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Aliases for SETP20 Gene

Aliases for SETP20 Gene

  • SET Pseudogene 20 2 3 5

External Ids for SETP20 Gene

Previous GeneCards Identifiers for SETP20 Gene

  • GC04M110476

Summaries for SETP20 Gene

GeneCards Summary for SETP20 Gene

SETP20 (SET Pseudogene 20) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SETP20 Gene

Genomics for SETP20 Gene

Regulatory Elements for SETP20 Gene

Enhancers for SETP20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F108618 0.5 ENCODE 18 +933.1 933076 4.2 PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 RPL34 SEC24B SETP20 OSTC CDC42P4 RPL34-AS1 PIR53159
GH04F109559 0.2 ENCODE 13.1 -6.4 -6423 2.7 HDGF PKNOX1 ATF1 SIN3A FEZF1 ZNF2 GLIS2 CBX5 ZNF263 TBX21 SEC24B SEC24B-AS1 SETP20 CDC42P4 MCUB PIR49237
GH04F110479 1.2 Ensembl ENCODE 12.7 -926.3 -926291 1.6 CTCF ATF1 MAFG FEZF1 JUND ZNF316 ZNF292 MAFK SETP20 CDC42P4 GC04M110483 ENSG00000199894 GC04M110434
GH04F110106 1.1 FANTOM5 Ensembl ENCODE 10.9 -553.3 -553327 2.8 SAP130 ZNF140 BACH1 CEBPG RAD21 YY1 ZKSCAN1 ZNF316 FOS NFE2 SEC24B-AS1 ELOVL6 SETP20 LRIT3 RN7SL275P GC04M110046
GH04F110411 0.9 Ensembl ENCODE 10.8 -857.8 -857824 1.0 PKNOX1 INSM2 KLF17 FEZF1 ZNF2 GLIS2 ZNF366 ZNF263 OVOL3 TSHZ1 KRT19P3 SEC24B-AS1 SETP20 ZNF969P RPL7L1P13
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SETP20 on UCSC Golden Path with GeneCards custom track

Genomic Location for SETP20 Gene

Chromosome:
4
Start:
109,553,243 bp from pter
End:
109,554,094 bp from pter
Size:
852 bases
Orientation:
Minus strand

Genomic View for SETP20 Gene

Genes around SETP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETP20 Gene

Proteins for SETP20 Gene

Post-translational modifications for SETP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SETP20 Gene

Domains & Families for SETP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SETP20 Gene

Function for SETP20 Gene

Phenotypes for SETP20 Gene

GenomeRNAi human phenotypes for SETP20:
genes like me logo Genes that share phenotypes with SETP20: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETP20 Gene

Localization for SETP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SETP20 Gene

Pathways & Interactions for SETP20 Gene

SuperPathways for SETP20 Gene

No Data Available

Interacting Proteins for SETP20 Gene

Gene Ontology (GO) - Biological Process for SETP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SETP20 Gene

Transcripts for SETP20 Gene

mRNA/cDNA for SETP20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SETP20 Gene

No ASD Table

Relevant External Links for SETP20 Gene

GeneLoc Exon Structure for
SETP20
ECgene alternative splicing isoforms for
SETP20

Expression for SETP20 Gene

mRNA expression in normal human tissues for SETP20 Gene

mRNA differential expression in normal tissues according to GTEx for SETP20 Gene

This gene is overexpressed in Pituitary (x4.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for SETP20 Gene



NURSA nuclear receptor signaling pathways regulating expression of SETP20 Gene:

SETP20
genes like me logo Genes that share expression patterns with SETP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SETP20 Gene

Orthologs for SETP20 Gene

Evolution for SETP20 Gene

ENSEMBL:
Gene Tree for SETP20 (if available)
TreeFam:
Gene Tree for SETP20 (if available)

No data available for Orthologs for SETP20 Gene

Paralogs for SETP20 Gene

No data available for Paralogs for SETP20 Gene

Variants for SETP20 Gene

Relevant External Links for SETP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SETP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETP20 Gene

Disorders for SETP20 Gene

No disorders were found for SETP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SETP20 Gene

Publications for SETP20 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for SETP20 Gene

Sources for SETP20 Gene

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