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Aliases for SEPSECS-AS1 Gene

Subcategory (RNA class) for SEPSECS-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SEPSECS-AS1 Gene

  • SEPSECS Antisense RNA 1 (Head To Head) 2 3

External Ids for SEPSECS-AS1 Gene

Previous GeneCards Identifiers for SEPSECS-AS1 Gene

  • GC04P025164
  • GC04P025161

Summaries for SEPSECS-AS1 Gene

GeneCards Summary for SEPSECS-AS1 Gene

SEPSECS-AS1 (SEPSECS Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SEPSECS-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEPSECS-AS1 Gene

Genomics for SEPSECS-AS1 Gene

GeneHancer (GH) Regulatory Elements for SEPSECS-AS1 Gene

Promoters and enhancers for SEPSECS-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I025158 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.1 -82 3.8 HDGF SMAD1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ENSG00000281028 SEPSECS SEPSECS-AS1 ANAPC4 PI4K2B DHX15 PIR60918
GH04I025171 Enhancer 1 Ensembl ENCODE 0.4 +12.8 12813 3.1 ATF1 BATF IRF4 ZNF366 FOS CEBPB ZEB2 SP1 PRDM6 MTA1 ANAPC4 ZCCHC4 PI4K2B ENSG00000281028 SEPSECS-AS1 PIR43049
GH04I025178 Enhancer 0.8 ENCODE 0.4 +18.2 18204 1.2 ELF3 FOXA2 MLX DMAP1 DNMT3B ZSCAN9 RAD21 RARA YY1 CREM ANAPC4 PI4K2B ENSG00000281028 SEPSECS-AS1 PIR43049
GH04I025180 Enhancer 0.6 ENCODE 0.3 +20.1 20063 0.1 CTCF ZNF654 RXRA RAD21 ZNF148 CTBP1 SMC3 ZNF143 HNF4A ZNF444 SEPSECS-AS1 ENSG00000281028 PIR43049
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SEPSECS-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SEPSECS-AS1 Gene

Genomic Locations for SEPSECS-AS1 Gene
chr4:25,160,641-25,201,440
(GRCh38/hg38)
Size:
40,800 bases
Orientation:
Plus strand
chr4:25,162,294-25,200,128
(GRCh37/hg19)

Genomic View for SEPSECS-AS1 Gene

Genes around SEPSECS-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPSECS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPSECS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEPSECS-AS1 Gene

Proteins for SEPSECS-AS1 Gene

Post-translational modifications for SEPSECS-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPSECS-AS1 Gene

Domains & Families for SEPSECS-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEPSECS-AS1 Gene

Function for SEPSECS-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPSECS-AS1 Gene

Localization for SEPSECS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEPSECS-AS1 Gene

Pathways & Interactions for SEPSECS-AS1 Gene

SuperPathways for SEPSECS-AS1 Gene

No Data Available

Interacting Proteins for SEPSECS-AS1 Gene

Gene Ontology (GO) - Biological Process for SEPSECS-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEPSECS-AS1 Gene

Drugs & Compounds for SEPSECS-AS1 Gene

No Compound Related Data Available

Transcripts for SEPSECS-AS1 Gene

mRNA/cDNA for SEPSECS-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SEPSECS-AS1 Gene

No ASD Table

Relevant External Links for SEPSECS-AS1 Gene

GeneLoc Exon Structure for
SEPSECS-AS1
ECgene alternative splicing isoforms for
SEPSECS-AS1

Expression for SEPSECS-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEPSECS-AS1 Gene

Orthologs for SEPSECS-AS1 Gene

Evolution for SEPSECS-AS1 Gene

ENSEMBL:
Gene Tree for SEPSECS-AS1 (if available)
TreeFam:
Gene Tree for SEPSECS-AS1 (if available)

No data available for Orthologs for SEPSECS-AS1 Gene

Paralogs for SEPSECS-AS1 Gene

No data available for Paralogs for SEPSECS-AS1 Gene

Variants for SEPSECS-AS1 Gene

Sequence variations from dbSNP and Humsavar for SEPSECS-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs111926440 uncertain-significance, Pontoneocerebellar hypoplasia 25,160,529(+) G/A/T upstream_transcript_variant
rs536637971 likely-benign, uncertain-significance, Pontoneocerebellar hypoplasia 25,160,509(+) AAAAAAAA/AAAAAAAAA/AAAAAAAAAA upstream_transcript_variant
rs748765764 uncertain-significance, Pontoneocerebellar hypoplasia 25,158,941(+) AAAAAAA/AAA/AAAAAAAA upstream_transcript_variant
rs779134137 uncertain-significance, Pontoneocerebellar hypoplasia 25,160,484(+) AAAACAAAACAAAACAAAACAAAACAAAA/AAAACAAAACAAAACAAAACAAAA/AAAACAAAACAAAACAAAACAAAACAAAACAAAA/AAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAA upstream_transcript_variant
rs34423002 benign, not specified 25,159,111(+) AAAAAAAAAAAAAAA/AAAAAAAAAAAAA/AAAAAAAAAAAAAA/AAAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAAAAA upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SEPSECS-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv4277 CNV deletion 18451855

Additional Variant Information for SEPSECS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPSECS-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEPSECS-AS1 Gene

Disorders for SEPSECS-AS1 Gene

Additional Disease Information for SEPSECS-AS1

No disorders were found for SEPSECS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPSECS-AS1 Gene

Publications for SEPSECS-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SEPSECS-AS1 Gene

Sources for SEPSECS-AS1 Gene

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