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Aliases for SEC1P Gene

Aliases for SEC1P Gene

  • Secretory Blood Group 1, Pseudogene 2 3 5
  • Alpha(1,2) Fucosyltransferase Pseudogene 3
  • SEC1 3

External Ids for SEC1P Gene

Previous GeneCards Identifiers for SEC1P Gene

  • GC19P049146

Summaries for SEC1P Gene

GeneCards Summary for SEC1P Gene

SEC1P (Secretory Blood Group 1, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEC1P Gene

Genomics for SEC1P Gene

Regulatory Elements for SEC1P Gene

Enhancers for SEC1P Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SEC1P on UCSC Golden Path with GeneCards custom track

Promoters for SEC1P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SEC1P on UCSC Golden Path with GeneCards custom track

Genomic Location for SEC1P Gene

Chromosome:
19
Start:
48,638,039 bp from pter
End:
48,682,245 bp from pter
Size:
44,207 bases
Orientation:
Plus strand

Genomic View for SEC1P Gene

Genes around SEC1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEC1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEC1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEC1P Gene

Proteins for SEC1P Gene

Post-translational modifications for SEC1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEC1P Gene

Domains & Families for SEC1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEC1P Gene

Function for SEC1P Gene

Phenotypes for SEC1P Gene

genes like me logo Genes that share phenotypes with SEC1P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEC1P Gene

Localization for SEC1P Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SEC1P Gene COMPARTMENTS Subcellular localization image for SEC1P gene
Compartment Confidence
endosome 1
lysosome 1
plasma membrane 1
vacuole 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SEC1P Gene

Pathways & Interactions for SEC1P Gene

SuperPathways for SEC1P Gene

No Data Available

Interacting Proteins for SEC1P Gene

Gene Ontology (GO) - Biological Process for SEC1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEC1P Gene

Drugs & Compounds for SEC1P Gene

No Compound Related Data Available

Transcripts for SEC1P Gene

mRNA/cDNA for SEC1P Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SEC1P Gene

Secretory blood group 1, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SEC1P Gene

No ASD Table

Relevant External Links for SEC1P Gene

GeneLoc Exon Structure for
SEC1P
ECgene alternative splicing isoforms for
SEC1P

Expression for SEC1P Gene

mRNA expression in normal human tissues for SEC1P Gene

mRNA differential expression in normal tissues according to GTEx for SEC1P Gene

This gene is overexpressed in Testis (x14.6).

SOURCE GeneReport for Unigene cluster for SEC1P Gene Hs.443160

genes like me logo Genes that share expression patterns with SEC1P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SEC1P Gene

Orthologs for SEC1P Gene

Evolution for SEC1P Gene

ENSEMBL:
Gene Tree for SEC1P (if available)
TreeFam:
Gene Tree for SEC1P (if available)

No data available for Orthologs for SEC1P Gene

Paralogs for SEC1P Gene

No data available for Paralogs for SEC1P Gene

Variants for SEC1P Gene

Sequence variations from dbSNP and Humsavar for SEC1P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs12979920 -- 48,655,242(+) agaga(G/T)agaga intron-variant
rs8101298 -- 48,680,921(+) ACTGT(C/G)TACCT nc-transcript-variant
rs8103121 -- 48,654,881(+) TGCCT(A/G)TTCGT intron-variant
rs13343610 -- 48,658,520(+) atttt(A/G)agagt intron-variant
rs62130318 -- 48,653,878(+) CTCCC(A/G)AGTAG intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for SEC1P Gene

Disorders for SEC1P Gene

Relevant External Links for SEC1P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SEC1P

No disorders were found for SEC1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEC1P Gene

Publications for SEC1P Gene

  1. Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China. (PMID: 24941225) Liang Y. … Peng T. (PLoS ONE 2014) 3 67
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3
  3. Sec1-FUT2-Sec1 hybrid allele generated by interlocus gene conversion. (PMID: 18067503) Soejima M. … Koda Y. (Transfusion 2008) 3
  4. Evolution of alpha 2-fucosyltransferase genes in primates: relation between an intronic Alu-Y element and red cell expression of ABH antigens. (PMID: 10723735) Apoil P.A. … Blancher A. (Mol. Biol. Evol. 2000) 3
  5. Structure and expression of the gene encoding secretor-type galactoside 2-alpha-L-fucosyltransferase (FUT2). (PMID: 9219535) Koda Y. … Kimura H. (Eur. J. Biochem. 1997) 3

Products for SEC1P Gene

Sources for SEC1P Gene

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