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Aliases for SEC24B-AS1 Gene

Subcategory (RNA class) for SEC24B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SEC24B-AS1 Gene

  • SEC24B Antisense RNA 1 2 3 5
  • SEC24B Antisense RNA 1 (Non-Protein Coding) 2 3
  • LncRNA_BC009800 3
  • 1/2-SBSRNA4 3

External Ids for SEC24B-AS1 Gene

Previous GeneCards Identifiers for SEC24B-AS1 Gene

  • GC04M110270

Summaries for SEC24B-AS1 Gene

Entrez Gene Summary for SEC24B-AS1 Gene

  • This lncRNA contains a single Alu element which, along with 1/2-sbsRNA3, appears to target the 3' UTR Alu element in MTAP. Downregulation of the RNA appears to up-regulate the target. [provided by RefSeq, Feb 2011]

GeneCards Summary for SEC24B-AS1 Gene

SEC24B-AS1 (SEC24B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEC24B-AS1 Gene

Genomics for SEC24B-AS1 Gene

Regulatory Elements for SEC24B-AS1 Gene

Enhancers for SEC24B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G109559 1.1 ENCODE 16.5 -126.7 -126700 2.7 HDGF PKNOX1 SIN3A FEZF1 ZNF2 CBX5 ZNF143 ZNF207 FOS ZNF263 SEC24B-AS1 SEC24B SETP20 CDC42P4 MCUB PIR49237
GH04G109727 1.3 ENCODE dbSUPER 13.1 -295.9 -295937 4.2 HDGF PKNOX1 ATF1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF48 GTF3C2 PLA2G12A SEC24B SEC24B-AS1 CDC42P4 CFI SETP20 GAR1 CASP6
GH04G109801 0.8 ENCODE 10.7 -368.3 -368276 2.1 FEZF1 RAD21 RARA YY1 MIXL1 NFYC KAT8 NFIC PRDM6 CEBPA LRIT3 SEC24B-AS1 RRH GAR1 CFI PLA2G12A
GH04G108830 0.8 ENCODE 10.2 +603.0 603038 0.2 ZSCAN26 INSM2 FEZF1 ZSCAN5C ZNF600 ZNF391 GFI1B ZNF501 ZNF394 ZNF843 ZCCHC23 COL25A1 ETNPPL SEC24B-AS1 GC04M108805 GC04M108908
GH04G109365 0.8 ENCODE 5 +67.7 67697 0.8 CBX5 ETV6 RELB FOS CREM IKZF2 JUNB GATAD2B TBX21 IKZF1 ZCCHC23 COL25A1 SEC24B-AS1 GC04P109364 PIR37678
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SEC24B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SEC24B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000171830 -283 2601 ATF1 ARNT CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF48 ZNF766 GLIS2

Genomic Location for SEC24B-AS1 Gene

Chromosome:
4
Start:
109,347,475 bp from pter
End:
109,433,817 bp from pter
Size:
86,343 bases
Orientation:
Minus strand

Genomic View for SEC24B-AS1 Gene

Genes around SEC24B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEC24B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEC24B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEC24B-AS1 Gene

Proteins for SEC24B-AS1 Gene

Post-translational modifications for SEC24B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEC24B-AS1 Gene

Domains & Families for SEC24B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEC24B-AS1 Gene

Function for SEC24B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEC24B-AS1 Gene

Localization for SEC24B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SEC24B-AS1 Gene

Pathways & Interactions for SEC24B-AS1 Gene

SuperPathways for SEC24B-AS1 Gene

No Data Available

Interacting Proteins for SEC24B-AS1 Gene

Gene Ontology (GO) - Biological Process for SEC24B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEC24B-AS1 Gene

Drugs & Compounds for SEC24B-AS1 Gene

No Compound Related Data Available

Transcripts for SEC24B-AS1 Gene

mRNA/cDNA for SEC24B-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SEC24B-AS1 Gene

SEC24B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SEC24B-AS1 Gene

No ASD Table

Relevant External Links for SEC24B-AS1 Gene

GeneLoc Exon Structure for
SEC24B-AS1
ECgene alternative splicing isoforms for
SEC24B-AS1

Expression for SEC24B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SEC24B-AS1 Gene

SOURCE GeneReport for Unigene cluster for SEC24B-AS1 Gene:

Hs.518927
genes like me logo Genes that share expression patterns with SEC24B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEC24B-AS1 Gene

Orthologs for SEC24B-AS1 Gene

Evolution for SEC24B-AS1 Gene

ENSEMBL:
Gene Tree for SEC24B-AS1 (if available)
TreeFam:
Gene Tree for SEC24B-AS1 (if available)

No data available for Orthologs for SEC24B-AS1 Gene

Paralogs for SEC24B-AS1 Gene

No data available for Paralogs for SEC24B-AS1 Gene

Variants for SEC24B-AS1 Gene

Sequence variations from dbSNP and Humsavar for SEC24B-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000955928 -- 109,432,253(+) TAAAA(A/C)ACAGG intron-variant, upstream-variant-2KB
rs1001070489 -- 109,431,947(+) AAGGC(C/T)TATTC intron-variant, upstream-variant-2KB
rs1001356333 -- 109,430,514(+) CCCTG(A/C/G)CCAAC nc-transcript-variant
rs1001387319 -- 109,430,293(+) GGACA(A/C)CTAAT nc-transcript-variant
rs10016533 -- 109,432,898(+) GTGAG(C/T)ATGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SEC24B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv9215n54 CNV gain 21841781
dgv9216n54 CNV gain 21841781
esv24031 CNV loss 19812545
nsv4461 CNV insertion 18451855
nsv461613 CNV gain 19166990
nsv595129 CNV gain 21841781
nsv595132 CNV loss 21841781
nsv595136 CNV gain 21841781

Relevant External Links for SEC24B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEC24B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEC24B-AS1 Gene

Disorders for SEC24B-AS1 Gene

Relevant External Links for SEC24B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SEC24B-AS1

No disorders were found for SEC24B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEC24B-AS1 Gene

Publications for SEC24B-AS1 Gene

  1. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements. (PMID: 21307942) Gong C. … Maquat L.E. (Nature 2011) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SEC24B-AS1 Gene

Sources for SEC24B-AS1 Gene

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