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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SEPT10 Gene

protein-coding   GIFtS: 47
GCID: GC02M110300

septin 10

  Search for SEPT10
in our new
 Human Malady Compendium 
Biological research products
for SEPT10
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Septin 101 2
FLJ116191
Septin-101

External Ids:    HGNC: 143491   Entrez Gene: 1510112   Ensembl: ENSG000001865227   OMIM: 6117375   UniProtKB: Q9P0V93   

Export aliases for SEPT10 gene to outside databases

Previous GC identifers: GC02M109850 GC02M109912 GC02M109657 GC02M103756


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for SEPT10:
This gene encodes a member of the septin family of cytoskeletal proteins with GTPase activity. This protein localizes
to the cytoplasm and nucleus and displays GTP-binding and GTPase activity. A pseudogene for this gene is located on
chromosome 8. Alternative splicing results in multiple transcript variants. (provided by RefSeq, Apr 2012)

UniProtKB/Swiss-Prot: SEP10_HUMAN, Q9P0V9
Function: Filament-forming cytoskeletal GTPase. May play a role in cytokinesis (Potential)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.1  NT_022135.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SEPT10 gene promoter:
         LHX3b/Lhx3b   Lmo2   MyoD   IRF-1   Nkx2-5   C/EBPalpha   IRF-7A   LHX3a/Lhx3a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for SEPT10

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SEPT10


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q13   Ensembl cytogenetic band:  2q13   HGNC cytogenetic band: 2q13

SEPT10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SEPT10 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M110300:  view genomic region     (about GC identifiers)

Start:
110,300,376 bp from pter      End:
110,371,783 bp from pter
Size:
71,408 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SEP10_HUMAN, Q9P0V9 (See protein sequence)
Recommended Name: Septin-10  
Size: 454 amino acids; 52593 Da
Subunit: Septins polymerize into heterooligomeric protein complexes that form filaments, and can associate with
cellular membranes, actin filaments and microtubules. GTPase activity is required for filament formation (By
similarity)
Subcellular location: Cytoplasm. Cytoplasm, cytoskeleton (By similarity). Note=Using a GFP-fusion protein, detected in
the nucleus (PubMed:12711328)
Sequence caution: Sequence=AAF67469.1; Type=Frameshift; Positions=444;
Secondary accessions: B3KRQ9 Q86VP5 Q9HAH6
Alternative splicing: 3 isoforms:  Q9P0V9-1   Q9P0V9-2   Q9P0V9-3   (Ref.2 (AAH50345) sequence differs from that shown due to a frameshift in position 503)

Explore the universe of human proteins at neXtProt for SEPT10: NX_Q9P0V9

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9P0V9

  • SEPT10 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_653311.1  NP_848699.1  

    ENSEMBL proteins: 
     ENSP00000349116   ENSP00000380824   ENSP00000380826   ENSP00000407790   ENSP00000396728  
     ENSP00000446331   ENSP00000399270   ENSP00000445707   ENSP00000416597   ENSP00000441218  
     ENSP00000396051   ENSP00000408392   ENSP00000334234   ENSP00000439364  

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    Browse Proteins at Uscn

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0031105septin complex IEA--


    SEPT10 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    SEPT10 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR000038 Cell_div_GTP-bd
     IPR016491 Septin

    Graphical View of Domain Structure for InterPro Entry Q9P0V9

    ProtoNet protein and cluster: Q9P0V9

    1 Blocks protein family: IPB000038 Cell division/GTP binding protein

    UniProtKB/Swiss-Prot: SEP10_HUMAN, Q9P0V9
    Similarity: Belongs to the septin family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: SEP10_HUMAN, Q9P0V9
    Function: Filament-forming cytoskeletal GTPase. May play a role in cytokinesis (Potential)

    miRNA
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    8/28 QIAGEN miScript miRNA Assays for microRNAs that regulate SEPT10 (see all 28):
    hsa-miR-3910 hsa-miR-875-3p hsa-miR-4328 hsa-miR-4251 hsa-miR-1297 hsa-miR-223 hsa-miR-374c hsa-miR-124
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005525GTP binding IEA--


    SEPT10 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for SEPT10:
     Decreased cilium length after  


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SEPT10

    STRING Interaction Network Preview (showing 5 interactants - click image to see 14)

    5/18 Interacting proteins for SEPT10 (Q9P0V92, 3 ENSP000003808244) via UniProtKB, MINT, STRING, and/or I2D (see all 18)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SEPT2Q150193, ENSP000003531574I2D: score=5 STRING: ENSP00000353157
    SEPT7Q161813, ENSP000003819924I2D: score=2 STRING: ENSP00000381992
    SEPT4O432363I2D: score=1 
    SYVN1Q86TM63I2D: score=1 
    ZBTB16Q055163I2D: score=1 
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007049cell cycle IEA--
    GO:0051301cell division IEA--


    SEPT10 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for SEPT10

    1 HMDB Compound for SEPT10    About this table
    CompoundSynonyms CAS #PubMed Ids
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--
    Search CenterWatch for drugs/clinical trials and news about SEPT10 / SEP10 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SEPT10 gene (2 alternative transcripts): 
    NM_144710.3  NM_178584.2  

    Unigene Cluster for SEPT10:

    Septin 10
    Hs.469615  [show with all ESTs]
    Unigene Representative Sequence: AB208875
    16 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000356688(uc002tev.1 uc010ywu.1 uc002tey.3) ENST00000397712(uc010fjo.3 uc002tew.3 uc002tex.3 uc010ywv.2)
    ENST00000397714 ENST00000437928 ENST00000415095 ENST00000468616 ENST00000483047(uc002tez.1)
    ENST00000486678 ENST00000425498 ENST00000493445 ENST00000423520 ENST00000461295
    ENST00000411469 ENST00000442746 ENST00000334001 ENST00000545389

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    8/28 QIAGEN miScript miRNA Assays for microRNAs that regulate SEPT10 (see all 28):
    hsa-miR-3910 hsa-miR-875-3p hsa-miR-4328 hsa-miR-4251 hsa-miR-1297 hsa-miR-223 hsa-miR-374c hsa-miR-124
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    Additional cDNA sequence: 

    AB208875.1 AF146760.1 AF316880.1 AK021681.1 AK022682.1 AK092033.1 AK125706.1 AK292038.1 
    AK294427.1 AK295560.1 AL049934.1 AL353938.1 BC020502.1 BC050345.1 NR_047585.1 

    11 DOTS entries:

    DT.80100472  DT.92030851  DT.95108491  DT.92458088  DT.99981848  DT.100737584  DT.121002173  DT.92458093 
    DT.121473586  DT.92458073  DT.121002171 

    24/220 AceView cDNA sequences (see all 220):

    BM474486 AW074503 BE889899 BQ574423 BF437363 AW514882 BX494629 AV651619 
    AI928261 AF316880 AW452298 CD679502 BQ440879 BM467784 BI757810 AA514883 
    BM463739 AI342192 BM474125 AF146760 BM452966 BQ894369 AW472997 AA778483 

    GeneLoc Exon Structure

    5/13 Alternative Splicing Database (ASD) splice patterns (SP) for SEPT10 (see all 13)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b · 10c ^ 11a · 11b ^ 12a · 12b
    SP1:                    -                                                                                                                           
    SP2:                                                                                                                                                
    SP3:                                -     -     -     -     -                                                                                       
    SP4:                                                                                                                                                
    SP5:                                                                                                                                                


    ECgene alternative splicing isoforms for SEPT10

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SEPT10 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AGTGTATCAC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See SEPT10 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SEPT10

    SOURCE GeneReport for Unigene cluster: Hs.469615

    UniProtKB/Swiss-Prot: SEP10_HUMAN, Q9P0V9
    Tissue specificity: Widely expressed. Abundantly expressed in heart and kidney, placenta, skeletal muscles, liver and
    lung, as well as various tumor cell lines

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for SEPT10 gene from 6/23 species (see all 23)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves SEPT101 septin 10 75.51(n)
    74.88(a)
      418732  XM_416931.3  XP_416931.2 
    lizard
    (Anolis carolinensis)
    Reptilia SEPT106
    --
    74(a)
    1 → many
    3(106900653-106922075)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.76042 Xenopus laevis transcribed sequence with moderate similarity more 77.03(n)    CA985775.1 
    zebrafish
    (Danio rerio)
    Actinopterygii sept101 septin 10 72.33(n)
    79.67(a)
      550129  NM_001017557.1  NP_001017557.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Sep26
    Sep56
    Sep5
    67(a)
    60(a)
    many ↔ many
    many ↔ many
    3R(16411851-16414085)
    2R(3847638-3849427)
    worm
    (Caenorhabditis elegans)
    Secernentea unc-616
    unc-596
    UNCoordinated family member (unc-59)
    35(a)
    26(a)
    1 ↔ many
    possible ortholog
    V(14731080-14734222)
    I(13629214-13633485)


    ENSEMBL Gene Tree for SEPT10 (if available)
    TreeFam Gene Tree for SEPT10 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SEPT10 gene
    SEPT32  SEPT92  SEPT142  SEPT42  SEPT12  SEPT72  SEPT122  SEPT62  
    SEPT7L2  SEPT112  SEPT22  SEPT82  SEPT52  
    18/19 SIMAP similar genes for SEPT10 using alignment to 13 protein entries:     SEP10_HUMAN (see all proteins) (see all similar genes):
    DKFZp564M1416    DKFZp547B243    SEPT11    SEPT6    SEPT8    SEPT14
    MAFK    SEPT9    SEPT7L    SEPT3    SEPT2    SEPT7
    SEPT5    DKFZp686F17268    Nbla02942    SEPT4    SEPT1    SEPT12

    SEPT10 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for SEPT10
    PGOHUM00000249350


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1066 NCBI SNPs in SEPT10 are shown (see all 1066    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1460656711,2
    --110299881(+) CATTGC/TGGCTG 3 -- ds50010--------
    rs1124809711,2
    C,--110299898(+) GAGTGG/AGGCTT 3 -- ds50011Minor allele frequency- A:0.50NA 2
    rs613544801,2
    C,--110299902(+) GAGGCT/CTTCTC 3 -- ds50014Minor allele frequency- C:0.11WA NA EA 360
    rs1143429971,2
    F,--110299914(+) CAGCAG/ATCATC 3 -- ds50011Minor allele frequency- A:0.04WA 118
    rs1120937501,2
    C,--110299925(+) AGCAGT/GACAAA 3 -- ds50012Minor allele frequency- G:0.05CSA WA 120
    rs1931186691,2
    --110299935(+) AACGAC/TCGCCC 3 -- ds50010--------
    rs1847663671,2
    --110299979(+) ATTACA/GTTCTT 3 -- ds50010--------
    rs791980341,2
    C,F,--110300018(+) CCATTC/ACAACA 3 -- ds50011Minor allele frequency- A:0.12EA 120
    rs1891019211,2
    --110300120(+) ACTCCC/TGCAGT 3 -- ds50010--------
    rs1814410021,2
    --110300173(+) AGTACC/TGTGAT 3 -- ds50010--------

    HapMap Linkage Disequilibrium report for SEPT10 (110300376 - 110371783 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for SEPT10: --

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    SEPT10 for disorders           About MalaCards

    SEPT10 for disorders           About GeneDecksing

    OMIM gene information: 611737    OMIM disorders: --


    Export disorders for SEPT10 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SEPT10 gene, integrated from 9 sources (see all 16):
    (articles sorted by number of sources associating them with SEPT10)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning and functional characterization of human septin 10, a novel member of septin family cloned from dendritic cells. (PubMed id 12711328)1, 2, 3, 9 Sui L.... Cao X. (2003)
    2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W....Wilson R.K. (2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    5. Are surrogates of IGHV gene mutational status useful in B-cell chronic lymphocytic leukemia? The example of Septin-10. (PubMed id 17657217)1, 9 Benedetti D....Gattei V. (2008)
    6. Identification of a novel role of Septin 10 in paclita xel-resistance in cancers through a functional genomics screen. (PubMed id 22320903)1 Xu M....Kuroda M. (2012)
    7. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    8. A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (2012)
    9. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 151011 HGNC: 14349 AceView: SEPT10 Ensembl:ENSG00000186522 euGenes: HUgn151011
    ECgene: SEPT10 H-InvDB: SEPT10

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SEPT10 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SEPT10 gene:
    Search GeneIP for patents involving SEPT10

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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