 Gene

No data available for DME Specific Peptides for SFMBT2 Gene

Domains for SFMBT2 Gene

Gene Families for SFMBT2 Gene

HGNC:
  • SAMD :Sterile alpha motif (SAM) domain containing

Protein Domains for SFMBT2 Gene

Suggested Antigen Peptide Sequences for SFMBT2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5VUG0

UniProtKB/Swiss-Prot:

SMBT2_HUMAN :
  • Q5VUG0
Domain:
  • Contains 1 SAM (sterile alpha motif) domain.
Similarity:
  • Contains 4 MBT repeats.
genes like me logo Genes that share domains with SFMBT2: view

Function for SFMBT2 Gene

Molecular function for SFMBT2 Gene

UniProtKB/Swiss-Prot Function: Transcriptional repressor of HOXB13 gene.

Gene Ontology (GO) - Molecular Function for SFMBT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005488 binding --
GO:0005515 protein binding IPI 23385818
GO:0042393 histone binding IDA 23385818
GO:0043565 sequence-specific DNA binding --
genes like me logo Genes that share ontologies with SFMBT2: view

Phenotypes for SFMBT2 Gene

GenomeRNAi human phenotypes for SFMBT2:
genes like me logo Genes that share phenotypes with SFMBT2: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SFMBT2 Gene

Localization for SFMBT2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SFMBT2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SFMBT2 Gene COMPARTMENTS Subcellular localization image for SFMBT2 gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for SFMBT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 23385818
GO:0005654 nucleoplasm IDA --
GO:0016235 aggresome IDA --
GO:0043231 intracellular membrane-bounded organelle IDA --
genes like me logo Genes that share ontologies with SFMBT2: view

Pathways for SFMBT2 Gene

SuperPathways for SFMBT2 Gene

No Data Available

Interacting Proteins for SFMBT2 Gene

Gene Ontology (GO) - Biological Process for SFMBT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0010629 negative regulation of gene expression IDA 23385818
genes like me logo Genes that share ontologies with SFMBT2: view

No data available for Pathways by source for SFMBT2 Gene

Transcripts for SFMBT2 Gene

Unigene Clusters for SFMBT2 Gene

Scm-like with four mbt domains 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SFMBT2 Gene

No ASD Table

Relevant External Links for SFMBT2 Gene

GeneLoc Exon Structure for
SFMBT2
ECgene alternative splicing isoforms for
SFMBT2

Expression for SFMBT2 Gene

mRNA expression in normal human tissues for SFMBT2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for SFMBT2 Gene

SOURCE GeneReport for Unigene cluster for SFMBT2 Gene Hs.407983

genes like me logo Genes that share expressions with SFMBT2: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SFMBT2 Gene

Orthologs for SFMBT2 Gene

This gene was present in the common ancestor of animals.

Orthologs for SFMBT2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SFMBT2 35
  • 98.25 (n)
  • 98.17 (a)
SFMBT2 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SFMBT2 35
  • 85.75 (n)
  • 91.25 (a)
SFMBT2 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SFMBT2 35
  • 88.14 (n)
  • 92.06 (a)
SFMBT2 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sfmbt2 35
  • 79.46 (n)
  • 77.83 (a)
Sfmbt2 16
Sfmbt2 36
  • 69 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SFMBT2 36
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SFMBT2 36
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sfmbt2 35
  • 81.74 (n)
  • 80.75 (a)
chicken
(Gallus gallus)
Aves SFMBT2 35
  • 78.23 (n)
  • 84.24 (a)
SFMBT2 36
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SFMBT2 36
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sfmbt2 35
  • 71.61 (n)
  • 75.34 (a)
zebrafish
(Danio rerio)
Actinopterygii sfmbt2 35
  • 62.45 (n)
  • 63.67 (a)
sfmbt2 36
  • 62 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea lin-61 36
  • 17 (a)
ManyToMany
mbtr-1 36
  • 19 (a)
ManyToMany
Species with no ortholog for SFMBT2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SFMBT2 Gene

ENSEMBL:
Gene Tree for SFMBT2 (if available)
TreeFam:
Gene Tree for SFMBT2 (if available)

Paralogs for SFMBT2 Gene

Paralogs for SFMBT2 Gene

Selected SIMAP similar genes for SFMBT2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with SFMBT2: view

Variants for SFMBT2 Gene

Sequence variations from dbSNP and Humsavar for SFMBT2 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs479425 -- 7,363,441(+) cctcc(C/T)gggtt intron-variant
rs484300 -- 7,357,874(-) CCAAC(A/G)GTCGT intron-variant
rs490818 -- 7,357,191(-) TGAAT(C/T)GCCCA intron-variant
rs517472 -- 7,356,541(-) CTACT(C/T)GGGAG intron-variant
rs545686 -- 7,355,875(+) ttctg(C/T)actaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SFMBT2 Gene

Variant ID Type Subtype PubMed ID
nsv7198 OTHER Inversion 18451855
nsv831777 CNV Gain 17160897
esv2732217 CNV Deletion 23290073
esv1259186 CNV Deletion 17803354
nsv831778 CNV Loss 17160897
nsv517524 CNV Loss 19592680
nsv894849 CNV Gain 21882294
nsv831779 CNV Loss 17160897
nsv825241 CNV Loss 20364138
nsv5731 CNV Insertion 18451855
nsv518530 CNV Loss 19592680
esv2732228 CNV Deletion 23290073
esv2732239 CNV Deletion 23290073
esv2732251 CNV Deletion 23290073
esv2234111 CNV Deletion 18987734
esv2669338 CNV Deletion 23128226
esv1635316 CNV Insertion 17803354
dgv221e1 CNV Complex 17122850

Relevant External Links for SFMBT2 Gene

HapMap Linkage Disequilibrium report
SFMBT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SFMBT2 Gene

Disorders for SFMBT2 Gene

Relevant External Links for SFMBT2

Genetic Association Database (GAD)
SFMBT2
genes like me logo Genes that share disorders with SFMBT2: view

No data available for UniProtKB/Swiss-Prot for SFMBT2 Gene

Publications for SFMBT2 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10997877) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4
  2. Regulation of DU145 prostate cancer cell growth by Scm-like with four mbt domains 2. (PMID: 23385818) Lee K. … Ju B.G. (J. Biosci. 2013) 3 4
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance. (PMID: 22581228) Manning A.K. … Langenberg C. (Nat. Genet. 2012) 3

Products for SFMBT2 Gene

Sources for SFMBT2 Gene

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