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SERPINA5 Gene

protein-coding   GIFtS: 63

GC14P094117
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5
(Previous names: serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbols: PLANH3, PCI)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
PAI-3 3
PAI3 1, 2, 3
PCI 2, 3, 5
PLANH3 2, 3, 5
PROCI 1, 2, 3
Descriptions
Acrosomal serine protease inhibitor 3
Plasminogen activator inhibitor 3 3
Protein C inhibitor 3
Serpin A5 3
plasminogen activator inhibitor III 2
plasminogen activator inhibitor-3 2
serine (or cysteine) proteinase inhibitor, clade A (alpha-1
antiproteinase, antitrypsin), member 5 1, 2
serpin peptidase inhibitor, clade A (alpha-1
antiproteinase, antitrypsin), member 5 2
External Ids
HGNC: 87231
Entrez Gene: 51042
UniProtKB: P051543
Ensembl: ENSG000001884887
Search outside databases for aliases for SERPINA5 gene

Previous GC identifers: GC14P092555 GC14P088864 GC14P093018 GC14P093021 GC14P093037

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154
Function: Inhibits activated protein C as well as plasminogen activators

Gene Wiki entry for SERPINA5 (Protein_C_inhibitor)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the SERPINA5 gene  

Entrez Gene cytogenetic band: 14q32.1   Ensembl cytogenetic band:  14q32.13   HGNC cytogenetic band: 14q32.1

SERPINA5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P094117:     (about GC identifiers)

Start:
94,117,564 bp from pter
End:
94,129,205 bp from pter
Size:
11,642 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000014.7  NT_026437.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154 (See protein sequence)
Recommended Name: Plasma serine protease inhibitor precursor  
Size: 406 amino acids; 45702 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :
1LQ8 (3D)    1PAI (3D)    2HI9 (3D)    2OL2 (3D)    2PAI (3D)    3DY0 (3D)    
Secondary accessions: Q07616 Q9UG30

REFSEQ proteins: NP_000615.3  

ENSEMBL proteins: 
ENSP00000333203 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
R&D Systems Recombinant & Natural Proteins for SERPINA5 (Serpin A5/Protein C Inhibitor)
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (Protein C inhibitor)
Human Recombinant Proteins from Abnova (SERPINA5)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

3 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region TAS11120760
GO:0016020 membrane IDA7521127
GO:0043234 protein complex IDA7521127
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Antibodies for SERPINA5: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for SERPINA5
R&D Systems Antibodies for SERPINA5 (Serpin A5/Protein C Inhibitor)
Antibodies from Abcam (Protein C inhibitor), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (SERPINA5)
Novus Biologicals Antibodies for SERPINA5

Assays for SERPINA5: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro domain/family:
 IPR000215 Protease_inhib_I4_serpin


   GeneDecks  SERPINA5 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P05154

ProtoNet protein and cluster: P05154

1 Blocks protein family: IPB000215 Serpin

UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154
Similarity: Belongs to the serpin family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (SERPINA5)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000624

              Applied Biosystems Silencer® siRNAs for SERPINA5

              Sigma-Aldrich siRNA and siRNA Panels for SERPINA5  
                     Sigma-Aldrich shRNA Panels and shRNA for SERPINA5  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000624
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_000624
                                 untagged cDNA clone in CMV expression vector: NM_000624 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_000624

UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154
Function: Inhibits activated protein C as well as plasminogen activators

2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Serpina5):

endocrine/exocrine glandreproductive system

5 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0002020 protease binding IPI15853774
GO:0004867 serine-type endopeptidase inhibitor activity IDA7521127
GO:0005515 protein binding IEA--
GO:0008201 heparin binding TAS11120760
GO:0032190 acrosin binding IPI7521127
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Invitrogen iPath™ Online BioAtlas - Pathway for SERPINA5 (Maps provided by GeneGo):
 PLAU signaling

   GeneDecks  SERPINA5 for the pathways selected above  
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1 Millipore Pathway for SERPINA5
 Cell adhesion PLAU signaling

   GeneDecks  SERPINA5 for the pathways selected above  
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for  SERPINA5  (Your Favorite Gene powered by Ingenuity) 
 Coagulation System

   GeneDecks  SERPINA5 for the pathways selected above  
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1 Kegg Pathway  (Kegg details for SERPINA5):
 hsa04610 Complement and coagulation cascades

   GeneDecks  SERPINA5 for the pathways selected above  
About GeneDecksing
 Gene Network CentralTM Interacting Genes and Proteins Network for  SERPINA5 


5/23 Interacting proteins for SERPINA5 (ENSP000003332033 P051542) via UniProtKB, MINT, and/or STRING (see all 23 )
InteractantInteraction Details
GeneCardExternal ID(s)
COPS6Q7L5N12MINT-63402
PROCENSP000002340713STRING (score=.996)
PLAUENSP000003618483STRING (score=.99)
KLK3ENSP000003141513STRING (score=.988)
KLKB1ENSP000002646903STRING (score=.967)
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3 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0007283 spermatogenesis ISS--
GO:0007342 fusion of sperm to egg plasma membrane NAS9510955
GO:0045861 negative regulation of proteolysis IEA--
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for SERPINA5
1 Novoseek chemical compound relationship for SERPINA5 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
fibrinogen 37.05 2 8128433 (1), 7571997 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (SERPINA5)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000624

              Sigma-Aldrich siRNA and siRNA Panels for SERPINA5  
                     Sigma-Aldrich shRNA Panels and shRNA for SERPINA5  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_000624  

REFSEQ mRNAs for SERPINA5 gene: 

NM_000624.4   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_000624  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000624
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_000624
                                 untagged cDNA clone in CMV expression vector: NM_000624 

Additional cDNA sequence: 

AK096131.1 AK293192.1 AK298279.1 AK309586.1 AK310869.1 AK313196.1 AL080185.1 BC008915.2 
BC014992.1 BX248009.1 BX248760.1 CR605698.1 CR622620.1 J02639.1 L19684.1 S58545.1 
U35464.1 

24/29 DOTS entries (see all 29 ):

DT.85104682  DT.100831497  DT.95255240  DT.91926531  DT.446447  DT.120779232  DT.92400801  DT.87016075 
DT.91944271  DT.92430151  DT.120779169  DT.101978469  DT.120779330  DT.92430155  DT.120779240  DT.120779247 
DT.95231261  DT.95255243  DT.100668663  DT.100678995  DT.120779130  DT.120779133  DT.120779181  DT.120779188 

24/1378 AceView cDNA sequences (see all 1378 ):

CB163692 BC034554 CR625124 BM821233 BI825717 BM710517 N59384 BQ007994 
T29357 BC013189 AA343716 CB154133 BE728135 BU177847 BU727982 AW205285 
AI146388 BX448791 BE813691 CR602814 CB162531 AI206127 BU734345 AA345271 

highest scoring ESTs for SERPINA5:

AA337036 AA341620 AA576058 AA613884 AA701671 AA876209 AA906782 AA922777 AA922910 AA934730 

Unigene Cluster for SERPINA5:

Serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5
Hs.159628  [show with all ESTs]
Unigene Representative Sequence: NM_000624


GeneLoc Exon Structure

5/10 Alternative Splicing Database (ASD) splice patterns (SP) for SERPINA5 (see all 10 )

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c · 5d · 5e ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11a ·
SP1:                                -     -     -     -     -                       -     -     -                                                               
SP2:                                      -     -     -     -                                                                                                   
SP3:                          -     -     -     -     -     -                 -     -     -     -     -     -     -     -                                       
SP4:                                                                                                                                                            
SP5:                                      -     -     -     -                                                                                                   

ExUns: 11b
SP1:      
SP2:      
SP3:      
SP4:      
SP5:      

About this scheme

ECgene alternative splicing isoforms for SERPINA5

1 Ensembl transcript including schematic representation:
ENST00000329597  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

SERPINA5 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for SERPINA5

1 / 2 / 3

3 probe-sets matching SERPINA5 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
37008_r_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 M68516 0.20 1.00 0.72 1

209443_at2, 3 U133-A 2 1.00 0.95 -- -- J02639 0.80 0.88 0.84 1

209443_at2 U133Plus2 2 1.00 0.95 -- -- -- -- -- -- --
GeneDecks  SERPINA5 for binary patterns associated with the probe-sets selected above  
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About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.159628

Expression variation in blood from EXPOLDB for SERPINA5

UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154
Tissue specificity: Expressed by the liver and secreted in plasma

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for SERPINA5 gene from 5 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
SERPINA51   -- serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, more 81.32(n)
73.09(a)
480424  XM_537545.2  XP_537545.1 
cow
(Bos taurus)
SERPINA51   -- serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, more 79.85(n)
72.14(a)
338050  NM_176646.2  NP_788819.1 
rat
(Rattus norvegicus)
Serpina51   -- serine (or cysteine) peptidase inhibitor, clade A, more 73.93(n)
64.11(a)
65051  NM_022957.2  NP_075246.2 
mouse
(Mus musculus)
Serpina51, 5 125
serine (or cysteine) peptidase inhibitor, clade A, more1, 5 73.51(n)1
63.61(a)1
2685911  NM_172953.21  NP_766541.11 
 AH0067665  AK0771605  (see all 9)
worm
(Caenorhabditis elegans)
srp-13 V(753188-754813) serine protease inhibitor 29(a)   --
About this table        Species with no ortholog for SERPINA5

ENSEMBL Gene Tree for SERPINA5
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for SERPINA5 gene
SERPINA12  SERPINA32  SERPINA22  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/170 NCBI SNPs in SERPINA5 are shown (see all 170 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 146)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 14 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs14759381,2
A,C,F,H,O94116769(+) CCGGTG/ATCTTG 1 -- ng5112Minor allele frequency- A:0.29EU EA WA NA 1056
rs20699961,2
A,C,F,H,O94129617(+) GTGCCG/AAATGA 1 -- ng314Minor allele frequency- A:0.15NS EA 252
rs101445611,2
A,C,F,H94115657(+) ATCCAT/CGACAA 1 -- ng51 tfbs34Minor allele frequency- C:0.32EU EA WA 382
rs61081,2
A,C,F,H94128384(+) GGCTAA/TGCTAT 1 -- ut3115Minor allele frequency- N:0.00NS MN EA NA EU WA 1316
rs9381,2
A,C,F,H94128566(+) GATTAA/GCACTG 1 -- ut31 ese312Minor allele frequency- G:0.18NS EA MN EU WA NA 2382
rs20699951,2
A,C,F,O94129535(+) CAGGGA/GCATCT 1 -- ng312Minor allele frequency- G:0.37NS 86
rs61191,2
A,C,F,H94123765(+) CAGAGA/GAGGAG 1 K/E mis1 ese3 trp318Minor allele frequency- G:0.29MN NS NA EU EA WA 1656
rs118473621,2
A,C,F,H94117150(+) CCCCCC/TCTAAT 1 -- ng514Minor allele frequency- T:0.29EU EA WA 414
rs20699931,2
A,C,F,H94128940(+) AGAAAG/AGCTGG 1 -- ut31 ese39Minor allele frequency- A:0.02NS EU EA WA NA 642
rs20699921,2
A,C,F,H94128760(+) CAACTG/CTCAGT 1 -- ut3113Minor allele frequency- C:0.16NS EU EA WA NA 1048
About this table

HapMap Linkage Disequilibrium images for SERPINA5 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 601841

2 Novoseek disease relationships for SERPINA5 gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
venous thrombosis 22.60 2 8418545 (1), 12139754 (1)
tumors 0.00 4 18983517 (2), 2153429 (1)
About this table

Genetic Association Database: SERPINA5
Human Genome Epidemiology Navigator: SERPINA5 (1 document)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/90 PubMed articles for SERPINA5 gene (see all 90 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 5104 HGNC: 8723 AceView: SERPINA5andSERPINA3 Ensembl:ENSG00000188488 euGenes: HUgn5104
ECgene: SERPINA5 H-InvDB: SERPINA5
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
SeattleSNPshttp://pga.gs.washington.edu/data/serpina5/
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for SERPINA5:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
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 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for SERPINA5 Antibodies for SERPINA5
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 Lentivirus-delivered shRNAs for SERPINA5 Browse small molecules at Sigma-Aldrich
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 Recombinant Proteins
(Protein C inhibitor)
 Antibodies (Protein C inhibitor)
 Search OriGene for SERPINA5
 Search Tocris compounds for SERPINA5




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for SERPINA5

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