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SERP2 Gene

protein-coding   GIFtS: 39
GCID: GC13P044947

Stress-Associated Endoplasmic Reticulum Protein Family Member...

(Previous name: chromosome 13 open reading frame 21)
(Previous symbol: C13orf21)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Stress-Associated Endoplasmic Reticulum Protein Family Member 21 2
C13orf211 2 3
Ribosome-Associated Membrane Protein RAMP4-22 3
Chromosome 13 Open Reading Frame 211
bA269C23.12
Stress-Associated Endoplasmic Reticulum Protein 22

External Ids:    HGNC: 206071   Entrez Gene: 3879232   Ensembl: ENSG000001517787   UniProtKB: Q8N6R13   

Export aliases for SERP2 gene to outside databases

Previous GC identifers: GC13P043845 GC13P025749


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SERP2 Gene:
SERP2 (stress-associated endoplasmic reticulum protein family member 2) is a protein-coding gene. Diseases associated with SERP2 include cowpox, and malaria. An important paralog of this gene is SERP1.

UniProtKB/Swiss-Prot: SERP2_HUMAN, Q8N6R1
Function: May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May
protect unfolded target proteins against degradation and facilitate correct glycosylation (Potential)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000013.11  NC_018924.2  NT_024524.15  
Regulatory elements:
   Regulatory transcription factor binding sites in the SERP2 gene promoter:
         LCR-F1   PPAR-alpha   Pax-3   PPAR-gamma1   FOXJ2 (long isoform)   FOXJ2   PPAR-gamma2   Pax-4a   Hlf   En-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSERP2 promoter sequence
   Search Chromatin IP Primers for SERP2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SERP2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q14.11   Ensembl cytogenetic band:  13q14.11   HGNC cytogenetic band: 13q14.11

SERP2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SERP2 gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13P044947:  view genomic region     (about GC identifiers)

Start:
44,947,801 bp from pter      End:
44,971,850 bp from pter
Size:
24,050 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: SERP2_HUMAN, Q8N6R1 (See protein sequence)
Recommended Name: Stress-associated endoplasmic reticulum protein 2  
Size: 65 amino acids; 7431 Da

Explore the universe of human proteins at neXtProt for SERP2: NX_Q8N6R1

Explore proteomics data for SERP2 at MOPED


See SERP2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001010897.1  
ENSEMBL proteins: 
 ENSP00000433253   ENSP00000368477   ENSP00000435473  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR010580 ER_stress-assoc

Graphical View of Domain Structure for InterPro Entry Q8N6R1

ProtoNet protein and cluster: Q8N6R1

UniProtKB/Swiss-Prot: SERP2_HUMAN, Q8N6R1
Similarity: Belongs to the RAMP4 family


SERP2 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: SERP2_HUMAN, Q8N6R1
Function: May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May
protect unfolded target proteins against degradation and facilitate correct glycosylation (Potential)

Animal Models:

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hsa-miR-641 hsa-miR-3617
SwitchGear 3'UTR luciferase reporter plasmidSERP2 3' UTR sequence
Inhib. RNA
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SERP2


(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
SERP2_HUMAN, Q8N6R1: Membrane; Single-pass type IV membrane protein. Endoplasmic reticulum membrane; Single-pass
membrane protein; Cytoplasmic side (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
endoplasmic reticulum5
mitochondrion2
cytoskeleton1
cytosol1
extracellular1
golgi apparatus1
nucleus1
plasma membrane1

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005783endoplasmic reticulum ----
GO:0005789endoplasmic reticulum membrane IEA--
GO:0016021integral component of membrane IEA--

SERP2 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SERP2
Interactions:

    Search GeneGlobe Interaction Network for SERP2

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

3 Interacting proteins for SERP2 (Q8N6R13 ENSP000003684774) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
CKBP122773, ENSP000002991984I2D: score=3 STRING: ENSP00000299198
EWSR1Q018443, ENSP000003810314I2D: score=2 STRING: ENSP00000381031
--Q96MX43I2D: score=1 
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Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0015031protein transport IEA--

SERP2 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for SERP2



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for SERP2 gene: 
NM_001010897.1  

Unigene Cluster for SERP2:

Stress-associated endoplasmic reticulum protein family member 2
Hs.377972  [show with all ESTs]
Unigene Representative Sequence: AK123212
3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000474333 ENST00000379179(uc001uzj.3) ENST00000493476(uc021riy.1)

miRNA
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2 qRT-PCR Assays for microRNAs that regulate SERP2:
hsa-miR-641 hsa-miR-3617
SwitchGear 3'UTR luciferase reporter plasmidSERP2 3' UTR sequence
Inhib. RNA
Products:
     
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Predesigned siRNA for gene silencing in human, mouse, rat SERP2
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Primer
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Additional mRNA sequence: 

AK123212.1 BC029067.1 

4 DOTS entries:

DT.444436  DT.91678660  DT.95150911  DT.426564 

Selected AceView cDNA sequences (see all 83):

AA493194 BU951187 AI695047 AW294698 AA485113 AI916497 CR611312 AA284254 
AI268964 AA485066 AA485112 AA251005 AI342808 AA485162 AK026218 BG149210 
BE549925 BF509416 AA435873 AL519949 BE856025 BX356905 CA396863 BF195506 

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for SERP2    About this scheme

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c
SP1:                                -                           
SP2:                                -     -                     
SP3:                                -     -                     
SP4:                                      -                     


ECgene alternative splicing isoforms for SERP2

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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SERP2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TGGCCCTCTG
SERP2 Expression
About this image

SERP2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

SERP2 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.377972
    Custom PCR Arrays for SERP2
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SERP2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for SERP2 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Serp21 , 5 stress-associated endoplasmic reticulum protein family more1, 5 95.38(n)1
100(a)1
  14 (40.44 cM)5
726611  NM_001160326.11  NP_001153798.11 
 765328145 
tropical clawed frog
(Xenopus tropicalis)
Amphibia serp21 stress-associated endoplasmic reticulum protein family more 87.18(n)
100(a)
  779835  NM_001171602.1  NP_001165073.1 
zebrafish
(Danio rerio)
Actinopterygii wufc96h112 Transcribed sequence with moderate similarity to protein more 80.79(n)    AL926796.1 
fruit fly
(Drosophila melanogaster)
Insecta CG322766
--
59(a)
1 → many
3L(3197863-3199047)
worm
(Caenorhabditis elegans)
Secernentea F59F4.26
T09A12.56
Protein T09A12.5 (T09A12.5) mRNA, complete cds
60(a)
54(a)
many ↔ many
many ↔ many
X(15841572-15842473) WBGene00010337
IV(8225676-8226761) WBGene00020374


ENSEMBL Gene Tree for SERP2 (if available)
TreeFam Gene Tree for SERP2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for SERP2 gene
SERP12  
1 SIMAP similar gene for SERP2 using alignment to 3 protein entries:     SERP2_HUMAN (see all proteins):
SERP1

SERP2 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for SERP2 (see all 458)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 13 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1117153271,2
C,F--25747749(+) GTGAAG/ACATAG 1 -- us2k11Minor allele frequency- A:0.50NA 2
rs1152736041,2
F--25747767(+) AAGGAG/CTCAAC 1 -- us2k11Minor allele frequency- C:0.02WA 118
rs1471702431,2
--25747784(+) GAAAAA/GTTTTC 1 -- us2k10--------
rs1889174991,2
--25747894(+) ATGTCA/GCTCAG 1 -- us2k10--------
rs740691111,2
C--25747911(+) ACCTCT/CACTCA 1 -- us2k13Minor allele frequency- C:0.06WA CSA 121
rs1145565251,2
F--25747943(+) TCTCCT/CGGTAT 1 -- us2k11Minor allele frequency- C:0.02WA 118
rs740691161,2
C,F--25747958(+) ACATGA/GTCTGA 1 -- us2k13Minor allele frequency- G:0.17WA CSA 121
rs1930463271,2
--25748097(+) CTAGAC/GTGGGG 1 -- us2k10--------
rs1154115831,2
C,F--25748209(+) AAAAAT/AGACTC 1 -- us2k11Minor allele frequency- A:0.03WA 118
rs2001801661,2
C--25748209(+) AAAAA-/AA/T  
        
GACTC
1 -- us2k10--------

HapMap Linkage Disequilibrium report for SERP2 (44947801 - 44971850 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for SERP2: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing SERP2
DNA2.0 Custom Variant and Variant Library Synthesis for SERP2

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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2 diseases for SERP2:    
About MalaCards
cowpox    malaria


SERP2 for disorders           About GeneDecksing


Export disorders for SERP2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for SERP2 gene integrated from 10 sources:
(articles sorted by number of sources associating them with SERP2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)1, 2 Dunham A.... Ross M.T. (Nature 2004)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (Nature 2005)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 387923 HGNC: 20607 AceView: C13orf21 Ensembl:ENSG00000151778 euGenes: HUgn387923
ECgene: SERP2 H-InvDB: SERP2

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for SERP2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for SERP2 gene:
Search GeneIP for patents involving SERP2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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