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Aliases for SEPT7P2 Gene

Aliases for SEPT7P2 Gene

  • Septin 7 Pseudogene 2 2 3 5
  • Septin 7B 2 3
  • Septin 13 2 3
  • SEPT13 3
  • SEPT7B 3

External Ids for SEPT7P2 Gene

Previous HGNC Symbols for SEPT7P2 Gene

  • SEPT7B
  • SEPT13

Previous GeneCards Identifiers for SEPT7P2 Gene

  • GC07M045763
  • GC07M045647

Summaries for SEPT7P2 Gene

Entrez Gene Summary for SEPT7P2 Gene

  • Septins, such as SEPT13, are conserved GTP-binding proteins that function as dynamic, regulatable scaffolds for the recruitment of other proteins. They are involved in membrane dynamics, vesicle trafficking, apoptosis, and cytoskeleton remodeling, as well as infection, neurodegeneration, and neoplasia (Hall et al., 2005 [PubMed 15915442]).[supplied by OMIM, Jul 2008]

GeneCards Summary for SEPT7P2 Gene

SEPT7P2 (Septin 7 Pseudogene 2) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEPT7P2 Gene

Genomics for SEPT7P2 Gene

Regulatory Elements for SEPT7P2 Gene

Enhancers for SEPT7P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F045767 1.1 ENCODE 40.6 +0.3 285 2.2 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 SP3 NFYC SEPT7P2 GTF2IP13 PIR48906
GH07F045760 0.8 Ensembl ENCODE 40.6 +6.8 6838 2.6 MIER1 PRDM10 REST MAFK SEPT7P2 PIR48906
GH07F044795 1.2 ENCODE 13 +971.6 971577 4.1 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZMIZ2 H2AFV ENSG00000228596 ELK1P1 SEPT7P2 SNORA5C LINC01952 SNORA5B DDX56 SNHG15
GH07F044963 0.6 ENCODE 14.3 +806.2 806168 0.7 RING1 CTCF ZNF316 SMARCA4 POLR2A MAX ZBTB33 EZH2 SEPT7P2 DDX56 ENSG00000260997 MYO1G
GH07F045797 0.2 ENCODE 38.7 -28.6 -28618 0.8 SEPT7P2 PIR44121 LOC730234
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SEPT7P2 on UCSC Golden Path with GeneCards custom track

Promoters for SEPT7P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001559623 318 2201 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 SP3 NFYC

Genomic Location for SEPT7P2 Gene

Chromosome:
7
Start:
45,723,780 bp from pter
End:
45,769,018 bp from pter
Size:
45,239 bases
Orientation:
Minus strand

Genomic View for SEPT7P2 Gene

Genes around SEPT7P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPT7P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPT7P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEPT7P2 Gene

Proteins for SEPT7P2 Gene

Post-translational modifications for SEPT7P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPT7P2 Gene

Domains & Families for SEPT7P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEPT7P2 Gene

Function for SEPT7P2 Gene

Phenotypes for SEPT7P2 Gene

GenomeRNAi human phenotypes for SEPT7P2:
genes like me logo Genes that share phenotypes with SEPT7P2: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPT7P2 Gene

Localization for SEPT7P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SEPT7P2 Gene

Pathways & Interactions for SEPT7P2 Gene

SuperPathways for SEPT7P2 Gene

No Data Available

Interacting Proteins for SEPT7P2 Gene

Gene Ontology (GO) - Biological Process for SEPT7P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEPT7P2 Gene

Transcripts for SEPT7P2 Gene

mRNA/cDNA for SEPT7P2 Gene

(5) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SEPT7P2 Gene

Septin 7 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SEPT7P2 Gene

No ASD Table

Relevant External Links for SEPT7P2 Gene

GeneLoc Exon Structure for
SEPT7P2
ECgene alternative splicing isoforms for
SEPT7P2

Expression for SEPT7P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SEPT7P2 Gene

Protein differential expression in normal tissues from HIPED for SEPT7P2 Gene

This gene is overexpressed in Brain (47.4), Heart (11.2), and Lung (10.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SEPT7P2 Gene



Protein tissue co-expression partners for SEPT7P2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SEPT7P2 Gene:

SEPT7P2

SOURCE GeneReport for Unigene cluster for SEPT7P2 Gene:

Hs.723477
genes like me logo Genes that share expression patterns with SEPT7P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SEPT7P2 Gene

Orthologs for SEPT7P2 Gene

Evolution for SEPT7P2 Gene

ENSEMBL:
Gene Tree for SEPT7P2 (if available)
TreeFam:
Gene Tree for SEPT7P2 (if available)

No data available for Orthologs for SEPT7P2 Gene

Paralogs for SEPT7P2 Gene

No data available for Paralogs for SEPT7P2 Gene

Variants for SEPT7P2 Gene

Sequence variations from dbSNP and Humsavar for SEPT7P2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1004028 -- 45,761,447(-) TTTTT(A/G)AACAG intron-variant
rs10046483 -- 45,725,642(+) TTGCC(A/G)TTGAT intron-variant
rs10226339 -- 45,735,303(+) GTCTT(C/T)GTTTT intron-variant
rs10233661 -- 45,742,482(+) TTTTA(C/G)ATAAT intron-variant
rs10234495 -- 45,764,207(+) CTTAC(A/T)TAGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SEPT7P2 Gene

Variant ID Type Subtype PubMed ID
dgv432e215 CNV deletion 23714750
esv2088604 CNV deletion 18987734
esv2734336 CNV deletion 23290073
esv3613030 CNV loss 21293372
esv3891103 CNV loss 25118596
nsv1015774 CNV loss 25217958
nsv966790 CNV duplication 23825009

Relevant External Links for SEPT7P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPT7P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEPT7P2 Gene

Disorders for SEPT7P2 Gene

Relevant External Links for SEPT7P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SEPT7P2

No disorders were found for SEPT7P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPT7P2 Gene

Publications for SEPT7P2 Gene

  1. Expression profiling the human septin gene family. (PMID: 15915442) Hall P.A. … Russell S.E.H. (J. Pathol. 2005) 2 3 64
  2. Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes? (PMID: 23314748) Nathan J.A. … Goldberg A.L. (EMBO J. 2013) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 64

Products for SEPT7P2 Gene

Sources for SEPT7P2 Gene

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