 |
 | Services
| |
 |
Aliases & Descriptions for SEPT5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CDCREL 2, 5 | | CDCREL-1 2 | | CDCREL1 2 | | CDCrel-1 3 | | H5 1, 2 | | HCDCREL-1 1 | | PNUTL1 2, 3, 5 |
| | | Descriptions |
|---|
| Cell division control-related protein 1 3 | | Peanut-like protein 1 3 | | cell division control related protein 1 2 | | peanut-like 1 2 | | peanut-like 1 (Drosophila) 1 | | platelet glycoprotein Ib beta chain 2 | | septin 5 2 |
|
| | Search outside databases for aliases for SEPT5 gene |
Summaries for SEPT5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SEPT5: This gene is a member of the septin gene family of nucleotide binding proteins, originally described in yeast as cell division cycle regulatory proteins. Septins are highly conserved in yeast, Drosophila, and mouse and appear to regulate cytoskeletal organization. Disruption of septin function disturbs cytokinesis and results in large multinucleate or polyploid cells. This gene is mapped to 22q11, the region frequently deleted in DiGeorge and velocardiofacial syndromes. A translocation involving the MLL gene and this gene has also been reported in patients with acute myeloid leukemia. Two transcripts of this gene, a major one of 2.2 kb and a minor one of 3.5 kb, have been observed. The 2.2 kb form results from the utilization of a non-consensus polyA signal (AACAAT). In the absence of polyadenylation from this imperfect site, the consensus polyA signal of the downstream neighboring gene (GP1BB; platelet glycoprotein Ib) is used, resulting in the 3.5 kb transcript. An alternatively spliced transcript variant with a different 5' end has also been identified, but its full-length nature has not been completely determined. [provided by RefSeq] UniProtKB/Swiss-Prot: SEPT5_HUMAN, Q99719Function: Involved in cytokinesis (Potential)Gene Wiki entry for SEPT5 |
Genomic Location for SEPT5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SEPT5 gene 
Entrez Gene cytogenetic band: 22q11.21 Ensembl cytogenetic band: 22q11.21 HGNC cytogenetic band: 22q11.2SEPT5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure GeneLoc location for GC22P018077:
(about GC identifiers)
Start:
|
18,081,987 bp from pter |
End:
|
18,092,297 bp from pter |
Size:
|
10,311 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000022.9 NT_011519.10
| Proteins for SEPT5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SEPT5_HUMAN, Q99719 (See
protein sequence)Recommended Name: Septin-5 Size: 369 amino acids; 42777 Da
Subunit: May assemble into a multicomponent structure
Secondary accessions: O15251Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002679.2
ENSEMBL proteins: ENSP00000385356 ENSP00000372515 ENSP00000382384 ENSP00000328190 ENSP00000384535 ENSP00000327409
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: SEPT5 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SEPT5: Assays for SEPT5: | Protein
Domains/ Families for SEPT5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q99719
ProtoNet protein and cluster: Q99719 1 Blocks protein family: IPB000038 Cell division/GTP binding protein
UniProtKB/Swiss-Prot: SEPT5_HUMAN, Q99719Similarity: Belongs to the septin family | Gene Function for SEPT5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002688
Applied Biosystems Silencer® siRNAs for SEPT5
Sigma-Aldrich siRNA for SEPT5  Sigma-Aldrich shRNA for SEPT5  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002688                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002688                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002688 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002688
UniProtKB/Swiss-Prot: SEPT5_HUMAN, Q99719Function: Involved in cytokinesis (Potential)6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Sept5):
5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
): About this table | Pathways & Interactions for SEPT5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for SEPT5 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for SEPT5 
5/15 Interacting proteins for SEPT5 (ENSP000003281903 Q997191) via UniProtKB, MINT, and/or STRING (see all 15
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for SEPT5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SEPT5
|
Transcripts for SEPT5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002688
Sigma-Aldrich siRNA for SEPT5  Sigma-Aldrich shRNA for SEPT5  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002688 REFSEQ mRNAs for SEPT5 gene: NM_002688.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002688               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002688                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002688                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002688  Additional cDNA sequence: AF061154.1 AK056273.1 AK295940.1 BC020397.1 BC025261.1 BC030503.1 CR456545.1 CR597468.1 CR598470.1 CR601109.1 CR603626.1 CR605683.1 CR608884.1 CR608991.1 CR609437.1 CR610263.1 CR613594.1 CR619352.1 CR621875.1 J03259.1 U74628.1 U85431.1 Y11593.1 24/41 DOTS entries (see all 41
): DT.217803 DT.97810866 DT.100885289 DT.100885325 DT.100885296 DT.100885290 DT.100885312 DT.100885313 DT.100769098 DT.100885283 DT.100885291 DT.100885318 DT.100698231 DT.120643986 DT.91873438 DT.95183837 DT.95363722 DT.100664732 DT.100885282 DT.100885294 DT.100885305 DT.100885322 DT.120643994 DT.97797509 24/453 AceView cDNA sequences (see all 453
):BX428268 BM273082 AI089709 CR605683 T32101 CB153148 CA946742 BP349746 CR610263 AI951935 BM725251 BI792878 BX410920 NM_002688 CK903892 CA411614 AI250779 AI197816 H46034 U74628 BP346614 CB117978 F04630 CR609437
highest scoring ESTs for SEPT5:AA205074 AA291432 AA339336 AA351247 AA351377 AA351623 AA351737 AA393843 AA401627 AA428871 Unigene Cluster for SEPT5: Septin 5 Hs.283743 [show with all ESTs]Unigene Representative Sequence: NM_002688
GeneLoc Exon Structure
5/9 Alternative Splicing Database (ASD) splice patterns (SP) for SEPT5 (see all 9
)
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | · | 3c | · | 3d | ^ | 4a | · | 4b | · | 4c | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | ^ | 8a | · | 8b | ^ | 9 | ^ | 10a | · | 10b | ^ | 11a | · | 11b | · | 11c | ^ | 12 | ^ | 13a | · | 13b | · | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |
| SP4: | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 13c | ^ | 14a | · | 14b | |
| SP1: | |   | |   | |   | |
| SP2: | |   | |   | |   | |
| SP3: | |   | |   | |   | |
| SP4: | |   | |   | |   | |
| SP5: | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SEPT5
6 Ensembl transcripts including schematic representations: ENST00000406172
ENST00000383045
ENST00000399457
ENST00000330488
ENST00000406395
ENST00000332481
|
Expression for SEPT5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SEPT5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SEPT5
1 / 2 / 3 7 probe-sets matching SEPT5 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGGCACAATG
SOURCE GeneReport for Unigene cluster: Hs.283743
|
Orthologs for SEPT5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SEPT5 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for SEPT5
ENSEMBL Gene Tree for SEPT5 | Paralogs for SEPT5(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SEPT5 gene
- SEPT42 SEPT12
|
SNPs/Variants for SEPT5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SEPT5 (up to first 250kb)
|
Disorders & Mutations for SEPT5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602724
4 Novoseek disease relationships for SEPT5 gene
About this table
|
Medical News for SEPT5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SEPT5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/53 PubMed articles for SEPT5 gene (see all 53
):- Structure and expression of the human septin gene HCDCREL-1. (PubMed id 9611266)2, 3, 4 Yagi M....Ware J. (1998)
- A human gene similar to Drosophila melanogaster peanut maps to the DiGeorge syndrome region of 22q11. (PubMed id 9385360)2, 3, 4 McKie J.... Scambler P.J. (1997)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802)3, 4 Collins J.E.... Dunham I. (2004)
- Alternative expression of platelet glycoprotein Ib(beta) mRNA from an adjacent 5' gene with an imperfect polyadenylation signal sequence. (PubMed id 9022087)3, 4 Zieger B.... Ware J. (1997)
- Peanut-like 1 (septin 5) gene expression in normal and neoplastic human endocrine pancreas. (PubMed id 16179808)1, 3 Capurso G....Delle Fave G. (2005)
- Parkin functions as an E2-dependent ubiquitin-protein ligase and promotes the degradation of the synaptic vesicle-associated protein, CDCrel-1. (PubMed id 11078524)1, 3 Zhang Y.... Dawson T.M. (2000)
- The novel human platelet septin SEPT8 is an interaction partner of SEPT4. (PubMed id 15116257)1, 3 Blaser S....Zieger B. (2004)
- The septin CDCrel-1 binds syntaxin and inhibits exocytosis. (PubMed id 10321247)1, 3 Beites C.L....Trimble W.S. (1999)
- Septin expression in proliferative retinal membranes. (PubMed id 17625225)1, 3 Xin X....Meyer P. (2007)
|
Search for SEPT5
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SEPT5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SEPT5
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SEPT5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SEPT5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SEPT5:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for SEPT5 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
|