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Aliases for SEC61B Gene

Aliases for SEC61B Gene

  • Sec61 Beta Subunit 2 3

External Ids for SEC61B Gene

Previous GeneCards Identifiers for SEC61B Gene

  • GC09P092784
  • GC09P093728
  • GC00U912984
  • GC09P097364
  • GC09P099064
  • GC09P101024
  • GC09P101984
  • GC09P071583

Summaries for SEC61B Gene

Entrez Gene Summary for SEC61B Gene

  • The Sec61 complex is the central component of the protein translocation apparatus of the endoplasmic reticulum (ER) membrane. Oligomers of the Sec61 complex form a transmembrane channel where proteins are translocated across and integrated into the ER membrane. This complex consists of three membrane proteins- alpha, beta, and gamma. This gene encodes the beta-subunit protein. The Sec61 subunits are also observed in the post-ER compartment, suggesting that these proteins can escape the ER and recycle back. There is evidence for multiple polyadenylated sites for this transcript. [provided by RefSeq, Jul 2008]

GeneCards Summary for SEC61B Gene

SEC61B (Sec61 Beta Subunit) is a Protein Coding gene. Among its related pathways are Class I MHC mediated antigen processing and presentation and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include epidermal growth factor binding.

UniProtKB/Swiss-Prot for SEC61B Gene

  • Necessary for protein translocation in the endoplasmic reticulum

Gene Wiki entry for SEC61B Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEC61B Gene

Genomics for SEC61B Gene

Regulatory Elements for SEC61B Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SEC61B Gene

Start:
99,222,064 bp from pter
End:
99,230,619 bp from pter
Size:
8,556 bases
Orientation:
Plus strand

Genomic View for SEC61B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SEC61B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEC61B Gene

Proteins for SEC61B Gene

  • Protein details for SEC61B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P60468-SC61B_HUMAN
    Recommended name:
    Protein transport protein Sec61 subunit beta
    Protein Accession:
    P60468
    Secondary Accessions:
    • P38390
    • P38391
    • Q6IBC1

    Protein attributes for SEC61B Gene

    Size:
    96 amino acids
    Molecular mass:
    9974 Da
    Quaternary structure:
    • Heterotrimeric complex composed of SEC61-alpha, SEC61-beta and SEC61-gamma. Part of a complex composed of SEC61, SEC62 and SEC63. Interacts with SEC62.

neXtProt entry for SEC61B Gene

Proteomics data for SEC61B Gene at MOPED

Post-translational modifications for SEC61B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SEC61B Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for SEC61B Gene

Domains for SEC61B Gene

Protein Domains for SEC61B Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for SEC61B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P60468

UniProtKB/Swiss-Prot:

SC61B_HUMAN :
  • P60468
Family:
  • Belongs to the SEC61-beta family.
genes like me logo Genes that share domains with SEC61B: view

No data available for Gene Families for SEC61B Gene

Function for SEC61B Gene

Molecular function for SEC61B Gene

UniProtKB/Swiss-Prot Function: Necessary for protein translocation in the endoplasmic reticulum

Gene Ontology (GO) - Molecular Function for SEC61B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 18555783
GO:0044822 poly(A) RNA binding IDA 22658674
GO:0048408 epidermal growth factor binding IPI 19602593
genes like me logo Genes that share ontologies with SEC61B: view

Animal Model Products

CRISPR Products

miRNA for SEC61B Gene

miRTarBase miRNAs that target SEC61B

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SEC61B

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SEC61B Gene

Localization for SEC61B Gene

Subcellular locations from UniProtKB/Swiss-Prot for SEC61B Gene

Endoplasmic reticulum membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SEC61B Gene COMPARTMENTS Subcellular localization image for SEC61B gene
Compartment Confidence
endoplasmic reticulum 5
mitochondrion 2
cytosol 1
extracellular 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for SEC61B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IDA --
GO:0005784 Sec61 translocon complex IEA --
GO:0005789 endoplasmic reticulum membrane TAS --
GO:0005829 cytosol TAS --
GO:0016020 membrane IDA 22375059
genes like me logo Genes that share ontologies with SEC61B: view

Pathways for SEC61B Gene

genes like me logo Genes that share pathways with SEC61B: view

Gene Ontology (GO) - Biological Process for SEC61B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000060 protein import into nucleus, translocation IMP 17215517
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I TAS --
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS --
GO:0006412 translation TAS --
GO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS --
genes like me logo Genes that share ontologies with SEC61B: view

Transcripts for SEC61B Gene

mRNA/cDNA for SEC61B Gene

Unigene Clusters for SEC61B Gene

Sec61 beta subunit:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SEC61B

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SEC61B Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b
SP1: - -
SP2: - - - - - -
SP3: - - -
SP4: - -
SP5:

Relevant External Links for SEC61B Gene

GeneLoc Exon Structure for
SEC61B
ECgene alternative splicing isoforms for
SEC61B

Expression for SEC61B Gene

mRNA expression in normal human tissues for SEC61B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SEC61B Gene

SOURCE GeneReport for Unigene cluster for SEC61B Gene Hs.191887

genes like me logo Genes that share expressions with SEC61B: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SEC61B Gene

Orthologs for SEC61B Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SEC61B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SEC61B 35
  • 100 (n)
  • 100 (a)
SEC61B 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SEC61B 35
  • 93.4 (n)
  • 98.96 (a)
SEC61B 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SEC61B 35
  • 93.75 (n)
  • 100 (a)
SEC61B 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sec61b 35
  • 88.89 (n)
  • 98.96 (a)
Sec61b 16
Sec61b 36
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SEC61B 36
  • 96 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sec61b 35
  • 89.93 (n)
  • 98.96 (a)
chicken
(Gallus gallus)
Aves SEC61B 35
  • 81.6 (n)
  • 93.75 (a)
SEC61B 36
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SEC61B 36
  • 94 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia sec61beta-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia sec61b 35
  • 73.61 (n)
  • 90.62 (a)
Str.1470 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8291 35
zebrafish
(Danio rerio)
Actinopterygii Dr.28987 35
sec61b 35
  • 72.92 (n)
  • 81.25 (a)
sec61b 36
  • 80 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011504 35
  • 62.46 (n)
  • 70.53 (a)
fruit fly
(Drosophila melanogaster)
Insecta Sec61beta 35
  • 66.67 (n)
  • 71.58 (a)
Sec61beta 36
  • 68 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y38F2AR.9 36
  • 60 (a)
OneToOne
wheat
(Triticum aestivum)
Liliopsida Ta.11126 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 60 (a)
OneToOne
Species with no ortholog for SEC61B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for SEC61B Gene

ENSEMBL:
Gene Tree for SEC61B (if available)
TreeFam:
Gene Tree for SEC61B (if available)

Paralogs for SEC61B Gene

Pseudogenes.org Pseudogenes for SEC61B Gene

genes like me logo Genes that share paralogs with SEC61B: view

No data available for Paralogs for SEC61B Gene

Variants for SEC61B Gene

Sequence variations from dbSNP and Humsavar for SEC61B Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs701374 -- 99,227,215(-) aattt(C/T)tgctc intron-variant
rs1648649 -- 99,227,263(-) tttga(A/G)aagga intron-variant
rs1648650 -- 99,227,261(-) TGAGA(A/T)GGAGT intron-variant
rs1755667 -- 99,227,173(+) aggca(A/G)aagaa intron-variant
rs1755668 -- 99,227,176(+) cagaa(A/G)aatcg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SEC61B Gene

Variant ID Type Subtype PubMed ID
nsv831666 CNV Gain 17160897

Relevant External Links for SEC61B Gene

HapMap Linkage Disequilibrium report
SEC61B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SEC61B Gene

Disorders for SEC61B Gene

No disorders were found for SEC61B Gene.

No data available for UniProtKB/Swiss-Prot for SEC61B Gene

Publications for SEC61B Gene

  1. Evolutionary conservation of components of the protein translocation complex. (PMID: 8107851) Hartmann E. … Rapoport T.A. (Nature 1994) 2 3 4
  2. The Sec61 complex is located in both the ER and the ER-Golgi intermediate compartment. (PMID: 10212142) Greenfield J.J. … High S. (J. Cell. Sci. 1999) 2 3
  3. Mammalian Sec61 is associated with Sec62 and Sec63. (PMID: 10799540) Meyer H.-A. … Hartmann E. (J. Biol. Chem. 2000) 3 4
  4. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for SEC61B Gene

Sources for SEC61B Gene

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