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Aliases & Descriptions for SEPT2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DIFF6 2 , 3 , 5 KIAA0158 1 , 2 , 3 NEDD-5 3 NEDD5 2 , 3 , 5 OTTHUMP00000164575 2 Pnutl3 1 , 2 hNedd5 1 , 2
Descriptions Neural precursor cell expressed developmentally down-regulated protein 5 3 neural precursor cell expressed, developmentally down-regulated 5 1 , 2 septin 2 2
Search outside databases for aliases for SEPT2 gene
Summaries for SEPT2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
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UniProtKB/Swiss-Prot: SEPT2_HUMAN, Q15019 Function : Required for normal progress through mitosis. Involved in cytokinesis
Gene Wiki entry for SEPT2
Genomic Location for SEPT2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SEPT2 gene Entrez Gene cytogenetic band: 2q37 Ensembl cytogenetic band: 2q37.3 HGNC cytogenetic band: 2q37.3 SEPT2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P241975:
(about GC identifiers )
Start:
241,903,396 bp from pter
End:
241,942,115 bp from pter
Size:
38,720 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000002.10 NT_005416.12 Proteins for SEPT2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SEPT2_HUMAN, Q15019 (See
protein sequence )Recommended Name: Septin-2 Size : 361 amino acids; 41487 Da
Subunit : Monomer, and homodimer. Nucleotide binding promotes dimerization. Heterohexamer composedof two heterotrimers containing one copy each of SEPT2, SEPT6 and SEPT7. The asymmetricalheterotrimers associate head-to-head to form a hexameric unit that assembles into filaments
Subcellular location : Cytoplasm. Spindle. Note=Accumulates near the contractile ring from anaphasethrough telophase, and finally condenses into the midbody. In interphase and postmitotic cells,localised to fibrous or granular structures, depending on the growth state of the cell (Bysimilarity)
PDB structures from and Proteopedia : 2QA5 (3D)
 2QAG (3D)
 2QNR (3D)
 
Secondary accessions : Q14132 Q8IUK9 Q96CB0
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_001008491.1 NP_001008492.1 NP_004395.1 NP_006146.1 ENSEMBL proteins: ENSP00000353157 ENSP00000375834 ENSP00000375832 ENSP00000375833 ENSP00000385387 ENSP00000384861 ENSP00000385109 ENSP00000385172 ENSP00000384525 ENSP00000386001 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for SEPT2: Assays for SEPT2:
Protein
Domains/ Families for SEPT2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q15019 ProtoNet protein and cluster: Q15019
2 Blocks protein families : IPB000038 Cell division/GTP binding protein IPB008113 Septin 2 signature UniProtKB/Swiss-Prot: SEPT2_HUMAN, Q15019 Similarity : Belongs to the septin family
Gene Function for SEPT2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001008491 Applied Biosystems Silencer ® siRNAs for SEPT2 Sigma-Aldrich siRNA and siRNA Panels for SEPT2 Sigma-Aldrich shRNA for SEPT2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001008491                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001008491                                  untagged cDNA clones in CMV expression vector (see all 5 ): AK025163  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001008491 UniProtKB/Swiss-Prot: SEPT2_HUMAN, Q15019 Function : Required for normal progress through mitosis. Involved in cytokinesis
3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for SEPT2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for SEPT2 5/7 Interacting proteins for SEPT2 (ENSP00000353157 3 Q15019 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 7
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for SEPT2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Transcripts for SEPT2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001008491 Sigma-Aldrich siRNA and siRNA Panels for SEPT2 Sigma-Aldrich shRNA for SEPT2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001008491 NM_001008492 NM_004404 NM_006155
REFSEQ mRNAs for SEPT2 gene (4 alternative transcripts): NM_001008491.1 NM_001008492.1 NM_004404.3 NM_006155.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001008491 NM_001008492 NM_004404 NM_006155
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001008491                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001008491                                  untagged cDNA clones in CMV expression vector (see all 5 ): AK025163  
Additional cDNA sequence: AF038404.1 AK025163.1 AK294563.1 BC014455.1 BC033559.1 BC040676.1 BC043180.1 BX648000.1 CR589975.1 CR593579.1 CR608761.1 CR625560.1 D28540.1 D63878.1
24/85 DOTS entries (see all 85
): DT.100033375 DT.91773953 DT.100684920 DT.91915294 DT.91959159 DT.100684911 DT.87012262 DT.91773966 DT.91773947 DT.100684906 DT.120964381 DT.92413358 DT.100684922 DT.100684905 DT.100684915 DT.87017681 DT.75172050 DT.120964489 DT.100684916 DT.100847908 DT.91773961 DT.95272772 DT.100684914 DT.91727308
24/1255 AceView cDNA sequences (see all 1255
):BM475821 AI752921 CF995789 BM723567 BM988455 N67234 AW469297 AU122543 AI074412 BQ000901 AW517043 AI383938 CD657011 AI468179 AI540722 AA150689 BE348968 AU130880 AI864579 AU139822 AI720309 AI580723 BE044063 T36137
highest scoring ESTs for SEPT2 :D63878 AA011596 AA027297 AA027298 AA029716 AA034310 AA034311 AA053534 AA071158 AA127717
Unigene Cluster for SEPT2: Septin 2 Hs.716403 [show with all ESTs ] Unigene Representative Sequence: NM_001008491 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for SEPT2 (see all 11
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c · 8d · 8e ^ 9a · 9b · 9c ^ 10a · 10b · 10c ^ 11a · 11b ^ 12a · 12b · 12c ^ 13a · SP1 :                 -   -   -       -                           SP2 :                                               -   -   -   SP3 :         -   -   -     -   -   -       -                           SP4 :                 -   -   -       -                           SP5 :   -   -   -   -   -       -   -         -                          
ExUns: 13b ^ 14 ^ 15 ^ 16a · 16b SP1 :           SP2 :           SP3 :           SP4 :           SP5 :          
About this scheme ECgene alternative splicing isoforms for SEPT2 10 Ensembl transcripts including schematic representations : ENST00000360051
ENST00000391973
ENST00000391971
ENST00000391972
ENST00000402251
ENST00000406494
ENST00000401990
ENST00000402092
ENST00000407971
ENST00000407017
Expression for SEPT2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SEPT2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SEPT2 1 / 2 / 3
12 probe-sets matching SEPT2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CGGAGTCCATSOURCE GeneReport for Unigene cluster: Hs.716403
Orthologs for SEPT2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SEPT2 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for SEPT2 ENSEMBL Gene Tree for SEPT2 Paralogs for SEPT2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SEPT2 gene ENSG00000214765 2 ENSG00000120555 2 LOC441601 2 SEPT7 2
SNPs/Variants for SEPT2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SEPT2 (up to first 250kb)
Disorders & Mutations for SEPT2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601506 Human Genome Epidemiology Navigator: SEPT2 (1 document)
Medical News for SEPT2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SEPT2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/50 PubMed articles for SEPT2 gene (see all 50
): Isolation and mapping of a human gene (DIFF6) homologous to yeast CDC3, CDC10, CDC11, and CDC12, and mouse Diff6. (PubMed id 8697812) 2, 3, 4 Mori T.... Nakamura Y. (1996) Septin 2 phosphorylation: theoretical and mass spectrometric evidence for the existence of a single phosphorylation site in vivo. (PubMed id 15150837) 1, 3, 4 She Y.M.... Trimble W.S. (2004) Structural insight into filament formation by mammalian septins. (PubMed id 17637674) 3, 4 Sirajuddin M....Wittinghofer A. (2007) Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220) 3, 4 Nousiainen M.... Koerner R. (2006) Phosphoproteomic analysis of the human pituitary. (PubMed id 16807684) 3, 4 Beranova-Giorgianni S.... Giorgianni F. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455) 3, 4 Rush J.... Comb M.J. (2005) A mitotic septin scaffold required for Mammalian chromosome congression and segregation. (PubMed id 15774761) 3, 4 Spiliotis E.T....Nelson W.J. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 8590280) 3, 4 Nagase T....Nomura N. (1995)
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Genome Databases showing SEPT2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SEPT2
(According to HUGE )
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Specialized Databases showing SEPT2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for SEPT2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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