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Aliases for SETD8P1 Gene

Aliases for SETD8P1 Gene

  • SET Domain Containing 8 Pseudogene 1 2 3 5
  • PR/SET Domain Containing Protein 07 Pseudogene 3
  • SET07p 3
  • SET7 3

External Ids for SETD8P1 Gene

Previous GeneCards Identifiers for SETD8P1 Gene

  • GC13P9C0127
  • GC00P9C0126
  • GC00M000273

Summaries for SETD8P1 Gene

GeneCards Summary for SETD8P1 Gene

SETD8P1 (SET Domain Containing 8 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SETD8P1 Gene

Genomics for SETD8P1 Gene

Regulatory Elements for SETD8P1 Gene

Promoters for SETD8P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SETD8P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SETD8P1 Gene

Chromosome:
13
Start:
18,297,554 bp from pter
End:
18,300,377 bp from pter
Size:
2,824 bases
Orientation:
Plus strand

Genomic View for SETD8P1 Gene

Genes around SETD8P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETD8P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETD8P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETD8P1 Gene

Proteins for SETD8P1 Gene

Post-translational modifications for SETD8P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SETD8P1 Gene

Domains & Families for SETD8P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SETD8P1 Gene

Function for SETD8P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETD8P1 Gene

Localization for SETD8P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SETD8P1 Gene

Pathways & Interactions for SETD8P1 Gene

SuperPathways for SETD8P1 Gene

No Data Available

Interacting Proteins for SETD8P1 Gene

Gene Ontology (GO) - Biological Process for SETD8P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SETD8P1 Gene

Drugs & Compounds for SETD8P1 Gene

No Compound Related Data Available

Transcripts for SETD8P1 Gene

mRNA/cDNA for SETD8P1 Gene

(13) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SETD8P1 Gene

No ASD Table

Relevant External Links for SETD8P1 Gene

GeneLoc Exon Structure for
SETD8P1
ECgene alternative splicing isoforms for
SETD8P1

Expression for SETD8P1 Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SETD8P1 Gene

Orthologs for SETD8P1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SETD8P1 Gene

Organism Taxonomy Gene Similarity Type Details
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9122 35
Species with no ortholog for SETD8P1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SETD8P1 Gene

ENSEMBL:
Gene Tree for SETD8P1 (if available)
TreeFam:
Gene Tree for SETD8P1 (if available)

Paralogs for SETD8P1 Gene

No data available for Paralogs for SETD8P1 Gene

Variants for SETD8P1 Gene

Relevant External Links for SETD8P1 Gene

HapMap Linkage Disequilibrium report
SETD8P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETD8P1 Gene

Disorders for SETD8P1 Gene

No disorders were found for SETD8P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SETD8P1 Gene

Publications for SETD8P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 67
  2. PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin. (PMID: 12086618) Nishioka K. … Reinberg D. (Mol. Cell 2002) 3
  3. Mitotic-specific methylation of histone H4 Lys 20 follows increased PR-Set7 expression and its localization to mitotic chromosomes. (PMID: 12208845) Rice J.C. … Allis C.D. (Genes Dev. 2002) 3
  4. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3

Products for SETD8P1 Gene

Sources for SETD8P1 Gene

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