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Aliases for SERTAD4-AS1 Gene

Subcategory (RNA class) for SERTAD4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SERTAD4-AS1 Gene

  • SERTAD4 Antisense RNA 1 2 3 4 5
  • SERTAD4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C1orf133 3 4
  • Chromosome 1 Open Reading Frame 133 2
  • SERTAD4 Antisense Gene Protein 1 4

External Ids for SERTAD4-AS1 Gene

Previous HGNC Symbols for SERTAD4-AS1 Gene

  • C1orf133

Previous GeneCards Identifiers for SERTAD4-AS1 Gene

  • GC01M210405

Summaries for SERTAD4-AS1 Gene

GeneCards Summary for SERTAD4-AS1 Gene

SERTAD4-AS1 (SERTAD4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SERTAD4-AS1 Gene

Genomics for SERTAD4-AS1 Gene

Regulatory Elements for SERTAD4-AS1 Gene

Enhancers for SERTAD4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F210331 1.4 FANTOM5 Ensembl ENCODE 15.7 -98.6 -98555 1.7 PKNOX1 TBL1XR1 SCRT2 ETV6 CREM SP3 CBFB JUNB ZEB2 TSHZ1 SERTAD4-AS1 HHAT SERTAD4 PIR50724
GH01F210259 1.1 VISTA Ensembl ENCODE 19.7 -27.6 -27624 4.3 ZFHX2 ZNF146 SMARCA4 POLR2A HLF ZNF600 EGR2 SERTAD4-AS1 SERTAD4 TRAF3IP3 IRF6 ST13P19 GC01P210243
GH01F210371 1.4 Ensembl ENCODE 14.9 -139.5 -139542 3.4 PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 RCOR3 SERTAD4-AS1 SERTAD4 ST13P19 HHAT GC01M210375 RNU5A-8P PIR50724
GH01F210342 1.1 Ensembl ENCODE 16.9 -109.5 -109468 1.2 HDGF PKNOX1 YBX1 BMI1 ZNF2 ZNF366 EGR2 REST ZEB2 TBX21 SERTAD4-AS1 RNU5A-8P SERTAD4 HHAT PIR50724
GH01F210250 1.5 FANTOM5 Ensembl ENCODE 11.2 -17.7 -17699 3.0 ZNF76 ZNF2 GLIS2 EGR2 ZNF263 SP3 ZEB2 ZNF843 SMARCA4 ZNF341 SERTAD4-AS1 TRAF3IP3 GC01P210243 ST13P19
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SERTAD4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SERTAD4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000552246 1020 2200 PKNOX1 SIN3A ZNF2 GLIS2 ZNF143 FOS DEK ZNF263 SP3 REST

Genomic Location for SERTAD4-AS1 Gene

Chromosome:
1
Start:
210,231,456 bp from pter
End:
210,234,121 bp from pter
Size:
2,666 bases
Orientation:
Minus strand

Genomic View for SERTAD4-AS1 Gene

Genes around SERTAD4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SERTAD4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SERTAD4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SERTAD4-AS1 Gene

Proteins for SERTAD4-AS1 Gene

  • Protein details for SERTAD4-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TG53-SEAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein SERTAD4-AS1
    Protein Accession:
    Q5TG53

    Protein attributes for SERTAD4-AS1 Gene

    Size:
    156 amino acids
    Molecular mass:
    16212 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI22281.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for SERTAD4-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SERTAD4-AS1 Gene

Post-translational modifications for SERTAD4-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SERTAD4-AS1 Gene

Domains & Families for SERTAD4-AS1 Gene

Protein Domains for SERTAD4-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SERTAD4-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SERTAD4-AS1 Gene

Function for SERTAD4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SERTAD4-AS1 Gene

Localization for SERTAD4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SERTAD4-AS1 Gene

Pathways & Interactions for SERTAD4-AS1 Gene

SuperPathways for SERTAD4-AS1 Gene

No Data Available

Interacting Proteins for SERTAD4-AS1 Gene

Gene Ontology (GO) - Biological Process for SERTAD4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SERTAD4-AS1 Gene

Transcripts for SERTAD4-AS1 Gene

mRNA/cDNA for SERTAD4-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SERTAD4-AS1 Gene

SERTAD4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SERTAD4-AS1 Gene

No ASD Table

Relevant External Links for SERTAD4-AS1 Gene

GeneLoc Exon Structure for
SERTAD4-AS1
ECgene alternative splicing isoforms for
SERTAD4-AS1

Expression for SERTAD4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SERTAD4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SERTAD4-AS1 Gene

This gene is overexpressed in Colon - Sigmoid (x5.1).

Protein differential expression in normal tissues from HIPED for SERTAD4-AS1 Gene

This gene is overexpressed in Retina (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SERTAD4-AS1 Gene



Protein tissue co-expression partners for SERTAD4-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for SERTAD4-AS1 Gene:

Hs.446946
genes like me logo Genes that share expression patterns with SERTAD4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SERTAD4-AS1 Gene

Orthologs for SERTAD4-AS1 Gene

Evolution for SERTAD4-AS1 Gene

ENSEMBL:
Gene Tree for SERTAD4-AS1 (if available)
TreeFam:
Gene Tree for SERTAD4-AS1 (if available)

No data available for Orthologs for SERTAD4-AS1 Gene

Paralogs for SERTAD4-AS1 Gene

No data available for Paralogs for SERTAD4-AS1 Gene

Variants for SERTAD4-AS1 Gene

Sequence variations from dbSNP and Humsavar for SERTAD4-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10581814 -- 210,232,240(+) AACTG(-/TTTG)GTCCT intron-variant, upstream-variant-2KB
rs10661759 -- 210,235,626(+) ATAGG(-/ATCTC)ATATG intron-variant, upstream-variant-2KB
rs113184207 -- 210,235,233(+) ATAAA(C/T)CTTAT intron-variant, upstream-variant-2KB
rs113299123 -- 210,234,961(+) AGTCT(G/T)CTGGG intron-variant, upstream-variant-2KB
rs11439996 -- 210,233,992(+) TTTTT(-/AA)TTAAA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SERTAD4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1068469 CNV deletion 25765185
nsv1121788 CNV deletion 24896259
nsv8769 CNV gain 18304495

Relevant External Links for SERTAD4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SERTAD4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SERTAD4-AS1 Gene

Disorders for SERTAD4-AS1 Gene

Relevant External Links for SERTAD4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SERTAD4-AS1

No disorders were found for SERTAD4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SERTAD4-AS1 Gene

Publications for SERTAD4-AS1 Gene

  1. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 3 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SERTAD4-AS1 Gene

Sources for SERTAD4-AS1 Gene

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