SERINC2 Gene
protein-coding GIFtS : 46
GCID: GC01 P031883
serine incorporator 2 (Previous name: tumor differentially expressed 2-like ) (Previous symbol: TDE2L )
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Aliasesfor SERINC2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Serine Incorporator 2 1 2 FKSG841 TDE2L1 2 3 Tumor Differentially Expressed 2-Like1 PRO08991 2 Tumor Differentially Expressed Protein 22 TDE21 2 Tumor Differentially Expressed Protein 2-Like3
Export aliases for SERINC2 gene to outside databases Previous GC identifers: GC01P031556 GC01P031659 GC01P030003
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Summariesfor SERINC2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor SERINC2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_032977.9 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SERINC2 gene promoter: Max1 Tal-1 Pax-2 AP-4 E47 AREB6 RORalpha1 POU2F1 POU2F1a c-Myc Other transcription factors Search SABiosciences Chromatin IP Primers for SERINC2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SERINC2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p35.1 Ensembl cytogenetic band: 1p35.2 HGNC cytogenetic band: 1p35.1 SERINC2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P031883: view genomic region
(about GC identifiers )
Start:
31,882,412 bp from pter
End:
31,907,525 bp from pter
Size:
25,114 bases
Orientation:
plus strand
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Proteinsfor SERINC2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SERC2_HUMAN, Q96SA4 (See
protein sequence )Recommended Name: Serine incorporator 2 Size : 455 amino acids; 50742 Da
Subcellular location : Membrane; Multi-pass membrane protein (Potential)
Secondary accessions : A0AVB4 B4DJK5 B7Z567 B7ZAP2 Q86Y23Alternative splicing : 3 isoforms : Q96SA4-1 Q96SA4-2 Q96SA4-3 Explore the universe of human proteins at neXtProt for SERINC2: NX_Q96SA4 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q96SA4 SERINC2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (5 alternative transcripts):
NP_001185966.1 NP_001185967.1 NP_001185968.1 NP_061035.2 NP_849196.2 ENSEMBL proteins: ENSP00000362814 ENSP00000362813 ENSP00000444307 ENSP00000439048 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
SERINC2 for ontologies About GeneDecksing SERINC2 Antibody Products: Assay Products for SERINC2:
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Protein
Domains / Familiesfor SERINC2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SERINC2 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q96SA4 ProtoNet protein and cluster: Q96SA4
1 Blocks protein family : IPB005016 TMS membrane protein/tumour differentially expressed protein UniProtKB/Swiss-Prot: SERC2_HUMAN, Q96SA4 Similarity : Belongs to the TDE1 family
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Functionfor SERINC2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SERINC2 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SERINC2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 5 ): SERINC2 (NM_018565 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SERINC2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SERINC2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SERINC2
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Pathways & Interactionsfor SERINC2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SERINC2
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Drugs & Compoundsfor SERINC2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SERINC2 Search CenterWatch for drugs/clinical trials and news about SERINC2 / SERC2
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Transcriptsfor SERINC2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SERINC2 gene (5 alternative transcripts): NM_001199037.1 NM_001199038.1 NM_001199039.1 NM_018565.3 NM_178865.4 Unigene Cluster for SERINC2:
Serine incorporator 2 Hs.270655 [show with all ESTs ] Unigene Representative Sequence: NM_001199039 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000373710 (uc021okm.1 ) ENST00000487207 ENST00000373709 (uc009vtw.1 uc001bst.3 )ENST00000491976 (uc001bsu.3 uc010ogh.2 ) ENST00000536859 (uc010ogg.2 )ENST00000536384 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SERINC2 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SERINC2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 5 ): SERINC2 (NM_018565 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SERINC2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SERINC2
Additional cDNA sequence: AF352325.1 AK093784.1 AK127659.1 AK296118.1 AK298512.1 AK308031.1 AK309409.1 AK316357.1 AY094595.1 AY358560.1 BC007375.2 BC017085.1 BC063006.1 BC084580.1 BC126283.1 BC126285.1
18 DOTS entries : DT.316537 DT.100758464
DT.95320485 DT.100823748 DT.100823754 DT.121451295 DT.40122005 DT.92406956 DT.92445896 DT.95320486 DT.97801492 DT.100728678 DT.101975303 DT.97859374 DT.100677018 DT.40247323 DT.95150676 DT.95153281 24/333 AceView cDNA sequences (see all 333 ):
CA487391 BU944634 CR619066 CR621050 CR605110 CR608200 BM744125 BG678618 CB120695 CR618465 CR620507 BQ954795 AL703499 CR606889 BQ953071 BM824140 CA489834 CR622064 CA454794 BM786140 CR626785 CR613892 CA454038 CR611236 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for SERINC2 (see all 11 ) About this scheme ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b · 11c · 11d ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b · 15c ^ SP1 :           -   -   -   -   -                                   SP2 :           -   -   -   -   -                                   SP3 :               -   -   -                                   SP4 :   -   -   -   -   -   -   -   -   -                                   SP5 :             -   -   -   -                                  
ExUns: 16 ^ 17 SP1 :     SP2 :     SP3 :     SP4 :     SP5 :    
ECgene alternative splicing isoforms for SERINC2
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Expression for SERINC2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SERINC2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATGACGCTCA
About this image SERINC2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Heart Atrioventricular Node Atrioventricular Node Cells Myocardium Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See SERINC2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SERINC2 SOURCE GeneReport for Unigene cluster: Hs.270655 SABiosciences Custom PCR Arrays for SERINC2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SERINC2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat SERINC2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SERINC2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SERINC2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SERINC2
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Orthologsfor SERINC2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for SERINC2 gene from 8/25 species (see all 25 ) About this table
ENSEMBL Gene Tree for SERINC2 (if available)TreeFam Gene Tree for SERINC2 (if available)
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Paralogsfor SERINC2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SERINC2 gene ENSG00000262560 2 SERINC4 2 SERINC3 2 SERINC1 2 SERINC5 2 4 SIMAP similar genes for SERINC2 using alignment to 5 protein entries: SERC2_HUMAN (see all proteins ):SERINC1 SERINC3 SERINC5 SERINC4
SERINC2 for paralogs About GeneDecksing
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Genomic Variantsfor SERINC2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SERINC2 (31882412 - 31907525 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 8 variations for SERINC2 7 CNVs : 84167 74437 2304 74436 84168 3287 74438 1 Indel : 68350
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SERINC2
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Disorders
/ Diseasesfor SERINC2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SERINC2 for disorders About GeneDecksing
OMIM gene information: 614549
OMIM disorders : --1 disease for SERINC2 : About MalaCards lung cancer Export disorders for SERINC2 gene to outside databases
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Publicationsfor SERINC2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SERINC2 gene integrated from 9 sources : (articles sorted by number of sources associating them with SERINC2) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Identification of TDE2 gene and its expression in non-small cell lung cancer. (PubMed id 12949800) 1 , 3 Player A....Jen J. (2003) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 2 Gregory S.G.... Bentley D.R. (2006) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 1 Hillier L.W....Wilson R.K. (2005) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id ) 2 Aoki H.... Hino O. (2000) Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 9872452) 1 Nagase T.... Ohara O. (1998)
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External Searches for SERINC2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SERINC2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SERINC2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SERINC2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for SERINC2 gene: Search GeneIP for patents involving SERINC2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SERINC2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SERINC2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SERINC2 OriGene Protein Over-expression Lysate for SERINC2 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SERINC2 OriGene 3'-UTR Clone for SERINC2 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SERINC2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SERINC2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SERINC2 OriGene Custom Protein Services for SERINC2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SERINC2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SERINC2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SERINC2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SERINC2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SERINC2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SERINC2
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SERINC2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SERINC2
Search ThermoFisher Antibodies for SERINC2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SERINC2
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Aliases for SERINC2
Databases for SERINC2
Disorders / Diseases for SERINC2
Domains / Families for SERINC2
Drugs / Compounds for SERINC2
Expression for SERINC2
Function for SERINC2
Genomic Views for SERINC2
Intellectual Property for SERINC2
Orthologs for SERINC2
Paralogs for SERINC2
Pathways / Interactions for SERINC2
Products for SERINC2
Proteins for SERINC2
Publications for SERINC2
Search Box for SERINC2
Summaries for SERINC2
Transcripts for SERINC2
Variants for SERINC2
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