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Aliases for SEPT7P2 Gene

Aliases for SEPT7P2 Gene

  • Septin 7 Pseudogene 2 2 3 5
  • Septin 7B 2 3
  • Septin 13 2 3
  • SEPT13 3
  • SEPT7B 3

External Ids for SEPT7P2 Gene

Previous HGNC Symbols for SEPT7P2 Gene

  • SEPT7B
  • SEPT13

Previous GeneCards Identifiers for SEPT7P2 Gene

  • GC07M045763
  • GC07M045647

Summaries for SEPT7P2 Gene

Entrez Gene Summary for SEPT7P2 Gene

  • Septins, such as SEPT13, are conserved GTP-binding proteins that function as dynamic, regulatable scaffolds for the recruitment of other proteins. They are involved in membrane dynamics, vesicle trafficking, apoptosis, and cytoskeleton remodeling, as well as infection, neurodegeneration, and neoplasia (Hall et al., 2005 [PubMed 15915442]).[supplied by OMIM, Jul 2008]

GeneCards Summary for SEPT7P2 Gene

SEPT7P2 (Septin 7 Pseudogene 2) is a Pseudogene.

Additional gene information for SEPT7P2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEPT7P2 Gene

Genomics for SEPT7P2 Gene

GeneHancer (GH) Regulatory Elements for SEPT7P2 Gene

Promoters and enhancers for SEPT7P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I045767 Promoter/Enhancer 1.5 Ensembl ENCODE 590.6 +0.3 285 2.2 PKNOX1 ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF207 ZNF143 SP3 SEPT7P2 GTF2IP13 PIR55252 GC07M045767 PIR48906
GH07I044795 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 28.3 +971.6 971577 4.1 CLOCK ZFP64 DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 SP3 NFYC PPIA GC07P044797 LOC105375259 GC07P044796 SEPT7P2 SNORA5C POLM DDX56 SNORA5B ENSG00000228434
GH07I044845 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.2 +921.4 921434 4.2 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC GLIS1 H2AFV LINC01952 CICP20 DDX56 SNORA5C POLM SNORA5B ENSG00000228434 SPDYE1 TMED4
GH07I045760 Enhancer 0.5 Ensembl ENCODE 40.6 +6.8 6837 2.6 PRDM10 SEPT7P2 PIR48906
GH07I044961 Enhancer 0.8 Ensembl ENCODE 14.3 +806.1 806128 1.9 RING1 CTCF MAX USF2 ZBTB8A POLR2A ZBTB33 EZH2 ENSG00000260997 PURB SEPT7P2 DDX56 ENSG00000228596 TMED4 MYO1G
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SEPT7P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SEPT7P2 Gene

Genomic Locations for SEPT7P2 Gene
chr7:45,723,780-45,769,018
(GRCh38/hg38)
Size:
45,239 bases
Orientation:
Minus strand
chr7:45,763,379-45,808,617
(GRCh37/hg19)

Genomic View for SEPT7P2 Gene

Genes around SEPT7P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPT7P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPT7P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEPT7P2 Gene

Proteins for SEPT7P2 Gene

Post-translational modifications for SEPT7P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPT7P2 Gene

Domains & Families for SEPT7P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEPT7P2 Gene

Function for SEPT7P2 Gene

Phenotypes From GWAS Catalog for SEPT7P2 Gene

Phenotypes for SEPT7P2 Gene

GenomeRNAi human phenotypes for SEPT7P2:
genes like me logo Genes that share phenotypes with SEPT7P2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPT7P2 Gene

Localization for SEPT7P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEPT7P2 Gene

Pathways & Interactions for SEPT7P2 Gene

SuperPathways for SEPT7P2 Gene

No Data Available

Interacting Proteins for SEPT7P2 Gene

Gene Ontology (GO) - Biological Process for SEPT7P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEPT7P2 Gene

Drugs & Compounds for SEPT7P2 Gene

No Compound Related Data Available

Transcripts for SEPT7P2 Gene

mRNA/cDNA for SEPT7P2 Gene

(5) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SEPT7P2 Gene

Septin 7 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SEPT7P2 Gene

No ASD Table

Relevant External Links for SEPT7P2 Gene

GeneLoc Exon Structure for
SEPT7P2
ECgene alternative splicing isoforms for
SEPT7P2

Expression for SEPT7P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SEPT7P2 Gene

Protein differential expression in normal tissues from HIPED for SEPT7P2 Gene

This gene is overexpressed in Brain (47.4), Heart (11.2), and Lung (10.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SEPT7P2 Gene



Protein tissue co-expression partners for SEPT7P2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SEPT7P2 Gene:

SEPT7P2

SOURCE GeneReport for Unigene cluster for SEPT7P2 Gene:

Hs.723477
genes like me logo Genes that share expression patterns with SEPT7P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEPT7P2 Gene

Orthologs for SEPT7P2 Gene

Evolution for SEPT7P2 Gene

ENSEMBL:
Gene Tree for SEPT7P2 (if available)
TreeFam:
Gene Tree for SEPT7P2 (if available)

No data available for Orthologs for SEPT7P2 Gene

Paralogs for SEPT7P2 Gene

No data available for Paralogs for SEPT7P2 Gene

Variants for SEPT7P2 Gene

Sequence variations from dbSNP and Humsavar for SEPT7P2 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000025786 -- 45,723,299(-) T/G downstream_transcript_variant
rs1000138005 -- 45,756,874(-) C/G intron_variant
rs1000215490 -- 45,758,827(-) A/G intron_variant
rs1000220805 -- 45,737,146(-) AGCAAG/AG intron_variant
rs1000383736 -- 45,729,961(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SEPT7P2 Gene

Variant ID Type Subtype PubMed ID
dgv432e215 CNV deletion 23714750
esv2088604 CNV deletion 18987734
esv2734336 CNV deletion 23290073
esv3613030 CNV loss 21293372
esv3891103 CNV loss 25118596
nsv1015774 CNV loss 25217958
nsv966790 CNV duplication 23825009

Additional Variant Information for SEPT7P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPT7P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEPT7P2 Gene

Disorders for SEPT7P2 Gene

Additional Disease Information for SEPT7P2

No disorders were found for SEPT7P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPT7P2 Gene

Publications for SEPT7P2 Gene

  1. Expression profiling the human septin gene family. (PMID: 15915442) Hall PA … Russell SE (The Journal of pathology 2005) 2 3 58
  2. Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes? (PMID: 23314748) Nathan JA … Goldberg AL (The EMBO journal 2013) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 58

Products for SEPT7P2 Gene

Sources for SEPT7P2 Gene

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