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Aliases for SEPSECS-AS1 Gene

Subcategory (RNA class) for SEPSECS-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SEPSECS-AS1 Gene

  • SEPSECS Antisense RNA 1 (Head To Head) 2 3 5

External Ids for SEPSECS-AS1 Gene

Previous GeneCards Identifiers for SEPSECS-AS1 Gene

  • GC04P025164

Summaries for SEPSECS-AS1 Gene

GeneCards Summary for SEPSECS-AS1 Gene

SEPSECS-AS1 (SEPSECS Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEPSECS-AS1 Gene

Genomics for SEPSECS-AS1 Gene

Regulatory Elements for SEPSECS-AS1 Gene


Promoters for SEPSECS-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001238284 59 3001 HDGF CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207

Genomic Location for SEPSECS-AS1 Gene

Chromosome:
4
Start:
25,160,641 bp from pter
End:
25,201,440 bp from pter
Size:
40,800 bases
Orientation:
Plus strand

Genomic View for SEPSECS-AS1 Gene

Genes around SEPSECS-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPSECS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPSECS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEPSECS-AS1 Gene

Proteins for SEPSECS-AS1 Gene

Post-translational modifications for SEPSECS-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPSECS-AS1 Gene

Domains & Families for SEPSECS-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEPSECS-AS1 Gene

Function for SEPSECS-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPSECS-AS1 Gene

Localization for SEPSECS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SEPSECS-AS1 Gene

Pathways & Interactions for SEPSECS-AS1 Gene

SuperPathways for SEPSECS-AS1 Gene

No Data Available

Interacting Proteins for SEPSECS-AS1 Gene

Gene Ontology (GO) - Biological Process for SEPSECS-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEPSECS-AS1 Gene

Transcripts for SEPSECS-AS1 Gene

mRNA/cDNA for SEPSECS-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SEPSECS-AS1 Gene

No ASD Table

Relevant External Links for SEPSECS-AS1 Gene

GeneLoc Exon Structure for
SEPSECS-AS1
ECgene alternative splicing isoforms for
SEPSECS-AS1

Expression for SEPSECS-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SEPSECS-AS1 Gene

Orthologs for SEPSECS-AS1 Gene

Evolution for SEPSECS-AS1 Gene

ENSEMBL:
Gene Tree for SEPSECS-AS1 (if available)
TreeFam:
Gene Tree for SEPSECS-AS1 (if available)

No data available for Orthologs for SEPSECS-AS1 Gene

Paralogs for SEPSECS-AS1 Gene

No data available for Paralogs for SEPSECS-AS1 Gene

Variants for SEPSECS-AS1 Gene

Sequence variations from dbSNP and Humsavar for SEPSECS-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs34423002 Benign 25,159,110(+) CCCTT(-/A/AA/AAA/AAAA)AAAAA intron-variant, upstream-variant-2KB
rs10002183 -- 25,177,507(+) CAACA(C/T)GTTTG intron-variant
rs10006028 -- 25,196,064(+) AAAGC(A/G)TGAAT intron-variant
rs10011735 -- 25,171,308(+) TCTCT(G/T)AAGAG intron-variant
rs10014373 -- 25,177,663(+) ttctg(C/T)agctc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SEPSECS-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv4277 CNV deletion 18451855

Relevant External Links for SEPSECS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPSECS-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEPSECS-AS1 Gene

Disorders for SEPSECS-AS1 Gene

Relevant External Links for SEPSECS-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SEPSECS-AS1

No disorders were found for SEPSECS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPSECS-AS1 Gene

Publications for SEPSECS-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SEPSECS-AS1 Gene

Sources for SEPSECS-AS1 Gene

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