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SEPT3 Gene(Protein Coding)

Septin 3

GCID:
GC22P041976
GIFtS:
55
Genes Participants
UDN Logo

Aliases for SEPT3 Gene

Aliases for SEPT3 Gene

  • Septin 3 2 3 5
  • SEP3 3 4
  • Neuronal-Specific Septin 3 3
  • BK250D10.3 3

External Ids for SEPT3 Gene

Previous HGNC Symbols for SEPT3 Gene

  • SEP3

Previous GeneCards Identifiers for SEPT3 Gene

  • GC22P038987
  • GC22P040616
  • GC22P040697
  • GC22P042372
  • GC22P025339

Summaries for SEPT3 Gene

Entrez Gene Summary for SEPT3 Gene

  • This gene belongs to the septin family of GTPases. Members of this family are required for cytokinesis. Expression is upregulated by retinoic acid in a human teratocarcinoma cell line. The specific function of this gene has not been determined. Alternative splicing of this gene results in two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for SEPT3 Gene

SEPT3 (Septin 3) is a Protein Coding gene. Diseases associated with SEPT3 include Teratocarcinoma and Sexual Disorder. Among its related pathways are Bacterial invasion of epithelial cells. GO annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is SEPT6.

UniProtKB/Swiss-Prot for SEPT3 Gene

  • Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis (Potential).

Gene Wiki entry for SEPT3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEPT3 Gene

Genomics for SEPT3 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SEPT3 Gene

Enhancers for SEPT3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SEPT3 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the SEPT3 gene promoter:

Genomic Location for SEPT3 Gene

Chromosome:
22
Start:
41,976,272 bp from pter
End:
41,998,221 bp from pter
Size:
21,950 bases
Orientation:
Plus strand

Genomic View for SEPT3 Gene

Genes around SEPT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPT3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SEPT3 Gene

Proteins for SEPT3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for SEPT3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UH03-SEPT3_HUMAN
    Recommended name:
    Neuronal-specific septin-3
    Protein Accession:
    Q9UH03
    Secondary Accessions:
    • B1AHR0
    • Q2NKJ7
    • Q59GF7
    • Q6IBZ6
    • Q8N3P3
    • Q9HD35

    Protein attributes for SEPT3 Gene

    Size:
    358 amino acids
    Molecular mass:
    40704 Da
    Quaternary structure:
    • Septins polymerize into heterooligomeric protein complexes that form filaments, and can associate with cellular membranes, actin filaments and microtubules. GTPase activity is required for filament formation (By similarity).
    SequenceCaution:
    • Sequence=AAG00517.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAG00518.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAG00519.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI11780.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAD38797.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAG30458.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for SEPT3 Gene

    Alternative splice isoforms for SEPT3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SEPT3 Gene

Proteomics data for SEPT3 Gene at MOPED

Protein Expression for SEPT3 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for SEPT3 Gene

  • Phosphorylated by PKG on serine residues. Phosphorylated by PKG on Ser-91 (By similarity).
  • Ubiquitination at Lys 226
  • Modification sites at PhosphoSitePlus

Other Protein References for SEPT3 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for SEPT3 Gene

Domains & Families for SEPT3 Gene

Gene Families for SEPT3 Gene

HGNC:

Protein Domains for SEPT3 Gene

InterPro:
Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9UH03

UniProtKB/Swiss-Prot:

SEPT3_HUMAN :
  • Contains 1 septin-type G (guanine nucleotide-binding) domain.
  • Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
Domain:
  • Contains 1 septin-type G (guanine nucleotide-binding) domain.
Family:
  • Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
genes like me logo Genes that share domains with SEPT3: view

No data available for Suggested Antigen Peptide Sequences for SEPT3 Gene

Function for SEPT3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for SEPT3 Gene

UniProtKB/Swiss-Prot Function:
Filament-forming cytoskeletal GTPase (By similarity). May play a role in cytokinesis (Potential).
UniProtKB/Swiss-Prot Induction:
Up-regulated during neuronal differentiation.

Gene Ontology (GO) - Molecular Function for SEPT3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with SEPT3: view

Phenotypes for SEPT3 Gene

MGI mutant phenotypes for SEPT3:
inferred from 3 alleles
GenomeRNAi human phenotypes for SEPT3:
genes like me logo Genes that share phenotypes with SEPT3: view

Animal Models for SEPT3 Gene

MGI Knock Outs for SEPT3:

miRNA for SEPT3 Gene

miRTarBase miRNAs that target SEPT3

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SEPT3 Gene

Localization for SEPT3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SEPT3 Gene

Cytoplasm. Cytoplasm, cytoskeleton. Cell junction, synapse.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SEPT3 Gene COMPARTMENTS Subcellular localization image for SEPT3 gene
Compartment Confidence
cytoskeleton 4
cytosol 3
nucleus 3
plasma membrane 3

Gene Ontology (GO) - Cellular Components for SEPT3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005856 cytoskeleton IEA --
GO:0030054 cell junction IEA --
genes like me logo Genes that share ontologies with SEPT3: view

Pathways & Interactions for SEPT3 Gene

genes like me logo Genes that share pathways with SEPT3: view

Pathways by source for SEPT3 Gene

1 KEGG pathway for SEPT3 Gene

Gene Ontology (GO) - Biological Process for SEPT3 Gene

None

No data available for SIGNOR curated interactions for SEPT3 Gene

Drugs & Compounds for SEPT3 Gene

Products:

  1. Drug

(1) Drugs for SEPT3 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(1) Additional Compounds for SEPT3 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with SEPT3: view

Transcripts for SEPT3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for SEPT3 Gene

(3) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(214) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SEPT3 Gene

Septin 3:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SEPT3 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13
SP1: -
SP2: - -
SP3: - - - - - - -
SP4: - - - -
SP5: -
SP6:

Relevant External Links for SEPT3 Gene

GeneLoc Exon Structure for
SEPT3
ECgene alternative splicing isoforms for
SEPT3

Expression for SEPT3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for SEPT3 Gene

mRNA expression in normal human tissues for SEPT3 Gene
mRNA expression by GTEx for SEPT3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SEPT3 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x7.0), Brain - Frontal Cortex (BA9) (x6.2), Brain - Cortex (x5.8), Brain - Amygdala (x5.5), Brain - Hippocampus (x5.1), and Brain - Cerebellar Hemisphere (x4.2).

Protein differential expression in normal tissues from HIPED for SEPT3 Gene

This gene is overexpressed in Frontal cortex (29.1), Fetal Brain (21.8), and Brain (12.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SEPT3 Gene



SOURCE GeneReport for Unigene cluster for SEPT3 Gene Hs.120483

mRNA Expression by UniProt/SwissProt for SEPT3 Gene

Q9UH03-SEPT3_HUMAN
Tissue specificity: Brain-specific.
genes like me logo Genes that share expression patterns with SEPT3: view

Protein tissue co-expression partners for SEPT3 Gene

- Elite partner

Orthologs for SEPT3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SEPT3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia SEPT3 35
  • 94.4 (n)
  • 99.16 (a)
SEPT3 36
  • 99 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SEPT3 35
  • 95.07 (n)
  • 99.44 (a)
SEPT3 36
  • 98 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Sept3 35
  • 93.11 (n)
  • 99.69 (a)
Sept3 16
Sept3 36
  • 96 (a)
 OneToOne
chimpanzee
(Pan troglodytes)
 Mammalia SEPT3 35
  • 100 (n)
  • 100 (a)
SEPT3 36
  • 100 (a)
 OneToOne
rat
(Rattus norvegicus)
 Mammalia Sept3 35
  • 92.55 (n)
  • 98.32 (a)
platypus
(Ornithorhynchus anatinus)
 Mammalia SEPT3 36
  • 94 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves SEPT3 35
  • 84.99 (n)
  • 95.45 (a)
SEPT3 36
  • 91 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia SEPT3 36
  • 93 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia sept3 35
  • 80.22 (n)
  • 91.1 (a)
zebrafish
(Danio rerio)
 Actinopterygii sept3 35
  • 74.1 (n)
  • 87 (a)
sept3 36
  • 78 (a)
 OneToOne
baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes CDC3 36
  • 24 (a)
 OneToMany
sea squirt
(Ciona savignyi)
 Ascidiacea CSA.8439 36
  • 54 (a)
 OneToMany
Species with no ortholog for SEPT3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SEPT3 Gene

ENSEMBL:
Gene Tree for SEPT3 (if available)
TreeFam:
Gene Tree for SEPT3 (if available)

Paralogs for SEPT3 Gene

Paralogs for SEPT3 Gene

(16) SIMAP similar genes for SEPT3 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with SEPT3: view

Variants for SEPT3 Gene

Sequence variations from dbSNP and Humsavar for SEPT3 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs2269665 -- 41,981,874(+) GTGGC(A/G)GGCAG intron-variant
rs34310636 -- 41,979,161(+) CTGGT(-/A)CCTGT intron-variant
rs34376478 -- 41,980,079(+) ACCTG(-/A)AAAGG intron-variant
rs77350086 -- 41,982,185(+) GTGGT(C/G)TTATT intron-variant
rs77694682 -- 41,982,081(+) GGCAG(A/C)CCCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SEPT3 Gene

Variant ID Type Subtype PubMed ID
dgv4979n71 CNV Loss 21882294

Variation tolerance for SEPT3 Gene

Residual Variation Intolerance Score: 47.5% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SEPT3 Gene

Disorders for SEPT3 Gene

MalaCards: The human disease database

(3) MalaCards diseases for SEPT3 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
teratocarcinoma
  • mixed embryonal carcinoma and teratoma
sexual disorder
  • sexual dysfunction
nasopharyngeal disease
  • nasopharyngeal diseases
- elite association - COSMIC cancer census association via MalaCards
Search SEPT3 in MalaCards View complete list of genes associated with diseases

Relevant External Links for SEPT3

Human Genome Epidemiology (HuGE) Navigator
SEPT3
genes like me logo Genes that share disorders with SEPT3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SEPT3 Gene

Publications for SEPT3 Gene

  1. Human septin 3 on chromosome 22q13.2 is upregulated by neuronal differentiation. (PMID: 11322766) Methner A. … Lewerenz J. (Biochem. Biophys. Res. Commun. 2001) 3 4 23 67
  2. Phosphorylation of septin 3 on Ser-91 by cGMP-dependent protein kinase-I in nerve terminals. (PMID: 15107017) Xue J. … Robinson P.J. (Biochem. J. 2004) 3 23
  3. Septin 3 gene polymorphism in Alzheimer's disease. (PMID: 15200238) Takehashi M. … Ueda K. (Gene Expr. 2004) 3 23
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations. (PMID: 24528284) Ji Y. … Weinshilboum R.M. (Br J Clin Pharmacol 2014) 3

Products for SEPT3 Gene

Sources for SEPT3 Gene

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