Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SENP3-EIF4A1 Gene

Subcategory (RNA class) for SENP3-EIF4A1 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for SENP3-EIF4A1 Gene

  • SENP3-EIF4A1 Readthrough (NMD Candidate) 2 3 5

External Ids for SENP3-EIF4A1 Gene

Previous GeneCards Identifiers for SENP3-EIF4A1 Gene

  • GC17U901629
  • GC17P007469
  • GC17P007568

Summaries for SENP3-EIF4A1 Gene

Entrez Gene Summary for SENP3-EIF4A1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring SUMO1/sentrin/SMT3 specific peptidase 3 (SENP3) and eukaryotic translation initiation factor 4A1 (EIF4A1) genes on chromosome 17. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for SENP3-EIF4A1 Gene

SENP3-EIF4A1 (SENP3-EIF4A1 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. GO annotations related to this gene include cysteine-type peptidase activity. An important paralog of this gene is SENP3.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SENP3-EIF4A1 Gene

Genomics for SENP3-EIF4A1 Gene

Regulatory Elements for SENP3-EIF4A1 Gene

Enhancers for SENP3-EIF4A1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SENP3-EIF4A1 on UCSC Golden Path with GeneCards custom track

Promoters for SENP3-EIF4A1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SENP3-EIF4A1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SENP3-EIF4A1 Gene

Chromosome:
17
Start:
7,561,992 bp from pter
End:
7,579,006 bp from pter
Size:
17,015 bases
Orientation:
Plus strand

Genomic View for SENP3-EIF4A1 Gene

Genes around SENP3-EIF4A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SENP3-EIF4A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SENP3-EIF4A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SENP3-EIF4A1 Gene

Proteins for SENP3-EIF4A1 Gene

  • Protein details for SENP3-EIF4A1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087X0R7
    Recommended name:
    Protein SENP3-EIF4A1
    Protein Accession:
    A0A087X0R7

    Protein attributes for SENP3-EIF4A1 Gene

    Size:
    540 amino acids
    Molecular mass:
    61278 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SENP3-EIF4A1 Gene

Proteomics data for SENP3-EIF4A1 Gene at MOPED

Post-translational modifications for SENP3-EIF4A1 Gene

No Post-translational modifications

Other Protein References for SENP3-EIF4A1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for SENP3-EIF4A1 Gene

Domains & Families for SENP3-EIF4A1 Gene

Protein Domains for SENP3-EIF4A1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SENP3-EIF4A1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SENP3-EIF4A1 Gene

Function for SENP3-EIF4A1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SENP3-EIF4A1 Gene

Localization for SENP3-EIF4A1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SENP3-EIF4A1 Gene

Pathways & Interactions for SENP3-EIF4A1 Gene

SuperPathways for SENP3-EIF4A1 Gene

No Data Available

Interacting Proteins for SENP3-EIF4A1 Gene

Gene Ontology (GO) - Biological Process for SENP3-EIF4A1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SENP3-EIF4A1 Gene

Drugs & Compounds for SENP3-EIF4A1 Gene

No Compound Related Data Available

Transcripts for SENP3-EIF4A1 Gene

mRNA/cDNA for SENP3-EIF4A1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SENP3-EIF4A1 Gene

No ASD Table

Relevant External Links for SENP3-EIF4A1 Gene

GeneLoc Exon Structure for
SENP3-EIF4A1
ECgene alternative splicing isoforms for
SENP3-EIF4A1

Expression for SENP3-EIF4A1 Gene

mRNA expression in normal human tissues for SENP3-EIF4A1 Gene

genes like me logo Genes that share expression patterns with SENP3-EIF4A1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SENP3-EIF4A1 Gene

Orthologs for SENP3-EIF4A1 Gene

Evolution for SENP3-EIF4A1 Gene

ENSEMBL:
Gene Tree for SENP3-EIF4A1 (if available)
TreeFam:
Gene Tree for SENP3-EIF4A1 (if available)

No data available for Orthologs for SENP3-EIF4A1 Gene

Paralogs for SENP3-EIF4A1 Gene

Paralogs for SENP3-EIF4A1 Gene

genes like me logo Genes that share paralogs with SENP3-EIF4A1: view

Variants for SENP3-EIF4A1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SENP3-EIF4A1 Gene

Variant ID Type Subtype PubMed ID
esv2422288 CNV Deletion 17116639
nsv457659 CNV Loss 19166990
nsv907651 CNV Loss 21882294

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for SENP3-EIF4A1 Gene

Disorders for SENP3-EIF4A1 Gene

Relevant External Links for SENP3-EIF4A1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SENP3-EIF4A1

No disorders were found for SENP3-EIF4A1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SENP3-EIF4A1 Gene

Publications for SENP3-EIF4A1 Gene

  1. Genome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population. (PMID: 23118916) Yang M. … Mo Z. (PLoS ONE 2012) 3 67
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SENP3-EIF4A1 Gene

Sources for SENP3-EIF4A1 Gene

Content