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Aliases for SERF2-C15ORF63 Gene

Subcategory (RNA class) for SERF2-C15ORF63 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for SERF2-C15ORF63 Gene

  • SERF2-C15orf63 Readthrough 3

External Ids for SERF2-C15ORF63 Gene

Previous GeneCards Identifiers for SERF2-C15ORF63 Gene

  • GC15U901309
  • GC15P044093
  • GC15P044096

Summaries for SERF2-C15ORF63 Gene

Entrez Gene Summary for SERF2-C15ORF63 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring small EDRK-rich factor 2 (SERF2) and chromosome 15 open reading frame 63 (C15orf63) genes. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD) based on the use of the supported SERF2 start codon, and is therefore unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for SERF2-C15ORF63 Gene

SERF2-C15ORF63 (SERF2-C15orf63 Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SERF2-C15ORF63 Gene

Genomics for SERF2-C15ORF63 Gene

Regulatory Elements for SERF2-C15ORF63 Gene

Enhancers for SERF2-C15ORF63 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F043788 1.1 ENCODE 0.8 -2.9 -2935 1.7 HDGF MTA2 SUZ12 NR2F1 JUNB CEBPB POLR2A SMARCA4 NBN ZBTB33 ADAL STRCP1 SERF2-C15ORF63 ENSG00000279808
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SERF2-C15ORF63 on UCSC Golden Path with GeneCards custom track

Promoters for SERF2-C15ORF63 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000020758 624 2001 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 YY1 SLC30A9

Genomic Location for SERF2-C15ORF63 Gene

Chromosome:
15
Start:
43,791,976 bp from pter
End:
43,802,589 bp from pter
Size:
10,614 bases
Orientation:
Plus strand

Genomic View for SERF2-C15ORF63 Gene

Genes around SERF2-C15ORF63 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SERF2-C15ORF63 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SERF2-C15ORF63 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SERF2-C15ORF63 Gene

Proteins for SERF2-C15ORF63 Gene

Post-translational modifications for SERF2-C15ORF63 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SERF2-C15ORF63 Gene

Domains & Families for SERF2-C15ORF63 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SERF2-C15ORF63 Gene

Function for SERF2-C15ORF63 Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SERF2-C15ORF63 Gene

Localization for SERF2-C15ORF63 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SERF2-C15ORF63 Gene

Pathways & Interactions for SERF2-C15ORF63 Gene

SuperPathways for SERF2-C15ORF63 Gene

No Data Available

Interacting Proteins for SERF2-C15ORF63 Gene

Gene Ontology (GO) - Biological Process for SERF2-C15ORF63 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SERF2-C15ORF63 Gene

Transcripts for SERF2-C15ORF63 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SERF2-C15ORF63 Gene

No ASD Table

Relevant External Links for SERF2-C15ORF63 Gene

GeneLoc Exon Structure for
SERF2-C15ORF63

No data available for mRNA/cDNA for SERF2-C15ORF63 Gene

Expression for SERF2-C15ORF63 Gene

mRNA expression in normal human tissues for SERF2-C15ORF63 Gene

genes like me logo Genes that share expression patterns with SERF2-C15ORF63: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SERF2-C15ORF63 Gene

Orthologs for SERF2-C15ORF63 Gene

No data available for Orthologs and Evolution for SERF2-C15ORF63 Gene

Paralogs for SERF2-C15ORF63 Gene

No data available for Paralogs for SERF2-C15ORF63 Gene

Variants for SERF2-C15ORF63 Gene

Sequence variations from dbSNP and Humsavar for SERF2-C15ORF63 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1049531 -- 43,793,843(+) CTCGC(G/T)TTTCC intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon, utr-variant-3-prime
rs111392388 -- 43,792,377(+) TCGCC(A/C/T)TGACC nc-transcript-variant, reference, missense, utr-variant-5-prime
rs111393349 -- 43,791,421(+) TTTTA(-/GTAGAAAC)GGGTT intron-variant, upstream-variant-2KB
rs111687546 -- 43,793,085(+) AGAGG(G/T)AGCCC splice-donor-variant
rs111691872 -- 43,797,827(+) TGGGA(C/G)CAGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SERF2-C15ORF63 Gene

Variant ID Type Subtype PubMed ID
esv2760028 CNV gain+loss 17122850
nsv1036318 CNV gain 25217958
nsv1050263 CNV loss 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for SERF2-C15ORF63 Gene

Disorders for SERF2-C15ORF63 Gene

Relevant External Links for SERF2-C15ORF63

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SERF2-C15ORF63

No disorders were found for SERF2-C15ORF63 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SERF2-C15ORF63 Gene

Publications for SERF2-C15ORF63 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for SERF2-C15ORF63 Gene

Sources for SERF2-C15ORF63 Gene

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