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Aliases for SENP3-EIF4A1 Gene

Subcategory (RNA class) for SENP3-EIF4A1 Gene


Quality Score for this RNA gene is


Aliases for SENP3-EIF4A1 Gene

  • SENP3-EIF4A1 Readthrough (NMD Candidate) 2 3 5

External Ids for SENP3-EIF4A1 Gene

Previous GeneCards Identifiers for SENP3-EIF4A1 Gene

  • GC17U901629
  • GC17P007469
  • GC17P007568
  • GC17P007570

Summaries for SENP3-EIF4A1 Gene

Entrez Gene Summary for SENP3-EIF4A1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring SUMO1/sentrin/SMT3 specific peptidase 3 (SENP3) and eukaryotic translation initiation factor 4A1 (EIF4A1) genes on chromosome 17. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for SENP3-EIF4A1 Gene

SENP3-EIF4A1 (SENP3-EIF4A1 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. GO annotations related to this gene include cysteine-type peptidase activity. An important paralog of this gene is SENP3.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SENP3-EIF4A1 Gene

Genomics for SENP3-EIF4A1 Gene

Genomic Location for SENP3-EIF4A1 Gene

7,561,992 bp from pter
7,579,006 bp from pter
17,015 bases
Plus strand

Genomic View for SENP3-EIF4A1 Gene

Genes around SENP3-EIF4A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SENP3-EIF4A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SENP3-EIF4A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SENP3-EIF4A1 Gene

No data available for Regulatory Elements for SENP3-EIF4A1 Gene

Proteins for SENP3-EIF4A1 Gene

  • Protein details for SENP3-EIF4A1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Protein SENP3-EIF4A1
    Protein Accession:

    Protein attributes for SENP3-EIF4A1 Gene

    540 amino acids
    Molecular mass:
    61278 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SENP3-EIF4A1 Gene

Post-translational modifications for SENP3-EIF4A1 Gene

No Post-translational modifications

Other Protein References for SENP3-EIF4A1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for SENP3-EIF4A1 Gene

Domains & Families for SENP3-EIF4A1 Gene

Protein Domains for SENP3-EIF4A1 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SENP3-EIF4A1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SENP3-EIF4A1 Gene

Function for SENP3-EIF4A1 Gene

Gene Ontology (GO) - Molecular Function for SENP3-EIF4A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008234 cysteine-type peptidase activity IEA --
genes like me logo Genes that share ontologies with SENP3-EIF4A1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SENP3-EIF4A1 Gene

Localization for SENP3-EIF4A1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SENP3-EIF4A1 Gene

Pathways & Interactions for SENP3-EIF4A1 Gene

SuperPathways for SENP3-EIF4A1 Gene

No Data Available

Interacting Proteins for SENP3-EIF4A1 Gene

Gene Ontology (GO) - Biological Process for SENP3-EIF4A1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SENP3-EIF4A1 Gene

Transcripts for SENP3-EIF4A1 Gene

mRNA/cDNA for SENP3-EIF4A1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SENP3-EIF4A1 Gene

No ASD Table

Relevant External Links for SENP3-EIF4A1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SENP3-EIF4A1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SENP3-EIF4A1 Gene

genes like me logo Genes that share expression patterns with SENP3-EIF4A1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SENP3-EIF4A1 Gene

Orthologs for SENP3-EIF4A1 Gene

Evolution for SENP3-EIF4A1 Gene

Gene Tree for SENP3-EIF4A1 (if available)
Gene Tree for SENP3-EIF4A1 (if available)

No data available for Orthologs for SENP3-EIF4A1 Gene

Paralogs for SENP3-EIF4A1 Gene

Paralogs for SENP3-EIF4A1 Gene

genes like me logo Genes that share paralogs with SENP3-EIF4A1: view

Variants for SENP3-EIF4A1 Gene

Sequence variations from dbSNP and Humsavar for SENP3-EIF4A1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10438740 -- 7,569,566(+) TCAAA(A/G)GCCAG intron-variant
rs10468481 -- 7,571,674(+) AGGGG(A/G)TGGCT intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1057086 -- 7,574,620(+) TACGC(C/G)TATGG nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs11078697 -- 7,565,912(+) AAATC(C/T)GTAAT intron-variant
rs11078698 -- 7,576,574(+) TGTCA(C/T)GCCTG nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SENP3-EIF4A1 Gene

Variant ID Type Subtype PubMed ID
esv2422288 CNV deletion 17116639
nsv457659 CNV loss 19166990
nsv574322 CNV loss 21841781
nsv960400 CNV duplication 23825009
nsv960401 CNV duplication 23825009

Relevant External Links for SENP3-EIF4A1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SENP3-EIF4A1 Gene

Disorders for SENP3-EIF4A1 Gene

Relevant External Links for SENP3-EIF4A1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SENP3-EIF4A1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SENP3-EIF4A1 Gene

Publications for SENP3-EIF4A1 Gene

  1. Genome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population. (PMID: 23118916) Yang M. … Mo Z. (PLoS ONE 2012) 3 64
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SENP3-EIF4A1 Gene

Sources for SENP3-EIF4A1 Gene

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