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Aliases for SENCR Gene

Subcategory (RNA class) for SENCR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SENCR Gene

  • Smooth Muscle And Endothelial Cell Enriched Migration/Differentiation-Associated Long Non-Coding RNA 2 3 5
  • FLI1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • FLI1 Antisense RNA 1 2
  • FLI1-AS1 3
  • LncRNA9 3

External Ids for SENCR Gene

Previous HGNC Symbols for SENCR Gene

  • FLI1-AS1

Previous GeneCards Identifiers for SENCR Gene

  • GC11M128564

Summaries for SENCR Gene

GeneCards Summary for SENCR Gene

SENCR (Smooth Muscle And Endothelial Cell Enriched Migration/Differentiation-Associated Long Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SENCR Gene

Genomics for SENCR Gene

Regulatory Elements for SENCR Gene

Enhancers for SENCR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F128707 1.6 FANTOM5 Ensembl ENCODE 12.7 -28.6 -28579 35.2 HDGF PKNOX1 WRNIP1 SIN3A FEZF1 ZNF143 FOS ZNF263 JUNB TSHZ1 FLI1 SENCR LOC101929538 KCNJ1 ETS1 KCNJ5 GC11P128789
GH11F128619 1.6 FANTOM5 Ensembl ENCODE 11.8 +70.0 70023 13.2 PKNOX1 SIN3A RAD21 ZBTB40 ZNF335 ZNF143 FOS DEK ZNF654 JUNB FLI1 ETS1 SENCR LOC101929517 C11orf45 LOC105369568 GC11P128667
GH11F128288 1.6 FANTOM5 Ensembl ENCODE 10.5 +398.0 398010 18.3 HDGF TBP PKNOX1 TBL1XR1 WRNIP1 BMI1 FEZF1 RAD21 YY1 CBX5 ETS1 FLI1 LOC101929517 SENCR GC11M128298 GC11P128293
GH11F128653 0.9 Ensembl ENCODE 12.5 +42.0 42019 1.2 CTCF MTA2 MAFG RAD21 TBX21 GABPA IKZF1 NFE2 MAFK NFE2L2 FLI1 LOC101929538 SENCR LOC101929517 GC11P128667 LOC105369568
GH11F128745 0.9 Ensembl ENCODE 12.4 -50.7 -50705 3.5 CTCF RFX1 MAFG ZNF589 ZNF316 POLR2A PRDM1 MAFK SENCR FLI1 GC11P128789
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SENCR on UCSC Golden Path with GeneCards custom track

Promoters for SENCR Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001574837 1523 4601 PKNOX1 FEZF1 ZNF2 GLIS2 KLF7 JUNB ZNF488 TSHZ1 REST ZNF623

Genomic Location for SENCR Gene

Chromosome:
11
Start:
128,691,672 bp from pter
End:
128,696,023 bp from pter
Size:
4,352 bases
Orientation:
Minus strand

Genomic View for SENCR Gene

Genes around SENCR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SENCR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SENCR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SENCR Gene

Proteins for SENCR Gene

Post-translational modifications for SENCR Gene

No Post-translational modifications

No data available for DME Specific Peptides for SENCR Gene

Domains & Families for SENCR Gene

Gene Families for SENCR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SENCR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SENCR Gene

Function for SENCR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SENCR Gene

Localization for SENCR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SENCR Gene

Pathways & Interactions for SENCR Gene

SuperPathways for SENCR Gene

No Data Available

Interacting Proteins for SENCR Gene

Gene Ontology (GO) - Biological Process for SENCR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SENCR Gene

Transcripts for SENCR Gene

mRNA/cDNA for SENCR Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SENCR Gene

No ASD Table

Relevant External Links for SENCR Gene

GeneLoc Exon Structure for
SENCR
ECgene alternative splicing isoforms for
SENCR

Expression for SENCR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SENCR Gene

mRNA differential expression in normal tissues according to GTEx for SENCR Gene

This gene is overexpressed in Whole Blood (x7.9) and Spleen (x6.8).

NURSA nuclear receptor signaling pathways regulating expression of SENCR Gene:

SENCR
genes like me logo Genes that share expression patterns with SENCR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SENCR Gene

Orthologs for SENCR Gene

Evolution for SENCR Gene

ENSEMBL:
Gene Tree for SENCR (if available)
TreeFam:
Gene Tree for SENCR (if available)

No data available for Orthologs for SENCR Gene

Paralogs for SENCR Gene

No data available for Paralogs for SENCR Gene

Variants for SENCR Gene

Sequence variations from dbSNP and Humsavar for SENCR Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10893909 -- 128,695,139(+) CGCGC(C/T)CGCCC intron-variant
rs111941192 -- 128,694,587(+) AGGGT(A/G)CGGAA intron-variant
rs11221436 -- 128,694,592(+) ACGGA(A/C)CGGAG intron-variant
rs11221437 -- 128,694,832(+) CTCCT(A/C)CAGAT intron-variant
rs11221438 -- 128,697,845(+) ctcca(A/G)gaatg intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SENCR Gene

Variant ID Type Subtype PubMed ID
nsv1070495 CNV deletion 25765185
nsv826128 CNV gain 20364138
nsv952759 CNV duplication 24416366

Relevant External Links for SENCR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SENCR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SENCR Gene

Disorders for SENCR Gene

Relevant External Links for SENCR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SENCR

No disorders were found for SENCR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SENCR Gene

Publications for SENCR Gene

  1. Identification and Initial Functional Characterization of a Human Vascular Cell-Enriched Long Noncoding RNA. (PMID: 24578380) Bell R.D. … Miano J.M. (Arterioscler. Thromb. Vasc. Biol. 2014) 2 3 64

Products for SENCR Gene

Sources for SENCR Gene

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