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Aliases for SEC61G Gene

Aliases for SEC61G Gene

  • Sec61 Gamma Subunit 2 3
  • Protein Transport Protein SEC61 Gamma Subunit 3
  • Protein Transport Protein Sec61 Subunit Gamma 3
  • SSS1 3

External Ids for SEC61G Gene

Summaries for SEC61G Gene

Entrez Gene Summary for SEC61G Gene

  • The Sec61 complex is the central component of the protein translocation apparatus of the endoplasmic reticulum (ER) membrane. Oligomers of the Sec61 complex form a transmembrane channel where proteins are translocated across and integrated into the ER membrane. This complex consists of three membrane proteins- alpha, beta, and gamma. This gene encodes the gamma-subunit protein. Alternatively spliced transcript variants encoding the same protein have been identified. [provided by RefSeq, Jul 2008]

GeneCards Summary for SEC61G Gene

SEC61G (Sec61 Gamma Subunit) is a Protein Coding gene. Among its related pathways are Class I MHC mediated antigen processing and presentation and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include protein transporter activity and P-P-bond-hydrolysis-driven protein transmembrane transporter activity.

UniProtKB/Swiss-Prot for SEC61G Gene

  • Necessary for protein translocation in the endoplasmic reticulum.

Gene Wiki entry for SEC61G Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEC61G Gene

Genomics for SEC61G Gene

Genomic Location for SEC61G Gene

Start:
54,752,247 bp from pter
End:
54,759,974 bp from pter
Size:
7,728 bases
Orientation:
Minus strand

Genomic View for SEC61G Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SEC61G Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEC61G Gene

Regulatory Elements for SEC61G Gene

Proteins for SEC61G Gene

  • Protein details for SEC61G Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P60059-SC61G_HUMAN
    Recommended name:
    Protein transport protein Sec61 subunit gamma
    Protein Accession:
    P60059
    Secondary Accessions:
    • B2R4J0
    • P38384
    • Q6IB25

    Protein attributes for SEC61G Gene

    Size:
    68 amino acids
    Molecular mass:
    7741 Da
    Quaternary structure:
    • Heterotrimeric complex composed of SEC61-alpha, SEC61-beta and SEC61-gamma.

neXtProt entry for SEC61G Gene

Proteomics data for SEC61G Gene at MOPED

Post-translational modifications for SEC61G Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SEC61G Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for SEC61G Gene

Domains for SEC61G Gene

UniProtKB/Swiss-Prot:

SC61G_HUMAN
Family:
  • Belongs to the SecE/SEC61-gamma family.:
    • P60059
genes like me logo Genes that share domains with SEC61G: view

No data available for Gene Families for SEC61G Gene

Function for SEC61G Gene

Molecular function for SEC61G Gene

UniProtKB/Swiss-Prot Function: Necessary for protein translocation in the endoplasmic reticulum.

Gene Ontology (GO) - Molecular Function for SEC61G Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008565 protein transporter activity ISS --
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEA --
genes like me logo Genes that share ontologies with SEC61G: view

Phenotypes for SEC61G Gene

GenomeRNAi human phenotypes for SEC61G:
genes like me logo Genes that share phenotypes with SEC61G: view

miRNA for SEC61G Gene

miRTarBase miRNAs that target SEC61G

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for SEC61G Gene

Localization for SEC61G Gene

Subcellular locations from UniProtKB/Swiss-Prot for SEC61G Gene

Endoplasmic reticulum membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SEC61G Gene COMPARTMENTS Subcellular localization image for SEC61G gene
Compartment Confidence
endoplasmic reticulum 5
cytosol 2
nucleus 2
golgi apparatus 1
mitochondrion 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for SEC61G Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum --
GO:0005789 endoplasmic reticulum membrane TAS --
GO:0005829 cytosol TAS --
GO:0016020 membrane IDA 22375059
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SEC61G: view

Pathways for SEC61G Gene

genes like me logo Genes that share pathways with SEC61G: view

Gene Ontology (GO) - Biological Process for SEC61G Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I TAS --
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS --
GO:0006412 translation TAS --
GO:0006605 protein targeting --
GO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS --
genes like me logo Genes that share ontologies with SEC61G: view

Transcripts for SEC61G Gene

Unigene Clusters for SEC61G Gene

Sec61 gamma subunit:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SEC61G Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e ^ 3a · 3b ^ 4a · 4b ^ 5
SP1: - -
SP2: -
SP3: -
SP4: -
SP5: -

Relevant External Links for SEC61G Gene

GeneLoc Exon Structure for
SEC61G
ECgene alternative splicing isoforms for
SEC61G

Expression for SEC61G Gene

mRNA expression in normal human tissues for SEC61G Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SEC61G Gene

SOURCE GeneReport for Unigene cluster for SEC61G Gene Hs.488282

genes like me logo Genes that share expressions with SEC61G: view

Orthologs for SEC61G Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SEC61G Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SEC61G 36
  • 100 (n)
  • 100 (a)
SEC61G 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SEC61G 36
  • 96.57 (n)
  • 100 (a)
SEC61G 37
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SEC61G 36
  • 96.57 (n)
  • 100 (a)
SEC61G 37
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm10177 16
LOC102637269 36
  • 92.65 (n)
  • 100 (a)
Sec61g 37
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SEC61G 37
  • 100 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SEC61G 37
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC499136 36
  • 88.89 (n)
  • 93.33 (a)
chicken
(Gallus gallus)
Aves SEC61G 36
  • 88.73 (n)
  • 100 (a)
SEC61G 37
  • 100 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SEC61G 37
  • 100 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia sec61g-A 36
tropical clawed frog
(Silurana tropicalis)
Amphibia sec61g 36
  • 82.35 (n)
  • 98.53 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10075 36
zebrafish
(Danio rerio)
Actinopterygii hmzehn1231 36
sec61g 36
  • 82.35 (n)
  • 100 (a)
sec61g 37
  • 100 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG13426 37
  • 35 (a)
OneToMany
CG8860 36
  • 70.15 (n)
  • 86.57 (a)
CG8860 37
  • 82 (a)
OneToMany
Sec61gamma 37
  • 81 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea emo-1 36
  • 74.51 (n)
  • 85.29 (a)
emo-1 37
  • 82 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SSS1 37
  • 38 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G24920 36
  • 65.69 (n)
  • 72.06 (a)
rice
(Oryza sativa)
Liliopsida Os02g0178400 36
  • 59.31 (n)
  • 72.06 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.15317 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3850 37
  • 87 (a)
OneToOne
Species with no ortholog for SEC61G:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SEC61G Gene

ENSEMBL:
Gene Tree for SEC61G (if available)
TreeFam:
Gene Tree for SEC61G (if available)

Paralogs for SEC61G Gene

No data available for Paralogs for SEC61G Gene

Variants for SEC61G Gene

Sequence variations from dbSNP and Humsavar for SEC61G Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1802301 -- 54,752,298(-) TTTCC(C/T)TTCAA utr-variant-3-prime
rs1919828 -- 54,754,606(-) GATTT(C/T)TGAAG intron-variant
rs2464958 -- 54,753,284(+) CAAGA(C/T)TCCAT intron-variant
rs2699214 -- 54,754,459(+) TACAG(C/T)TGGCA intron-variant
rs2709283 -- 54,753,179(+) TCCCA(A/G)CTACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SEC61G Gene

Variant ID Type Subtype PubMed ID
esv2734425 CNV Deletion 23290073

Relevant External Links for SEC61G Gene

HapMap Linkage Disequilibrium report
SEC61G

Disorders for SEC61G Gene

Relevant External Links for SEC61G

Genetic Association Database (GAD)
SEC61G
genes like me logo Genes that share disorders with SEC61G: view

No data available for UniProtKB/Swiss-Prot for SEC61G Gene

Publications for SEC61G Gene

  1. Evolutionary conservation of components of the protein translocation complex. (PMID: 8107851) Hartmann E. … Rapoport T.A. (Nature 1994) 2 3
  2. The Sec61 complex is located in both the ER and the ER-Golgi intermediate compartment. (PMID: 10212142) Greenfield J.J. … High S. (J. Cell. Sci. 1999) 2 3
  3. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3

Products for SEC61G Gene

  • antibodies-online peptides for SEC61G
  • antibodies-online antibodies for SEC61G
  • antibodies-online kits for SEC61G

Sources for SEC61G Gene

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