SERPINA5 Gene
protein-coding GIFtS : 63
GC14P094117
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 (Previous names: serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: PLANH3, PCI )
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Aliases & Descriptions for SERPINA5
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions Acrosomal serine protease inhibitor 3 Plasminogen activator inhibitor 3 3 Protein C inhibitor 3 Serpin A5 3 plasminogen activator inhibitor III 2 plasminogen activator inhibitor-3 2 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 1 , 2 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 2
Search outside databases for aliases for SERPINA5 genePrevious GC identifers: GC14P092555 GC14P088864 GC14P093018 GC14P093021 GC14P093037
Summaries for SERPINA5 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154 Function : Inhibits activated protein C as well as plasminogen activators
Gene Wiki entry for SERPINA5 (Protein_C_inhibitor)
Genomic Location for SERPINA5
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SERPINA5 gene Entrez Gene cytogenetic band: 14q32.1 Ensembl cytogenetic band: 14q32.13 HGNC cytogenetic band: 14q32.1 SERPINA5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14P094117:
(about GC identifiers )
Start:
94,117,564 bp from pter
End:
94,129,205 bp from pter
Size:
11,642 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000014.7 NT_026437.11 Proteins for SERPINA5
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154 (See
protein sequence )Recommended Name: Plasma serine protease inhibitor precursor Size : 406 amino acids; 45702 Da
Subcellular location : Secreted
PDB structures from and Proteopedia : 1LQ8 (3D)
 1PAI (3D)
 2HI9 (3D)
 2OL2 (3D)
 2PAI (3D)
 3DY0 (3D)
 
Secondary accessions : Q07616 Q9UG30
REFSEQ proteins: NP_000615.3 ENSEMBL proteins: ENSP00000333203 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for SERPINA5: Assays for SERPINA5:
Protein
Domains/ Families for SERPINA5(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P05154 ProtoNet protein and cluster: P05154
1 Blocks protein family : IPB000215 Serpin UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154 Similarity : Belongs to the serpin family
Gene Function for SERPINA5
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000624 Applied Biosystems Silencer ® siRNAs for SERPINA5 Sigma-Aldrich siRNA and siRNA Panels for SERPINA5 Sigma-Aldrich shRNA Panels and shRNA for SERPINA5 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000624                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000624                                  untagged cDNA clone in CMV expression vector: NM_000624  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000624 UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154 Function : Inhibits activated protein C as well as plasminogen activators
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Serpina5) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for SERPINA5
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for SERPINA5 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for SERPINA5 5/23 Interacting proteins for SERPINA5 (ENSP00000333203 3 P05154 2 ) via UniProtKB, MINT, and/or STRING (see all 23
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for SERPINA5 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SERPINA5 1 Novoseek chemical compound relationship for SERPINA5 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
fibrinogen
37.05
2
8128433 (1), 7571997 (1)
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Transcripts for SERPINA5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000624 Sigma-Aldrich siRNA and siRNA Panels for SERPINA5 Sigma-Aldrich shRNA Panels and shRNA for SERPINA5 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000624
REFSEQ mRNAs for SERPINA5 gene: NM_000624.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000624
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000624                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000624                                  untagged cDNA clone in CMV expression vector: NM_000624  
Additional cDNA sequence: AK096131.1 AK293192.1 AK298279.1 AK309586.1 AK310869.1 AK313196.1 AL080185.1 BC008915.2 BC014992.1 BX248009.1 BX248760.1 CR605698.1 CR622620.1 J02639.1 L19684.1 S58545.1 U35464.1
24/29 DOTS entries (see all 29
): DT.85104682 DT.100831497 DT.95255240 DT.91926531 DT.446447 DT.120779232 DT.92400801 DT.87016075 DT.91944271 DT.92430151 DT.120779169 DT.101978469 DT.120779330 DT.92430155 DT.120779240 DT.120779247 DT.95231261 DT.95255243 DT.100668663 DT.100678995 DT.120779130 DT.120779133 DT.120779181 DT.120779188
24/1378 AceView cDNA sequences (see all 1378
):CB163692 BC034554 CR625124 BM821233 BI825717 BM710517 N59384 BQ007994 T29357 BC013189 AA343716 CB154133 BE728135 BU177847 BU727982 AW205285 AI146388 BX448791 BE813691 CR602814 CB162531 AI206127 BU734345 AA345271
highest scoring ESTs for SERPINA5 :AA337036 AA341620 AA576058 AA613884 AA701671 AA876209 AA906782 AA922777 AA922910 AA934730
Unigene Cluster for SERPINA5: Serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 Hs.159628 [show with all ESTs ] Unigene Representative Sequence: NM_000624 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for SERPINA5 (see all 10
) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c · 5d · 5e ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11a · SP1 :           -   -   -   -   -         -   -   -                       SP2 :             -   -   -   -                                   SP3 :         -   -   -   -   -   -       -   -   -   -   -   -   -   -               SP4 :                                                     SP5 :             -   -   -   -                                  
About this scheme ECgene alternative splicing isoforms for SERPINA5 1 Ensembl transcript including schematic representation : ENST00000329597
Expression for SERPINA5
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SERPINA5 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SERPINA5 1 / 2 / 3
3 probe-sets matching SERPINA5 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.159628 Expression variation in blood from EXPOLDB for SERPINA5
UniProtKB/Swiss-Prot: IPSP_HUMAN, P05154 Tissue specificity : Expressed by the liver and secreted in plasma
Orthologs for SERPINA5
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SERPINA5 gene from 5 species
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
SERPINA51
--
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, more
81.32(n) 73.09(a)
480424 XM_537545.2 XP_537545.1
cow (Bos taurus)
SERPINA51
--
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, more
79.85(n) 72.14(a)
338050 NM_176646.2 NP_788819.1
rat (Rattus norvegicus)
Serpina51
--
serine (or cysteine) peptidase inhibitor, clade A, more
73.93(n) 64.11(a)
65051 NM_022957.2 NP_075246.2
mouse (Mus musculus)
Serpina51 , 5
125
serine (or cysteine) peptidase inhibitor, clade A, more 1, 5
73.51(n) 1 63.61(a) 1
268591 1 NM_172953.2 1 NP_766541.1 1 AH006766 5 AK077160 5 (see all 9 )
worm (Caenorhabditis elegans)
srp-13
V(753188-754813)
serine protease inhibitor
29(a)
--
About this table Species with no ortholog for SERPINA5 ENSEMBL Gene Tree for SERPINA5 Paralogs for SERPINA5 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SERPINA5 gene SERPINA1 2 SERPINA3 2 SERPINA2 2
SNPs/Variants for SERPINA5 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SERPINA5 (up to first 250kb)
Disorders & Mutations for SERPINA5
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601841
2 Novoseek disease relationships for SERPINA5 gene
About this table Genetic Association Database: SERPINA5 Human Genome Epidemiology Navigator: SERPINA5 (1 document)
Medical News for SERPINA5 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SERPINA5 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/90 PubMed articles for SERPINA5 gene (see all 90
): Organization of the gene coding for human protein C inhibitor (plasminogen activator inhibitor-3). Assignment of the gene to chromosome 14. (PubMed id 1714450) 1, 2, 3, 4 Meijers J.C.M. and Chung D.W. (1991) Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952) 3, 4 Liu T.... Smith R.D. (2005) Absence of mutations in the PCI gene in subfertile men. (PubMed id 15377716) 3, 6 Gianotten J....Meijers J.C. (2004) Screening for N-glycosylated proteins by liquid chromatography mass spectrometry. (PubMed id 14760718) 3, 4 Bunkenborg J.... Wisniewski J.R. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Characterization of single-nucleotide polymorphisms in coding regions of human genes. (PubMed id 10391209) 3, 4 Cargill M....Lander E.S. (1999) A two-allele polymorphism in protein C inhibitor with varying frequencies in different ethnic populations. (PubMed id 8713781) 3, 4 Radtke K.P....Griffin J.H. (1996) Human sperm-egg binding is inhibited by peptides corresponding to core region of an acrosomal serine protease inhibitor. (PubMed id 8471250) 3, 4 Moore A.... Moore H.D. (1993) Gene organization of human protein C inhibitor, a member of SERPIN family proteins encoded in five exons. (PubMed id 8148499) 3, 4 Hayashi T. and Suzuki K. (1993) Physical mapping of four serpin genes: alpha 1-antitrypsin, alpha 1-antichymotrypsin, corticosteroid-binding globulin, and protein C inhibitor, within a 280-kb region on chromosome I4q32.1. (PubMed id 8381582) 2, 3 Billingsley G.D....Cox D.W. (1993)
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Genome Databases showing SERPINA5
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SERPINA5
(According to HUGE )
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--
Specialized Databases showing SERPINA5 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
SeattleSNPs http://pga.gs.washington.edu/data/serpina5/
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-- Services for SERPINA5 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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