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Aliases for SETD5 Gene

Aliases for SETD5 Gene

  • SET Domain Containing 5 2 3
  • KIAA1757 4

External Ids for SETD5 Gene

Previous GeneCards Identifiers for SETD5 Gene

  • GC03P009414
  • GC03P009439
  • GC03P009376

Summaries for SETD5 Gene

Entrez Gene Summary for SETD5 Gene

  • This function of this gene has yet to be determined but mutations in this gene have been associated with autosomal dominant mental retardation-23. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, May 2014]

GeneCards Summary for SETD5 Gene

SETD5 (SET Domain Containing 5) is a Protein Coding gene. Diseases associated with SETD5 include mental retardation, autosomal dominant 23 and intellectual disability-facial dysmorphism syndrome due to setd5 haploinsufficiency. An important paralog of this gene is KMT2E.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SETD5 Gene

Genomics for SETD5 Gene

Regulatory Elements for SETD5 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SETD5 Gene

Start:
9,397,615 bp from pter
End:
9,479,240 bp from pter
Size:
81,626 bases
Orientation:
Plus strand

Genomic View for SETD5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SETD5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETD5 Gene

Proteins for SETD5 Gene

  • Protein details for SETD5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9C0A6-SETD5_HUMAN
    Recommended name:
    SET domain-containing protein 5
    Protein Accession:
    Q9C0A6
    Secondary Accessions:
    • Q6AI17
    • Q8WUB6
    • Q9H3X4
    • Q9H6V7
    • Q9H7S3
    • Q9NVI9

    Protein attributes for SETD5 Gene

    Size:
    1442 amino acids
    Molecular mass:
    157515 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH20956.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAA91762.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB14903.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB15144.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB21848.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for SETD5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SETD5 Gene

Proteomics data for SETD5 Gene at MOPED

Post-translational modifications for SETD5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SETD5 Gene

Domains for SETD5 Gene

Protein Domains for SETD5 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for SETD5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9C0A6

UniProtKB/Swiss-Prot:

SETD5_HUMAN :
  • Q9C0A6
Domain:
  • Contains 1 SET domain.
genes like me logo Genes that share domains with SETD5: view

No data available for Gene Families for SETD5 Gene

Function for SETD5 Gene

Gene Ontology (GO) - Molecular Function for SETD5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with SETD5: view

Phenotypes for SETD5 Gene

MGI mutant phenotypes for SETD5:
inferred from 1 alleles
GenomeRNAi human phenotypes for SETD5:
genes like me logo Genes that share phenotypes with SETD5: view

Animal Model Products

CRISPR Products

miRNA for SETD5 Gene

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SETD5

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for SETD5 Gene

Localization for SETD5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SETD5 Gene COMPARTMENTS Subcellular localization image for SETD5 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SETD5 Gene

Pathways for SETD5 Gene

SuperPathways for SETD5 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for SETD5 Gene

None

No data available for Pathways by source for SETD5 Gene

Transcripts for SETD5 Gene

Unigene Clusters for SETD5 Gene

SET domain containing 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SETD5

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SETD5

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SETD5 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b · 14c ^ 15 ^ 16a · 16b ^
SP1: - -
SP2: - - -
SP3: - - - -
SP4: - - - -
SP5:
SP6: - - - - -
SP7: - - - -
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:

ExUns: 17 ^ 18 ^ 19a · 19b · 19c · 19d ^ 20 ^ 21 ^ 22 ^ 23 ^ 24a · 24b · 24c ^ 25a · 25b ^ 26a · 26b ^ 27
SP1: - - - -
SP2: - - - -
SP3:
SP4:
SP5: -
SP6:
SP7:
SP8:
SP9: -
SP10: -
SP11: - -
SP12:
SP13: -

Relevant External Links for SETD5 Gene

GeneLoc Exon Structure for
SETD5
ECgene alternative splicing isoforms for
SETD5

Expression for SETD5 Gene

mRNA expression in normal human tissues for SETD5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SETD5 Gene

SOURCE GeneReport for Unigene cluster for SETD5 Gene Hs.288164

genes like me logo Genes that share expressions with SETD5: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SETD5 Gene

Orthologs for SETD5 Gene

This gene was present in the common ancestor of animals.

Orthologs for SETD5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SETD5 35
  • 98.75 (n)
  • 98.39 (a)
SETD5 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SETD5 35
  • 94.42 (n)
  • 95.21 (a)
SETD5 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SETD5 35
  • 94.29 (n)
  • 95.41 (a)
SETD5 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Setd5 35
  • 91.97 (n)
  • 93.82 (a)
Setd5 16
Setd5 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SETD5 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SETD5 36
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Setd5 35
  • 92.13 (n)
  • 94.2 (a)
chicken
(Gallus gallus)
Aves SETD5 35
  • 73.16 (n)
  • 74.59 (a)
SETD5 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SETD5 36
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia setd5 35
  • 65.29 (n)
  • 62.41 (a)
Str.11463 35
zebrafish
(Danio rerio)
Actinopterygii setd5 35
  • 58.9 (n)
  • 56.44 (a)
setd5 36
  • 43 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG9007 36
  • 4 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea set-24 36
  • 19 (a)
ManyToMany
set-26 36
  • 7 (a)
ManyToMany
set-9 36
  • 7 (a)
ManyToMany
Y73B3A.1 36
  • 12 (a)
ManyToMany
Species with no ortholog for SETD5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SETD5 Gene

ENSEMBL:
Gene Tree for SETD5 (if available)
TreeFam:
Gene Tree for SETD5 (if available)

Paralogs for SETD5 Gene

Paralogs for SETD5 Gene

Selected SIMAP similar genes for SETD5 Gene using alignment to 9 proteins:

genes like me logo Genes that share paralogs with SETD5: view

Variants for SETD5 Gene

Sequence variations from dbSNP and Humsavar for SETD5 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs904467 -- 9,427,971(-) AAAAG(C/T)GGTGA intron-variant
rs1060894 -- 9,466,473(+) AATAC(A/C)GTCCA intron-variant
rs1152314 -- 9,450,656(-) TTACA(A/G)TTTTG intron-variant
rs1162752 -- 9,425,377(+) GTTTC(G/T)TAAGG intron-variant
rs1183160 -- 9,426,219(+) TTTTT(G/T)TTTTt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SETD5 Gene

Variant ID Type Subtype PubMed ID
dgv277n21 CNV Loss 19592680
nsv821981 CNV Loss 20364138
nsv237037 CNV Loss 16902084
nsv527954 CNV Loss 19592680
esv2675276 CNV Deletion 23128226
nsv3692 CNV Insertion 18451855

Relevant External Links for SETD5 Gene

HapMap Linkage Disequilibrium report
SETD5
Human Gene Mutation Database (HGMD)
SETD5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SETD5 Gene

Disorders for SETD5 Gene

UniProtKB/Swiss-Prot

SETD5_HUMAN
  • Mental retardation, autosomal dominant 23 (MRD23) [MIM:615761]: A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. MRD23 patients manifest moderate to severe intellectual disability with additional variable features of brachycephaly, a low hairline, depressed nasal bridge, prominent high nasal root, tubular nose, upslanting palpebral fissures, long and smooth philtrum, micrognathia, thin upper lip, and crowded teeth. Behavioral problems, including obsessive-compulsive disorder, hand flapping with ritualized behavior, and autism, are prominent features. {ECO:0000269 PubMed:24680889}. Note=The disease is caused by mutations affecting the gene represented in this entry.
genes like me logo Genes that share disorders with SETD5: view

Publications for SETD5 Gene

  1. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11214970) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 3 4
  5. De novo loss-of-function mutations in SETD5, encoding a methyltransferase in a 3p25 microdeletion syndrome critical region, cause intellectual disability. (PMID: 24680889) Grozeva D. … Raymond F.L. (Am. J. Hum. Genet. 2014) 3 4

Products for SETD5 Gene

Sources for SETD5 Gene

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