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SERPINA11 Gene

protein-coding   GIFtS: 43
GCID: GC14M094908

Serpin Peptidase Inhibitor, Clade A (Alpha-1 Antiproteinase,...

(Previous names: serine (or cysteine) proteinase inhibitor, clade A (alpha-1...)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Serpin Peptidase Inhibitor, Clade A (Alpha-1 Antiproteinase,
Antitrypsin), Member 111 2
Serine (Or Cysteine) Proteinase Inhibitor, Clade A (Alpha-1
Antiproteinase, Antitrypsin), Member 111 2
Antiproteinase-Like 22
Serpin A112

External Ids:    HGNC: 191931   Entrez Gene: 2563942   Ensembl: ENSG000001869107   UniProtKB: Q86U173   

Export aliases for SERPINA11 gene to outside databases

Previous GC identifers: GC14U900167 GC14M092919 GC14M092899 GC14M093979 GC14M075089


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SERPINA11 Gene:
SERPINA11 (serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11) is a protein-coding gene. GO annotations related to this gene include serine-type endopeptidase inhibitor activity. An important paralog of this gene is SERPING1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000014.8  NT_026437.13  NC_018925.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the SERPINA11 gene promoter:
         E2F-3a   E2F-4   E2F-5   p53   E2F-2   IRF-2   E2F-1   E2F   IRF-7A   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for SERPINA11

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SERPINA11


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.13   Ensembl cytogenetic band:  14q32.13   HGNC cytogenetic band: 14q32.13

SERPINA11 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SERPINA11 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M094908:  view genomic region     (about GC identifiers)

Start:
94,908,801 bp from pter      End:
94,919,127 bp from pter
Size:
10,327 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: SPA11_HUMAN, Q86U17 (See protein sequence)
Recommended Name: Serpin A11 precursor  
Size: 422 amino acids; 46989 Da
Sequence caution: Sequence=CAD62587.1; Type=Erroneous initiation;
Secondary accessions: B2RV07

Explore the universe of human proteins at neXtProt for SERPINA11: NX_Q86U17

Explore proteomics data for SERPINA11 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn94, Asn106, Asn169, Asn350

  • See SERPINA11 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001073920.1  
    ENSEMBL proteins: 
     ENSP00000335024  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    SERPIN: Serine (or cysteine) peptidase inhibitors

    2 InterPro protein domains:
     IPR000215 Serpin_fam
     IPR023796 Serpin_dom

    Graphical View of Domain Structure for InterPro Entry Q86U17

    ProtoNet protein and cluster: Q86U17

    1 Blocks protein domain: IPB000215 Serpin

    UniProtKB/Swiss-Prot: SPA11_HUMAN, Q86U17
    Similarity: Belongs to the serpin family


    Find genes that share domains with SERPINA11           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004867serine-type endopeptidase inhibitor activity IBA--
         
    Find genes that share ontologies with SERPINA11           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for SERPINA11

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    SPA11_HUMAN, Q86U17: Secreted (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular3
    cytosol1
    endoplasmic reticulum1
    lysosome1
    mitochondrion1
    peroxisome1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005615extracellular space IEA--

    Find genes that share ontologies with SERPINA11           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SERPINA11
    Interactions:

        Search GeneGlobe Interaction Network for SERPINA11

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    5 Interacting proteins for SERPINA11 (ENSP000003350244) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TPSAB1ENSP000003435774STRING: ENSP00000343577
    TPSD1ENSP000002110764STRING: ENSP00000211076
    PRSS36ENSP000002682814STRING: ENSP00000268281
    TMPRSS9ENSP000003302644STRING: ENSP00000330264
    --ENSP000004208254STRING: ENSP00000420825
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0010951negative regulation of endopeptidase activity IBA--
    GO:0030162regulation of proteolysis IBA--

    Find genes that share ontologies with SERPINA11           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SERPINA11 (SPA11)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SERPINA11 gene: 
    NM_001080451.1  

    Unigene Cluster for SERPINA11:

    Serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
    Hs.145890  [show with all ESTs]
    Unigene Representative Sequence: NM_001080451
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000334708(uc001ydd.1)
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      QuantiFast Probe-based Assays in human, mouse, rat SERPINA11

    Additional mRNA sequence: 

    BC146962.1 BX248259.1 

    1 DOTS entry:

    DT.433109 

    10 AceView cDNA sequences:

    AA337229 AI133094 BX248259 AA334524 BX463052 AA337234 AA337774 AI274750 
    BX463051 AI652967 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SERPINA11 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGTGAGAAGG
    SERPINA11 Expression
    About this image

    SERPINA11 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SERPINA11 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.145890
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for SERPINA11 gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Serpina111 , 5 serine (or cysteine) peptidase inhibitor, clade A (alpha-1 more1, 5 79.3(n)1
    75.36(a)1
      12 (52.98 cM)5
    3807801  NM_199314.21  NP_955018.21 
     1039802435 


    ENSEMBL Gene Tree for SERPINA11 (if available)
    TreeFam Gene Tree for SERPINA11 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for SERPINA11 gene
    SERPING12  SERPINA12  SERPINA102  SERPINA72  SERPINA122  SERPINA92  SERPINF12  SERPINA52  
    SERPIND12  SERPINA42  SERPINA32  SERPINA62  SERPINF22  
    Selected SIMAP similar genes for SERPINA11 using alignment to 1 protein entry:     SPA11_HUMAN(see all similar genes):
    SERPINA4    SERPINA7    SERPINA9    SERPINA1    SERPINA12    SERPINA3
    SERPINA6    SERPINA5    SERPINA2    SERPINI1    SERPINI2    SERPINA13P
    SERPINA2P    SERPINB3    SERPINB4    DKFZp686D06190    DKFZp686O07189    SCCA2

    Find genes that share paralogs with SERPINA11           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SERPINA11 (see all 415)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs798118141,2
    C--94908354(+) TGACAC/TGCTGT 1 -- ds50013Minor allele frequency- T:0.19CSA NA EA 242
    rs1882152151,2
    --94908398(+) GACCCA/GTGATT 1 -- ds50010--------
    rs170908621,2
    C,F,H--94908409(+) ACGCCG/AGCCCA 1 -- ds50018Minor allele frequency- A:0.08NA NS EA WA 544
    rs1925303401,2
    --94908467(+) CAGGTC/TCAACC 1 -- ds50010--------
    rs1489742581,2
    C--94908476(+) CCTCCC/TCTTGA 1 -- ds50010--------
    rs1848089691,2
    --94908527(+) ACAACC/TTCTCT 1 -- ds50010--------
    rs1116337561,2
    F--94908531(+) CCTCTG/CTTGTC 1 -- ds50012Minor allele frequency- C:0.50CSA 4
    rs1883593321,2
    --94908661(+) AGCAGC/TGGTGG 1 -- ds50010--------
    rs1124339841,2
    F--94908663(+) CAGCGC/GTGGAC 1 -- ds50012Minor allele frequency- G:0.33CSA 3
    rs1913732871,2
    --94908698(+) GGGTCA/GTTCTC 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for SERPINA11 (94908801 - 94919127 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for SERPINA11:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv1407CNV Insertion18451855
    nsv510649CNV Loss20534489
    nsv832864CNV Loss17160897
    nsv470662CNV Gain18288195
    nsv832863CNV Gain17160897

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with SERPINA11           About GenesLikeMe

    Genetic Association Database (GAD): SERPINA11

    Export disorders for SERPINA11 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SERPINA11 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with SERPINA11)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Update of the human and mouse SERPIN gene superfamily. (PubMed id 24172014)1, 3 Heit C....Vasiliou V. (Hum. Genomics 2013)
    2. Sequence organization and matrix attachment regions of the human serine protease inhibitor gene cluster at 14q32.1. (PubMed id 15014966)1, 3 Namciu S.J....Fournier R.E. (Mamm. Genome 2004)
    3. Genetically distinct subsets within ANCA-associated vasculitis. (PubMed id 22808956)1 Lyons P.A....Smith K.G. (N. Engl. J. Med. 2012)
    4. Genome-wide association for smoking cessation success: participants in the Patch in Practice trial of nicotine replacement. (PubMed id 20235792)4 Uhl G.R....MunafA^ M.R. (Pharmacogenomics 2010)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    7. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 256394 HGNC: 19193 AceView: SERPINA11 Ensembl:ENSG00000186910 euGenes: HUgn256394
    ECgene: SERPINA11 H-InvDB: SERPINA11

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SERPINA11 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SERPINA11 gene:
    Search GeneIP for patents involving SERPINA11

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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