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Aliases for SEPT7P9 Gene

Aliases for SEPT7P9 Gene

  • Septin 7 Pseudogene 9 2 3 5
  • Septin 7-Like 2 3
  • CDC10 Cell Division Cycle 10 Homolog (S. Cerevisiae) Like 2
  • CDC10 Cell Division Cycle 10 Homolog (S. Cerevisiae)-Like 2
  • CDC10 Cell Division Cycle 10 Homolog-Like 3
  • CDC10-Like 3
  • BA291L22.2 3
  • CDC10L 3
  • SEPT7L 3

External Ids for SEPT7P9 Gene

Previous HGNC Symbols for SEPT7P9 Gene

  • CDC10L
  • SEPT7L

Previous GeneCards Identifiers for SEPT7P9 Gene

  • GC10M038678

Summaries for SEPT7P9 Gene

GeneCards Summary for SEPT7P9 Gene

SEPT7P9 (Septin 7 Pseudogene 9) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEPT7P9 Gene

Genomics for SEPT7P9 Gene

Regulatory Elements for SEPT7P9 Gene

Enhancers for SEPT7P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F038009 1.1 ENCODE 11.3 +392.0 391967 3.0 HDGF CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 ZNF25 ENSG00000226447 SEPT7P9 HSD17B7P2 ZNF33A RNU6-795P
GH10F038401 1 ENCODE 10.7 0.0 -25 2.8 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 GLIS2 ELK1 HSD17B7P2 ENSG00000272983 SEPT7P9 LINC00999 SLC9B1P3 ENSG00000226447 LOC101929540
GH10F037734 0.6 ENCODE 9.3 +667.6 667643 0.9 DPF2 ZNF644 ARID1B JUND GATA3 SMARCA4 ATF3 FOS TRIM24 ZNF25 ZNF248 SEPT7P9 HSD17B7P2 GC10P037760 LOC105376498
GH10F037488 1.2 FANTOM5 Ensembl ENCODE 4 +913.3 913343 1.8 CTCF RFX1 MAX DPF2 HIC1 GATA3 JUND IKZF1 GLIS1 EHMT2 ENSG00000272983 SEPT7P9 TACC1P1 LOC105376497
GH10F038396 0.2 Ensembl 10.6 +6.5 6516 0.8 HSD17B7P2 SEPT7P9 GC10P038391
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SEPT7P9 on UCSC Golden Path with GeneCards custom track

Promoters for SEPT7P9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001595247 316 2801 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 GLIS2 ELK1

Genomic Location for SEPT7P9 Gene

Chromosome:
10
Start:
38,383,069 bp from pter
End:
38,402,916 bp from pter
Size:
19,848 bases
Orientation:
Minus strand

Genomic View for SEPT7P9 Gene

Genes around SEPT7P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPT7P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPT7P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEPT7P9 Gene

Proteins for SEPT7P9 Gene

Post-translational modifications for SEPT7P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPT7P9 Gene

Domains & Families for SEPT7P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEPT7P9 Gene

Function for SEPT7P9 Gene

Phenotypes for SEPT7P9 Gene

GenomeRNAi human phenotypes for SEPT7P9:
genes like me logo Genes that share phenotypes with SEPT7P9: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPT7P9 Gene

Localization for SEPT7P9 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SEPT7P9 gene
Compartment Confidence
extracellular 3
cytosol 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SEPT7P9 Gene

Pathways & Interactions for SEPT7P9 Gene

SuperPathways for SEPT7P9 Gene

No Data Available

Interacting Proteins for SEPT7P9 Gene

Gene Ontology (GO) - Biological Process for SEPT7P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEPT7P9 Gene

Transcripts for SEPT7P9 Gene

mRNA/cDNA for SEPT7P9 Gene

(11) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SEPT7P9 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5
SP1: -
SP2: -

Relevant External Links for SEPT7P9 Gene

GeneLoc Exon Structure for
SEPT7P9
ECgene alternative splicing isoforms for
SEPT7P9

Expression for SEPT7P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SEPT7P9 Gene

mRNA differential expression in normal tissues according to GTEx for SEPT7P9 Gene

This gene is overexpressed in Testis (x29.4).

Protein differential expression in normal tissues from HIPED for SEPT7P9 Gene

This gene is overexpressed in Lung (24.2), Skin (18.2), Brain (16.4), and Heart (10.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SEPT7P9 Gene



Protein tissue co-expression partners for SEPT7P9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SEPT7P9 Gene:

SEPT7P9
genes like me logo Genes that share expression patterns with SEPT7P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SEPT7P9 Gene

Orthologs for SEPT7P9 Gene

Evolution for SEPT7P9 Gene

ENSEMBL:
Gene Tree for SEPT7P9 (if available)
TreeFam:
Gene Tree for SEPT7P9 (if available)

No data available for Orthologs for SEPT7P9 Gene

Paralogs for SEPT7P9 Gene

No data available for Paralogs for SEPT7P9 Gene

Variants for SEPT7P9 Gene

Sequence variations from dbSNP and Humsavar for SEPT7P9 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs11011553 -- 38,390,958(+) AAAAA(A/C)ACAAG intron-variant
rs11011554 -- 38,392,614(+) ACTTA(C/T)GGAAA intron-variant
rs11011555 -- 38,392,938(+) TAAAA(C/T)GTTAA intron-variant
rs11011557 -- 38,403,966(+) GCTCC(G/T)CCAGG intron-variant, upstream-variant-2KB
rs112109383 -- 38,384,517(+) TAGGG(A/C)AGCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SEPT7P9 Gene

Variant ID Type Subtype PubMed ID
nsv947860 CNV duplication 23825009
nsv947859 CNV duplication 23825009
nsv428230 CNV loss 18775914
esv3576438 CNV gain 25503493
esv2759744 CNV gain+loss 17122850
dgv709n100 CNV gain 25217958
dgv10e203 CNV gain 21179565

Relevant External Links for SEPT7P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPT7P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEPT7P9 Gene

Disorders for SEPT7P9 Gene

Relevant External Links for SEPT7P9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SEPT7P9

No disorders were found for SEPT7P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPT7P9 Gene

Publications for SEPT7P9 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SEPT7P9 Gene

Sources for SEPT7P9 Gene

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