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Aliases for SEC1P Gene

Aliases for SEC1P Gene

  • Secretory Blood Group 1, Pseudogene 2 3 5
  • Alpha(1,2) Fucosyltransferase Pseudogene 3
  • SEC1 3

External Ids for SEC1P Gene

Previous GeneCards Identifiers for SEC1P Gene

  • GC19P049146

Summaries for SEC1P Gene

GeneCards Summary for SEC1P Gene

SEC1P (Secretory Blood Group 1, Pseudogene) is a Pseudogene.

Additional gene information for SEC1P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEC1P Gene

Genomics for SEC1P Gene

Regulatory Elements for SEC1P Gene

Enhancers for SEC1P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H048539 1 Ensembl 32.7 -98.1 -98139 0 ATF1 FEZF1 ZNF2 ATF7 YY2 ZNF662 ZNF491 GLIS1 ZNF624 ZNF300 SNRNP70 BICRA SEC1P NOP53-AS1 CYTH2 BCAT2 CA11 RUVBL2 ENSG00000268093 ZSWIM9
GH19H048958 2.1 FANTOM5 Ensembl ENCODE dbSUPER 14 +326.0 325991 10 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A NFYC MEF2D NUP62 PRR12 ENSG00000269321 RUVBL2 PPP1R15A TSKS ENSG00000268047 IRF3 PIH1D1 CPT1C
GH19H048632 1.7 Ensembl ENCODE dbSUPER 15.9 -1.6 -1563 7 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 GLIS1 NBN PRR12 SNRNP70 GRWD1 PIH1D1 SNORD35A RPS11 NOP53-AS1 NOP53 RPL18 ALDH16A1
GH19H048612 1.7 Ensembl ENCODE dbSUPER 15.1 -21.3 -21277 7 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 ZNF610 PRR12 PIH1D1 SNORD35A SNORD35B ALDH16A1 NOP53-AS1 KDELR1 RPS11 NOP53 SNORD23
GH19H049154 1.6 Ensembl ENCODE dbSUPER 13.9 +518.7 518725 5 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 YY1 SP3 SP5 TRPM4 PRR12 SEC1P GRWD1 RPS11 SNORD35A RPL13A PIH1D1 RPL18 KDELR1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SEC1P on UCSC Golden Path with GeneCards custom track

Promoters for SEC1P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000110746 -1039 3201 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A ZNF2 ZBTB7B YY1

Genomic Location for SEC1P Gene

Chromosome:
19
Start:
48,638,039 bp from pter
End:
48,682,245 bp from pter
Size:
44,207 bases
Orientation:
Plus strand

Genomic View for SEC1P Gene

Genes around SEC1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEC1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEC1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEC1P Gene

Proteins for SEC1P Gene

Post-translational modifications for SEC1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEC1P Gene

Domains & Families for SEC1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEC1P Gene

Function for SEC1P Gene

Phenotypes From GWAS Catalog for SEC1P Gene

Phenotypes for SEC1P Gene

genes like me logo Genes that share phenotypes with SEC1P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEC1P Gene

Localization for SEC1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEC1P Gene

Pathways & Interactions for SEC1P Gene

SuperPathways for SEC1P Gene

No Data Available

Interacting Proteins for SEC1P Gene

Gene Ontology (GO) - Biological Process for SEC1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEC1P Gene

Drugs & Compounds for SEC1P Gene

No Compound Related Data Available

Transcripts for SEC1P Gene

mRNA/cDNA for SEC1P Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SEC1P Gene

Secretory blood group 1, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SEC1P Gene

No ASD Table

Relevant External Links for SEC1P Gene

GeneLoc Exon Structure for
SEC1P
ECgene alternative splicing isoforms for
SEC1P

Expression for SEC1P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SEC1P Gene

mRNA differential expression in normal tissues according to GTEx for SEC1P Gene

This gene is overexpressed in Testis (x14.6).

NURSA nuclear receptor signaling pathways regulating expression of SEC1P Gene:

SEC1P

SOURCE GeneReport for Unigene cluster for SEC1P Gene:

Hs.443160
genes like me logo Genes that share expression patterns with SEC1P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEC1P Gene

Orthologs for SEC1P Gene

Evolution for SEC1P Gene

ENSEMBL:
Gene Tree for SEC1P (if available)
TreeFam:
Gene Tree for SEC1P (if available)

No data available for Orthologs for SEC1P Gene

Paralogs for SEC1P Gene

No data available for Paralogs for SEC1P Gene

Variants for SEC1P Gene

Sequence variations from dbSNP and Humsavar for SEC1P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000063861 -- 48,665,096(+) TTTTT(G/T)TATTT intron-variant
rs1000188827 -- 48,636,088(+) ATCCA(G/T)AGAAA intron-variant, upstream-variant-2KB
rs1000296980 -- 48,644,083(+) CAAGA(G/T)CAAAA intron-variant
rs1000345943 -- 48,675,609(+) GCGGT(A/G)CCCAC intron-variant, nc-transcript-variant
rs1000364775 -- 48,641,437(+) AGCAA(A/T)AAACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SEC1P Gene

Variant ID Type Subtype PubMed ID
dgv3617n100 CNV gain 25217958
esv2664951 CNV deletion 23128226
esv2718679 CNV deletion 23290073
esv2718680 CNV deletion 23290073
esv2718681 CNV deletion 23290073
esv3644596 CNV loss 21293372
nsv458719 CNV loss 19166990
nsv521477 CNV loss 19592680
nsv579904 CNV loss 21841781
nsv954676 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Relevant External Links for SEC1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEC1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEC1P Gene

Disorders for SEC1P Gene

Relevant External Links for SEC1P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SEC1P

No disorders were found for SEC1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEC1P Gene

Publications for SEC1P Gene

  1. Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China. (PMID: 24941225) Liang Y … Peng T (PloS one 2014) 3 60
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3 60
  3. Sec1-FUT2-Sec1 hybrid allele generated by interlocus gene conversion. (PMID: 18067503) Soejima M … Koda Y (Transfusion 2008) 3 60
  4. Evolution of alpha 2-fucosyltransferase genes in primates: relation between an intronic Alu-Y element and red cell expression of ABH antigens. (PMID: 10723735) Apoil PA … Blancher A (Molecular biology and evolution 2000) 3 60
  5. Structure and expression of the gene encoding secretor-type galactoside 2-alpha-L-fucosyltransferase (FUT2). (PMID: 9219535) Koda Y … Kimura H (European journal of biochemistry 1997) 3 60

Products for SEC1P Gene

Sources for SEC1P Gene

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