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Aliases for SETP20 Gene

Aliases for SETP20 Gene

  • SET Pseudogene 20 2 3 5

External Ids for SETP20 Gene

Previous GeneCards Identifiers for SETP20 Gene

  • GC04M110476

Summaries for SETP20 Gene

GeneCards Summary for SETP20 Gene

SETP20 (SET Pseudogene 20) is a Pseudogene.

Additional gene information for SETP20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SETP20 Gene

Genomics for SETP20 Gene

GeneHancer (GH) Regulatory Elements for SETP20 Gene

Promoters and enhancers for SETP20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I108618 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 34.8 +933.1 933076 4.2 HNRNPUL1 PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 RPL34 RPL34-AS1 PIR53159 SETP20 SEC24B CDC42P4 OSTC GC04P108610
GH04I110192 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.8 -642.3 -642270 7 MLX FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC ZNF610 GLIS1 RCOR2 ELOVL6 SEC24B GAR1 SETP20 CDC42P4 CASP6 ENSG00000250511 ENSG00000248200
GH04I109814 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 18.8 -262.0 -262030 3.1 FOXA2 CLOCK SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 POLR2B GAR1 ENSG00000272795 SETP20 SEC24B CDC42P4 CASP6 LRIT3 GC04M109825
GH04I109559 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.4 -6.4 -6423 2.7 HDGF PKNOX1 ATF1 SMAD1 SIN3A FEZF1 ZNF2 IRF4 GLIS2 ZNF207 GC04M109557 MCUB SEC24B-AS1 SEC24B SETP20 CDC42P4 PIR49237
GH04I108649 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11 +903.2 903173 2.6 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 GC04P108653 OSTC RNU6-431P SETP20 SEC24B CDC42P4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SETP20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SETP20 Gene

Genomic Locations for SETP20 Gene
chr4:109,553,243-109,554,094
(GRCh38/hg38)
Size:
852 bases
Orientation:
Minus strand
chr4:110,474,399-110,476,929
(GRCh37/hg19)

Genomic View for SETP20 Gene

Genes around SETP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETP20 Gene

Proteins for SETP20 Gene

Post-translational modifications for SETP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SETP20 Gene

Domains & Families for SETP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SETP20 Gene

Function for SETP20 Gene

Phenotypes From GWAS Catalog for SETP20 Gene

Phenotypes for SETP20 Gene

GenomeRNAi human phenotypes for SETP20:
genes like me logo Genes that share phenotypes with SETP20: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETP20 Gene

Localization for SETP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SETP20 Gene

Pathways & Interactions for SETP20 Gene

SuperPathways for SETP20 Gene

No Data Available

Interacting Proteins for SETP20 Gene

Gene Ontology (GO) - Biological Process for SETP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SETP20 Gene

Drugs & Compounds for SETP20 Gene

No Compound Related Data Available

Transcripts for SETP20 Gene

mRNA/cDNA for SETP20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SETP20 Gene

No ASD Table

Relevant External Links for SETP20 Gene

GeneLoc Exon Structure for
SETP20
ECgene alternative splicing isoforms for
SETP20

Expression for SETP20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SETP20 Gene

mRNA differential expression in normal tissues according to GTEx for SETP20 Gene

This gene is overexpressed in Pituitary (x4.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for SETP20 Gene



NURSA nuclear receptor signaling pathways regulating expression of SETP20 Gene:

SETP20
genes like me logo Genes that share expression patterns with SETP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SETP20 Gene

Orthologs for SETP20 Gene

Evolution for SETP20 Gene

ENSEMBL:
Gene Tree for SETP20 (if available)
TreeFam:
Gene Tree for SETP20 (if available)

No data available for Orthologs for SETP20 Gene

Paralogs for SETP20 Gene

No data available for Paralogs for SETP20 Gene

Variants for SETP20 Gene

Additional Variant Information for SETP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SETP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETP20 Gene

Disorders for SETP20 Gene

No disorders were found for SETP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SETP20 Gene

Publications for SETP20 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for SETP20 Gene

Sources for SETP20 Gene

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