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Aliases for SEC24B-AS1 Gene

Subcategory (RNA class) for SEC24B-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SEC24B-AS1 Gene

  • SEC24B Antisense RNA 1 2 3
  • SEC24B Antisense RNA 1 (Non-Protein Coding) 2 3
  • LncRNA_BC009800 3
  • 1/2-SBSRNA4 3

External Ids for SEC24B-AS1 Gene

ORGUL Members for SEC24B-AS1 Gene

Previous GeneCards Identifiers for SEC24B-AS1 Gene

  • GC04M110270

Summaries for SEC24B-AS1 Gene

Entrez Gene Summary for SEC24B-AS1 Gene

  • This lncRNA contains a single Alu element which, along with 1/2-sbsRNA3, appears to target the 3' UTR Alu element in MTAP. Downregulation of the RNA appears to up-regulate the target. [provided by RefSeq, Feb 2011]

GeneCards Summary for SEC24B-AS1 Gene

SEC24B-AS1 (SEC24B Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEC24B-AS1 Gene

Genomics for SEC24B-AS1 Gene

Genomic Location for SEC24B-AS1 Gene

Start:
109,347,475 bp from pter
End:
109,433,817 bp from pter
Size:
86,343 bases
Orientation:
Minus strand

Genomic View for SEC24B-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SEC24B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEC24B-AS1 Gene

No data available for Regulatory Elements for SEC24B-AS1 Gene

Proteins for SEC24B-AS1 Gene

Post-translational modifications for SEC24B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEC24B-AS1 Gene

Domains for SEC24B-AS1 Gene

Gene Families for SEC24B-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SEC24B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEC24B-AS1 Gene

Function for SEC24B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SEC24B-AS1 Gene

Localization for SEC24B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SEC24B-AS1 Gene

Pathways for SEC24B-AS1 Gene

SuperPathways for SEC24B-AS1 Gene

No Data Available

Interacting Proteins for SEC24B-AS1 Gene

Gene Ontology (GO) - Biological Process for SEC24B-AS1 Gene

None

No data available for Pathways by source for SEC24B-AS1 Gene

Transcripts for SEC24B-AS1 Gene

mRNA/cDNA for SEC24B-AS1 Gene

(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SEC24B-AS1 Gene

SEC24B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SEC24B-AS1 Gene

No ASD Table

Relevant External Links for SEC24B-AS1 Gene

GeneLoc Exon Structure for
SEC24B-AS1
ECgene alternative splicing isoforms for
SEC24B-AS1

Expression for SEC24B-AS1 Gene

mRNA expression in normal human tissues for SEC24B-AS1 Gene

SOURCE GeneReport for Unigene cluster for SEC24B-AS1 Gene Hs.518927

genes like me logo Genes that share expressions with SEC24B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SEC24B-AS1 Gene

Orthologs for SEC24B-AS1 Gene

Evolution for SEC24B-AS1 Gene

ENSEMBL:
Gene Tree for SEC24B-AS1 (if available)
TreeFam:
Gene Tree for SEC24B-AS1 (if available)

No data available for Orthologs for SEC24B-AS1 Gene

Paralogs for SEC24B-AS1 Gene

No data available for Paralogs for SEC24B-AS1 Gene

Variants for SEC24B-AS1 Gene

Sequence variations from dbSNP and Humsavar for SEC24B-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs11379722 -- 109,430,699(+) AAAAA(-/A)AAAAA nc-transcript-variant
rs35285633 -- 109,430,692(+) GTCTC(-/A)AAAAA nc-transcript-variant
rs55721905 -- 109,430,064(+) AAAAA(-/A)CACAG nc-transcript-variant
rs75548793 -- 109,430,063(+) AAGAG(-/CA)AAAAA nc-transcript-variant
rs75654882 -- 109,430,400(+) GGCTA(C/T)GATAA nc-transcript-variant

Relevant External Links for SEC24B-AS1 Gene

HapMap Linkage Disequilibrium report
SEC24B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SEC24B-AS1 Gene

Disorders for SEC24B-AS1 Gene

No disorders were found for SEC24B-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SEC24B-AS1 Gene

Publications for SEC24B-AS1 Gene

  1. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements. (PMID: 21307942) Gong C. … Maquat L.E. (Nature 2011) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SEC24B-AS1 Gene

Sources for SEC24B-AS1 Gene

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