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Aliases for SEC62-AS1 Gene

Subcategory (RNA class) for SEC62-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SEC62-AS1 Gene

  • SEC62 Antisense RNA 1 2 3 5
  • SEC62 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SEC62-AS1 Gene

Previous GeneCards Identifiers for SEC62-AS1 Gene

  • GC00U933520
  • GC03M169697

Summaries for SEC62-AS1 Gene

GeneCards Summary for SEC62-AS1 Gene

SEC62-AS1 (SEC62 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SEC62-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEC62-AS1 Gene

Genomics for SEC62-AS1 Gene

GeneHancer (GH) Regulatory Elements for SEC62-AS1 Gene

Promoters and enhancers for SEC62-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I169657 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 41.9 +322.0 322047 12.4 PKNOX1 FOXA2 ARNT ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B MECOM MYNN ENSG00000270096 PHC3 SEC62-AS1 PRKCI RPL22P1 SLC7A14 ACTRT3 ENSG00000242795
GH03I170221 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE 25.1 -237.6 -237586 3.4 HDGF PKNOX1 CLOCK ARNT NEUROD1 SIN3A ZNF2 ZBTB7B YY1 SLC30A9 PRKCI ENSG00000270096 MYNN SEC62-AS1 PHC3 RPL22P1 GPR160 RPL22L1 SLC7A14 LRRC34
GH03I170907 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 22.4 -923.1 -923101 2.9 CLOCK MLX ARNT ARID4B SIN3A DMAP1 ZNF2 POLR2B CBX5 ZNF302 EIF5A2 PHC3 SEC62-AS1 RPL22L1 PRKCI GC03M170953
GH03I169762 Promoter/Enhancer 1.8 Ensembl ENCODE 20.4 +221.3 221296 3.1 HDGF SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B ENSG00000277925 GC03M169767 GC03M169768 GC03M169769 TERC MYNN SEC62-AS1 PHC3 PRKCI RPL22P1
GH03I169771 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.1 +212.6 212635 3.4 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 MYNN PIR36992 TRV-AAC1-1 PHC3 PRKCI SEC62-AS1 CLDN11 LRRC34 ENSG00000270096 ENSG00000269889
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SEC62-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SEC62-AS1 Gene

Genomic Locations for SEC62-AS1 Gene
chr3:169,978,536-169,985,715
(GRCh38/hg38)
Size:
7,180 bases
Orientation:
Minus strand
chr3:169,696,324-169,703,503
(GRCh37/hg19)

Genomic View for SEC62-AS1 Gene

Genes around SEC62-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEC62-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEC62-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SEC62-AS1 Gene

Proteins for SEC62-AS1 Gene

Post-translational modifications for SEC62-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEC62-AS1 Gene

Domains & Families for SEC62-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEC62-AS1 Gene

Function for SEC62-AS1 Gene

Phenotypes From GWAS Catalog for SEC62-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEC62-AS1 Gene

Localization for SEC62-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEC62-AS1 Gene

Pathways & Interactions for SEC62-AS1 Gene

SuperPathways for SEC62-AS1 Gene

No Data Available

Interacting Proteins for SEC62-AS1 Gene

Gene Ontology (GO) - Biological Process for SEC62-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEC62-AS1 Gene

Drugs & Compounds for SEC62-AS1 Gene

No Compound Related Data Available

Transcripts for SEC62-AS1 Gene

mRNA/cDNA for SEC62-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SEC62-AS1 Gene

No ASD Table

Relevant External Links for SEC62-AS1 Gene

GeneLoc Exon Structure for
SEC62-AS1
ECgene alternative splicing isoforms for
SEC62-AS1

Expression for SEC62-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SEC62-AS1 Gene

genes like me logo Genes that share expression patterns with SEC62-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEC62-AS1 Gene

Orthologs for SEC62-AS1 Gene

Evolution for SEC62-AS1 Gene

ENSEMBL:
Gene Tree for SEC62-AS1 (if available)
TreeFam:
Gene Tree for SEC62-AS1 (if available)

No data available for Orthologs for SEC62-AS1 Gene

Paralogs for SEC62-AS1 Gene

No data available for Paralogs for SEC62-AS1 Gene

Variants for SEC62-AS1 Gene

Additional Variant Information for SEC62-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEC62-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SEC62-AS1 Gene

Disorders for SEC62-AS1 Gene

No disorders were found for SEC62-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SEC62-AS1 Gene

Publications for SEC62-AS1 Gene

  1. Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. (PMID: 11752456) Xu XR … Han ZG (Proceedings of the National Academy of Sciences of the United States of America 2001) 3 58

Products for SEC62-AS1 Gene

Sources for SEC62-AS1 Gene

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