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Aliases for SETP17 Gene

Subcategory (RNA class) for SETP17 Gene

lncRNA

Aliases for SETP17 Gene

  • SET Pseudogene 17 2 3 5

External Ids for SETP17 Gene

ORGUL Members for SETP17 Gene

Previous GeneCards Identifiers for SETP17 Gene

  • GC11P086005

Summaries for SETP17 Gene

GeneCards Summary for SETP17 Gene

SETP17 (SET Pseudogene 17) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SETP17 Gene

Genomics for SETP17 Gene

Regulatory Elements for SETP17 Gene

Enhancers for SETP17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F086676 0.6 ENCODE 4.4 +381.7 381662 0.8 CTCF TEAD4 REST RAD21 RFX5 TEAD3 ZNF341 NFE2 TRIM28 ME3 SETP17 PIR50196
GH11F086291 0.8 Ensembl ENCODE 0.8 -2.9 -2859 0.6 WRNIP1 ARID4B THRB RAD21 RARA ZNF362 HMG20B ZNF654 CEBPB REST EED SETP17 LOC100289518
GH11F086292 0.2 ENCODE 0.8 -1.7 -1687 0.2 PKNOX1 JUND IKZF1 EED JUNB ETV6 CREM SETP17 LOC100289518
GH11F086293 0.2 ENCODE 0.8 -1.3 -1307 0.2 NFYB IKZF1 EED JUNB SPI1 EED SETP17 LOC100289518
GH11F086287 0.4 ENCODE 0.4 -6.5 -6533 0.5 MIR6755 EED ENSG00000255005 LOC100289518 SETP17
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SETP17 on UCSC Golden Path with GeneCards custom track

Genomic Location for SETP17 Gene

Chromosome:
11
Start:
86,294,760 bp from pter
End:
86,295,578 bp from pter
Size:
819 bases
Orientation:
Plus strand

Genomic View for SETP17 Gene

Genes around SETP17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETP17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETP17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETP17 Gene

Proteins for SETP17 Gene

Post-translational modifications for SETP17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SETP17 Gene

Domains & Families for SETP17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SETP17 Gene

Function for SETP17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETP17 Gene

Localization for SETP17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SETP17 Gene

Pathways & Interactions for SETP17 Gene

SuperPathways for SETP17 Gene

No Data Available

Interacting Proteins for SETP17 Gene

Gene Ontology (GO) - Biological Process for SETP17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SETP17 Gene

Transcripts for SETP17 Gene

mRNA/cDNA for SETP17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SETP17 Gene

No ASD Table

Relevant External Links for SETP17 Gene

GeneLoc Exon Structure for
SETP17
ECgene alternative splicing isoforms for
SETP17

Expression for SETP17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SETP17 Gene

NURSA nuclear receptor signaling pathways regulating expression of SETP17 Gene:

SETP17
genes like me logo Genes that share expression patterns with SETP17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SETP17 Gene

Orthologs for SETP17 Gene

Evolution for SETP17 Gene

ENSEMBL:
Gene Tree for SETP17 (if available)
TreeFam:
Gene Tree for SETP17 (if available)

No data available for Orthologs for SETP17 Gene

Paralogs for SETP17 Gene

No data available for Paralogs for SETP17 Gene

Variants for SETP17 Gene

Relevant External Links for SETP17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SETP17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETP17 Gene

Disorders for SETP17 Gene

Relevant External Links for SETP17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SETP17

No disorders were found for SETP17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SETP17 Gene

Publications for SETP17 Gene

No publications were found for SETP17 Gene.

Products for SETP17 Gene

Sources for SETP17 Gene

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