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Aliases for SEPSECS-AS1 Gene

Subcategory (RNA class) for SEPSECS-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SEPSECS-AS1 Gene

  • SEPSECS Antisense RNA 1 (Head To Head) 2 3

External Ids for SEPSECS-AS1 Gene

Previous GeneCards Identifiers for SEPSECS-AS1 Gene

  • GC04P025164
  • GC04P025161

Summaries for SEPSECS-AS1 Gene

GeneCards Summary for SEPSECS-AS1 Gene

SEPSECS-AS1 (SEPSECS Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SEPSECS-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEPSECS-AS1 Gene

Genomics for SEPSECS-AS1 Gene

Regulatory Elements for SEPSECS-AS1 Gene

Enhancers for SEPSECS-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H025171 1.1 Ensembl ENCODE 0.4 +12.8 12783 3 GTF2F1 CTCF ATF1 JUN ZMYM3 BATF FOSL1 HIC1 ZNF366 POLR2A ANAPC4 ZCCHC4 PI4K2B SEPSECS-AS1 PIR43049
GH04H025178 0.9 ENCODE 0.4 +18.2 18174 1 ELF3 FOXA2 MLX DMAP1 DNMT3B ZSCAN9 RAD21 RARA YY1 CREM ANAPC4 PI4K2B SEPSECS-AS1 PIR43049
GH04H025180 0.6 ENCODE 0.3 +20.0 20032 0 CTCF ZNF654 MAZ SMC3 ZNF143 HNF4A RAD21 SEPSECS-AS1 PIR43049
GH04H025213 0.7 ENCODE 0.2 +53.3 53253 1 PKNOX1 MAX REST ATF2 RAD21 YY1 JUND ZNF316 ATF3 HNF4G ANAPC4 PIR43049 SEPSECS-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SEPSECS-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SEPSECS-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000166874 -72 2401 HDGF FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143

Genomic Location for SEPSECS-AS1 Gene

Chromosome:
4
Start:
25,160,672 bp from pter
End:
25,198,506 bp from pter
Size:
37,835 bases
Orientation:
Plus strand

Genomic View for SEPSECS-AS1 Gene

Genes around SEPSECS-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPSECS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPSECS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEPSECS-AS1 Gene

Proteins for SEPSECS-AS1 Gene

Post-translational modifications for SEPSECS-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPSECS-AS1 Gene

Domains & Families for SEPSECS-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEPSECS-AS1 Gene

Function for SEPSECS-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPSECS-AS1 Gene

Localization for SEPSECS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEPSECS-AS1 Gene

Pathways & Interactions for SEPSECS-AS1 Gene

SuperPathways for SEPSECS-AS1 Gene

No Data Available

Interacting Proteins for SEPSECS-AS1 Gene

Gene Ontology (GO) - Biological Process for SEPSECS-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEPSECS-AS1 Gene

Drugs & Compounds for SEPSECS-AS1 Gene

No Compound Related Data Available

Transcripts for SEPSECS-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SEPSECS-AS1 Gene

No ASD Table

Relevant External Links for SEPSECS-AS1 Gene

GeneLoc Exon Structure for
SEPSECS-AS1
ECgene alternative splicing isoforms for
SEPSECS-AS1

No data available for mRNA/cDNA for SEPSECS-AS1 Gene

Expression for SEPSECS-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEPSECS-AS1 Gene

Orthologs for SEPSECS-AS1 Gene

No data available for Orthologs and Evolution for SEPSECS-AS1 Gene

Paralogs for SEPSECS-AS1 Gene

No data available for Paralogs for SEPSECS-AS1 Gene

Variants for SEPSECS-AS1 Gene

Sequence variations from dbSNP and Humsavar for SEPSECS-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs111926440 Uncertain significance 25,160,529(+) CGTTC(A/G/T)TGCAC upstream-variant-2KB, utr-variant-5-prime
rs536637971 Uncertain significance 25,160,508(+) AAAAC(-/A/AA)AAAAA upstream-variant-2KB, utr-variant-5-prime
rs748765764 Uncertain significance 25,158,941(+) TACTT(-/AAAA)AAAGA intron-variant, upstream-variant-2KB
rs886059354 Uncertain significance 25,160,484(-) GTTTT(-/GTTTT)TTGTC upstream-variant-2KB, utr-variant-5-prime
rs34423002 Benign 25,159,110(+) CCCTT(-/A/AA/AAA/AAAA)AAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SEPSECS-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv4277 CNV deletion 18451855

Relevant External Links for SEPSECS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPSECS-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEPSECS-AS1 Gene

Disorders for SEPSECS-AS1 Gene

Relevant External Links for SEPSECS-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SEPSECS-AS1

No disorders were found for SEPSECS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPSECS-AS1 Gene

Publications for SEPSECS-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for SEPSECS-AS1 Gene

Sources for SEPSECS-AS1 Gene

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