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Aliases for SERTM2 Gene

Aliases for SERTM2 Gene

  • Serine Rich And Transmembrane Domain Containing 2 2 3
  • Long Intergenic Non-Protein Coding RNA 890 2 3 5
  • LINC00890 3 5
  • DKFZp686D0853 3

External Ids for SERTM2 Gene

Previous HGNC Symbols for SERTM2 Gene

  • LINC00890

Summaries for SERTM2 Gene

GeneCards Summary for SERTM2 Gene

SERTM2 (Serine Rich And Transmembrane Domain Containing 2) is a Protein Coding gene.

Additional gene information for SERTM2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SERTM2 Gene

Genomics for SERTM2 Gene

Regulatory Elements for SERTM2 Gene

Enhancers for SERTM2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH111511 0.6 Ensembl ENCODE 0.7 +0.2 247 0 SPI1 SERTM2 GC0XP111615
GH0XH111518 0.4 ENCODE 0.4 +7.9 7885 1 RFX1 SERTM2 GC0XP111615
GH0XH111549 0.5 ENCODE 0.3 +37.8 37849 0 SCRT1 ATF7 ATF2 SERTM2 GC0XP111615
GH0XH111542 0.2 ENCODE 0.3 +31.9 31851 1 SERTM2 GC0XP111615
GH0XH111555 0.2 ENCODE 0.3 +44.3 44320 0 SERTM2 GC0XP111615
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SERTM2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SERTM2 Gene

Chromosome:
X
Start:
111,511,662 bp from pter
End:
111,522,399 bp from pter
Size:
10,738 bases
Orientation:
Plus strand

Genomic View for SERTM2 Gene

Genes around SERTM2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SERTM2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SERTM2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SERTM2 Gene

Proteins for SERTM2 Gene

  • Protein details for SERTM2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GWG4
    Recommended name:
    Long intergenic non-protein coding RNA 890
    Protein Accession:
    A0A1B0GWG4

    Protein attributes for SERTM2 Gene

    Size:
    89 amino acids
    Molecular mass:
    10088 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SERTM2 Gene

Post-translational modifications for SERTM2 Gene

No Post-translational modifications

Other Protein References for SERTM2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SERTM2 Gene

Domains & Families for SERTM2 Gene

Protein Domains for SERTM2 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SERTM2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SERTM2 Gene

Function for SERTM2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SERTM2 Gene

Localization for SERTM2 Gene

Gene Ontology (GO) - Cellular Components for SERTM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SERTM2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SERTM2 Gene

Pathways & Interactions for SERTM2 Gene

SuperPathways for SERTM2 Gene

No Data Available

Interacting Proteins for SERTM2 Gene

Gene Ontology (GO) - Biological Process for SERTM2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SERTM2 Gene

Drugs & Compounds for SERTM2 Gene

No Compound Related Data Available

Transcripts for SERTM2 Gene

mRNA/cDNA for SERTM2 Gene

(1) REFSEQ mRNAs :
(13) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SERTM2 Gene

No ASD Table

Relevant External Links for SERTM2 Gene

GeneLoc Exon Structure for
SERTM2
ECgene alternative splicing isoforms for
SERTM2

Expression for SERTM2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SERTM2 Gene:

SERTM2
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SERTM2 Gene

Orthologs for SERTM2 Gene

Evolution for SERTM2 Gene

ENSEMBL:
Gene Tree for SERTM2 (if available)
TreeFam:
Gene Tree for SERTM2 (if available)

No data available for Orthologs for SERTM2 Gene

Paralogs for SERTM2 Gene

No data available for Paralogs for SERTM2 Gene

Variants for SERTM2 Gene

Sequence variations from dbSNP and Humsavar for SERTM2 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000402227 -- 111,514,284(+) CCATG(A/C)ATTTA intron-variant
rs1001052404 -- 111,517,163(+) ATTGG(C/G)GGGAA intron-variant
rs1001208759 -- 111,518,090(+) ATCTG(C/T)TGGAG nc-transcript-variant
rs1001267617 -- 111,517,655(+) ATGAA(C/T)TTTGA intron-variant
rs1002337737 -- 111,511,759(+) GGCAC(A/C)CACAC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SERTM2 Gene

Variant ID Type Subtype PubMed ID
esv3361732 OTHER inversion 20981092
esv3577046 CNV gain 25503493

Relevant External Links for SERTM2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SERTM2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SERTM2 Gene

Disorders for SERTM2 Gene

Relevant External Links for SERTM2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SERTM2

No disorders were found for SERTM2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SERTM2 Gene

Publications for SERTM2 Gene

  1. Expression Profiling of lncRNAs, miRNAs, and mRNAs and Their Differential Expression in Leiomyoma Using Next-Generation RNA Sequencing. (PMID: 28587571) Chuang TD … Khorram O (Reproductive sciences (Thousand Oaks, Calif.) 2017) 2 3 60

Products for SERTM2 Gene

Sources for SERTM2 Gene

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