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Aliases for SERTAD3 Gene

Aliases for SERTAD3 Gene

  • SERTA Domain Containing 3 2 3 5
  • RPA-Binding Trans-Activator 2 3 4
  • Replication Protein-Binding Trans-Activator 3 4
  • RBT1 3 4

External Ids for SERTAD3 Gene

Previous GeneCards Identifiers for SERTAD3 Gene

  • GC19M045639
  • GC19M045640
  • GC19M040946
  • GC19M037383

Summaries for SERTAD3 Gene

Entrez Gene Summary for SERTAD3 Gene

  • The protein encoded by this gene was identified in a yeast two-hybrid assay employing the second subunit of human replication protein A as bait. It is localized to the nucleus and its expression is significantly higher in cancer cell lines compared to normal cell lines. This protein has also been shown to be a strong transcriptional co-activator. Alternative splicing has been observed at this locus and two variants, both encoding the same protein, have been identified. [provided by RefSeq, Jul 2008]

GeneCards Summary for SERTAD3 Gene

SERTAD3 (SERTA Domain Containing 3) is a Protein Coding gene. Diseases associated with SERTAD3 include amyotrophic lateral sclerosis 1.

UniProtKB/Swiss-Prot for SERTAD3 Gene

  • Strong transcriptional coactivator.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SERTAD3 Gene

Genomics for SERTAD3 Gene

Regulatory Elements for SERTAD3 Gene

Promoters for SERTAD3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SERTAD3 on UCSC Golden Path with GeneCards custom track

Genomic Location for SERTAD3 Gene

Chromosome:
19
Start:
40,440,841 bp from pter
End:
40,444,705 bp from pter
Size:
3,865 bases
Orientation:
Minus strand

Genomic View for SERTAD3 Gene

Genes around SERTAD3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SERTAD3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SERTAD3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SERTAD3 Gene

Proteins for SERTAD3 Gene

  • Protein details for SERTAD3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UJW9-SRTD3_HUMAN
    Recommended name:
    SERTA domain-containing protein 3
    Protein Accession:
    Q9UJW9
    Secondary Accessions:
    • B3KQB3
    • Q96CQ2

    Protein attributes for SERTAD3 Gene

    Size:
    196 amino acids
    Molecular mass:
    21769 Da
    Quaternary structure:
    • Interacts with RPA2.

neXtProt entry for SERTAD3 Gene

Proteomics data for SERTAD3 Gene at MOPED

Post-translational modifications for SERTAD3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SERTAD3 Gene

No data available for DME Specific Peptides for SERTAD3 Gene

Domains & Families for SERTAD3 Gene

Protein Domains for SERTAD3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SERTAD3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UJW9

UniProtKB/Swiss-Prot:

SRTD3_HUMAN :
  • Contains 1 SERTA domain.
Domain:
  • Contains 1 SERTA domain.
genes like me logo Genes that share domains with SERTAD3: view

No data available for Gene Families for SERTAD3 Gene

Function for SERTAD3 Gene

Molecular function for SERTAD3 Gene

UniProtKB/Swiss-Prot Function:
Strong transcriptional coactivator.
genes like me logo Genes that share phenotypes with SERTAD3: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SERTAD3 Gene

Localization for SERTAD3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SERTAD3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SERTAD3 Gene COMPARTMENTS Subcellular localization image for SERTAD3 gene
Compartment Confidence
nucleus 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for SERTAD3 Gene

Pathways & Interactions for SERTAD3 Gene

SuperPathways for SERTAD3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SERTAD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030308 negative regulation of cell growth IDA 16098148
genes like me logo Genes that share ontologies with SERTAD3: view

No data available for Pathways by source and SIGNOR curated interactions for SERTAD3 Gene

Drugs & Compounds for SERTAD3 Gene

No Compound Related Data Available

Transcripts for SERTAD3 Gene

Unigene Clusters for SERTAD3 Gene

SERTA domain containing 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SERTAD3 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c
SP1: - -
SP2: - - -
SP3: - - - -
SP4: - - -
SP5:

Relevant External Links for SERTAD3 Gene

GeneLoc Exon Structure for
SERTAD3
ECgene alternative splicing isoforms for
SERTAD3

Expression for SERTAD3 Gene

mRNA expression in normal human tissues for SERTAD3 Gene

SOURCE GeneReport for Unigene cluster for SERTAD3 Gene Hs.515412

genes like me logo Genes that share expression patterns with SERTAD3: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SERTAD3 Gene

Orthologs for SERTAD3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SERTAD3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SERTAD3 35
  • 88.78 (n)
  • 92.86 (a)
SERTAD3 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SERTAD3 35
  • 88.21 (n)
  • 91.28 (a)
SERTAD3 36
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sertad3 35
  • 83.76 (n)
  • 85.64 (a)
Sertad3 16
Sertad3 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SERTAD3 35
  • 99.83 (n)
  • 100 (a)
SERTAD3 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sertad3 35
  • 84.1 (n)
  • 84.1 (a)
Species with no ortholog for SERTAD3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SERTAD3 Gene

ENSEMBL:
Gene Tree for SERTAD3 (if available)
TreeFam:
Gene Tree for SERTAD3 (if available)

Paralogs for SERTAD3 Gene

No data available for Paralogs for SERTAD3 Gene

Variants for SERTAD3 Gene

Sequence variations from dbSNP and Humsavar for SERTAD3 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1058041 -- 40,440,938(-) CATGC(C/T)GGGTT utr-variant-3-prime
rs2368579 -- 40,441,054(+) GAGGA(C/G)ACCAG utr-variant-3-prime
rs8109544 -- 40,440,650(+) aggct(A/G)gcctc downstream-variant-500B
rs7259255 -- 40,441,073(+) ACCCC(C/T)TCAAG utr-variant-3-prime
rs10419182 -- 40,440,775(+) TGGTG(C/G)TGATG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SERTAD3 Gene

Variant ID Type Subtype PubMed ID
nsv833831 CNV Loss 17160897
dgv3867n71 CNV Loss 21882294
nsv911709 CNV Loss 21882294
nsv819017 CNV Loss 19587683

Variation tolerance for SERTAD3 Gene

Residual Variation Intolerance Score: 27.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.36; 7.96% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SERTAD3 Gene

HapMap Linkage Disequilibrium report
SERTAD3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SERTAD3 Gene

Disorders for SERTAD3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SERTAD3 Gene - From: DISEASES

Disorder Aliases PubMed IDs
amyotrophic lateral sclerosis 1
  • amyotrophic lateral sclerosis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SERTAD3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SERTAD3
genes like me logo Genes that share disorders with SERTAD3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SERTAD3 Gene

Publications for SERTAD3 Gene

  1. RBT1, a novel transcriptional co-activator, binds the second subunit of replication protein A. (PMID: 10982866) Cho J.M. … Alaoui-Jamali M.A. (Nucleic Acids Res. 2000) 2 3 4 23 67
  2. TRIP-Br: a novel family of PHD zinc finger- and bromodomain- interacting proteins that regulate the transcriptional activity of E2F-1/DP-1. (PMID: 11331592) Hsu S.-I. … Bonventre J.V. (EMBO J. 2001) 2 3
  3. Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. (PMID: 24722188) Corominas R. … Iakoucheva L.M. (Nat. Commun. 2014) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. An empirical framework for binary interactome mapping. (PMID: 19060904) Venkatesan K. … Vidal M. (Nat. Methods 2009) 3

Products for SERTAD3 Gene

Sources for SERTAD3 Gene

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