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Aliases for SEMA3B-AS1 Gene

Subcategory (RNA class) for SEMA3B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SEMA3B-AS1 Gene

  • SEMA3B Antisense RNA 1 (Head To Head) 2 3 5

External Ids for SEMA3B-AS1 Gene

Previous GeneCards Identifiers for SEMA3B-AS1 Gene

  • GC03M050309

Summaries for SEMA3B-AS1 Gene

GeneCards Summary for SEMA3B-AS1 Gene

SEMA3B-AS1 (SEMA3B Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SEMA3B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEMA3B-AS1 Gene

Genomics for SEMA3B-AS1 Gene

GeneHancer (GH) Regulatory Elements for SEMA3B-AS1 Gene

Promoters and enhancers for SEMA3B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I050257 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 -0.1 -130 19.3 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 SEMA3B SEMA3B-AS1 HYAL3 CYB561D2 IFRD2 GNAI2 AMT HYAL1 AMIGO3 DOCK3
GH03I050234 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.3 +22.1 22115 21.2 HDGF FOXA2 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF207 GNAI2 HYAL3 RBM5 SEMA3F-AS1 RBM6 HYAL1 CYB561D2 RHOA-IT1 AMT HEMK1
GH03I050227 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.4 +38.4 38371 4.8 HDGF ARID4B SIN3A DMAP1 YY1 E2F8 ZNF207 ZNF143 SP3 SP5 GNAI2 MIR5787 HYAL3 RBM6 SEMA3F-AS1 RBM5 SEMA3B SEMA3B-AS1 LSMEM2 TMEM115
GH03I050201 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.1 +63.3 63281 4.8 HDGF FOXA2 ARID4B DMAP1 ZNF48 YY1 ATF7 RXRA SP5 NFYC SLC38A3 RBM6 GNAI2 SEMA3B SEMA3B-AS1 LSMEM2 CYB561D2 HYAL3 SEMA3F SEMA3F-AS1
GH03I050192 Enhancer 1.2 Ensembl ENCODE 12.1 +72.9 72949 4.3 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 FOS HYAL3 RBM6 GNAI2 SEMA3F SEMA3F-AS1 SEMA3B SEMA3B-AS1 LSMEM2 HYAL1 IFRD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SEMA3B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SEMA3B-AS1 Gene

Genomic Locations for SEMA3B-AS1 Gene
chr3:50,266,641-50,267,371
(GRCh38/hg38)
Size:
731 bases
Orientation:
Minus strand
chr3:50,304,073-50,304,803
(GRCh37/hg19)

Genomic View for SEMA3B-AS1 Gene

Genes around SEMA3B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEMA3B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEMA3B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEMA3B-AS1 Gene

Proteins for SEMA3B-AS1 Gene

Post-translational modifications for SEMA3B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEMA3B-AS1 Gene

Domains & Families for SEMA3B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEMA3B-AS1 Gene

Function for SEMA3B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEMA3B-AS1 Gene

Localization for SEMA3B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEMA3B-AS1 Gene

Pathways & Interactions for SEMA3B-AS1 Gene

SuperPathways for SEMA3B-AS1 Gene

No Data Available

Interacting Proteins for SEMA3B-AS1 Gene

Gene Ontology (GO) - Biological Process for SEMA3B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEMA3B-AS1 Gene

Drugs & Compounds for SEMA3B-AS1 Gene

No Compound Related Data Available

Transcripts for SEMA3B-AS1 Gene

mRNA/cDNA for SEMA3B-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SEMA3B-AS1 Gene

No ASD Table

Relevant External Links for SEMA3B-AS1 Gene

GeneLoc Exon Structure for
SEMA3B-AS1
ECgene alternative splicing isoforms for
SEMA3B-AS1

Expression for SEMA3B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SEMA3B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SEMA3B-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.1).
genes like me logo Genes that share expression patterns with SEMA3B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEMA3B-AS1 Gene

Orthologs for SEMA3B-AS1 Gene

Evolution for SEMA3B-AS1 Gene

ENSEMBL:
Gene Tree for SEMA3B-AS1 (if available)
TreeFam:
Gene Tree for SEMA3B-AS1 (if available)

No data available for Orthologs for SEMA3B-AS1 Gene

Paralogs for SEMA3B-AS1 Gene

No data available for Paralogs for SEMA3B-AS1 Gene

Variants for SEMA3B-AS1 Gene

Sequence variations from dbSNP and Humsavar for SEMA3B-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000216160 -- 50,268,718(-) C/T upstream_transcript_variant
rs1000553484 -- 50,267,125(-) A/C intron_variant
rs1002088431 -- 50,268,449(-) T/C upstream_transcript_variant
rs1004260565 -- 50,267,873(-) A/C upstream_transcript_variant
rs1004731691 -- 50,266,679(-) G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SEMA3B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv602n27 CNV loss 19166990
dgv8316n54 CNV loss 21841781
dgv8317n54 CNV loss 21841781
esv2759148 CNV loss 17122850
nsv460531 CNV loss 19166990
nsv470561 CNV loss 18288195
nsv523560 CNV loss 19592680
nsv523662 CNV loss 19592680
nsv590255 CNV loss 21841781
nsv834692 CNV loss 17160897
nsv834693 CNV loss 17160897
nsv954855 CNV deletion 24416366

Additional Variant Information for SEMA3B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEMA3B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEMA3B-AS1 Gene

Disorders for SEMA3B-AS1 Gene

Additional Disease Information for SEMA3B-AS1

No disorders were found for SEMA3B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEMA3B-AS1 Gene

Publications for SEMA3B-AS1 Gene

No publications were found for SEMA3B-AS1 Gene.

Products for SEMA3B-AS1 Gene

Sources for SEMA3B-AS1 Gene

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