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Aliases for SETP20 Gene

Aliases for SETP20 Gene

  • SET Pseudogene 20 2 3 5

External Ids for SETP20 Gene

Previous GeneCards Identifiers for SETP20 Gene

  • GC04M110476

Summaries for SETP20 Gene

GeneCards Summary for SETP20 Gene

SETP20 (SET Pseudogene 20) is a Pseudogene.

Additional gene information for SETP20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SETP20 Gene

Genomics for SETP20 Gene

Regulatory Elements for SETP20 Gene

Enhancers for SETP20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H108618 1.4 ENCODE dbSUPER 18.1 +933.1 933076 4 HNRNPUL1 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 RPL34 SEC24B SETP20 RPL34-AS1 PIR53159
GH04H109727 1.3 ENCODE dbSUPER 10.3 -175.7 -175660 4 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 GTF3C2 ZNF766 GLIS2 ZNF143 PLA2G12A GAR1 SEC24B SEC24B-AS1 CDC42P4 CFI SETP20 CASP6
GH04H110411 1.2 Ensembl ENCODE 10.9 -857.8 -857824 1 PKNOX1 ARNT ZSCAN4 INSM2 KLF17 FEZF1 ZNF2 GLIS2 ZNF366 ZSCAN5C KRT19P3 SEC24B-AS1 SETP20 ZNF969P RPL7L1P13
GH04H109422 1.1 Ensembl ENCODE 11.8 +131.4 131403 0 HDGF CTCF PKNOX1 ATF1 ZNF2 RAD21 TEAD3 CC2D1A SMC3 ZNF143 SEC24B CDC42P4 SETP20 CASP6 GAR1 OSTC PLA2G12A LRIT3 PIR37678
GH04H110479 0.9 Ensembl ENCODE 12.7 -926.3 -926291 1 CTCF ATF1 ZBTB21 MAFG MAX FEZF1 ZNF292 JUND PRDM6 ZNF316 SETP20 CDC42P4 GC04M110483 GC04M110434 ENSG00000199894
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SETP20 on UCSC Golden Path with GeneCards custom track

Genomic Location for SETP20 Gene

Chromosome:
4
Start:
109,553,243 bp from pter
End:
109,554,094 bp from pter
Size:
852 bases
Orientation:
Minus strand

Genomic View for SETP20 Gene

Genes around SETP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETP20 Gene

Proteins for SETP20 Gene

Post-translational modifications for SETP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SETP20 Gene

Domains & Families for SETP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SETP20 Gene

Function for SETP20 Gene

Phenotypes for SETP20 Gene

GenomeRNAi human phenotypes for SETP20:
genes like me logo Genes that share phenotypes with SETP20: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SETP20
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETP20 Gene

Localization for SETP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SETP20 Gene

Pathways & Interactions for SETP20 Gene

SuperPathways for SETP20 Gene

No Data Available

Interacting Proteins for SETP20 Gene

Gene Ontology (GO) - Biological Process for SETP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SETP20 Gene

Drugs & Compounds for SETP20 Gene

No Compound Related Data Available

Transcripts for SETP20 Gene

mRNA/cDNA for SETP20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SETP20
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SETP20 Gene

No ASD Table

Relevant External Links for SETP20 Gene

GeneLoc Exon Structure for
SETP20
ECgene alternative splicing isoforms for
SETP20

Expression for SETP20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SETP20 Gene

mRNA differential expression in normal tissues according to GTEx for SETP20 Gene

This gene is overexpressed in Pituitary (x4.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for SETP20 Gene



NURSA nuclear receptor signaling pathways regulating expression of SETP20 Gene:

SETP20
genes like me logo Genes that share expression patterns with SETP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SETP20 Gene

Orthologs for SETP20 Gene

Evolution for SETP20 Gene

ENSEMBL:
Gene Tree for SETP20 (if available)
TreeFam:
Gene Tree for SETP20 (if available)

No data available for Orthologs for SETP20 Gene

Paralogs for SETP20 Gene

No data available for Paralogs for SETP20 Gene

Variants for SETP20 Gene

Relevant External Links for SETP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SETP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETP20 Gene

Disorders for SETP20 Gene

No disorders were found for SETP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SETP20 Gene

Publications for SETP20 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 60

Products for SETP20 Gene

Sources for SETP20 Gene

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