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Aliases for SDSL Gene

Aliases for SDSL Gene

  • Serine Dehydratase Like 2 3
  • L-Serine Dehydratase/L-Threonine Deaminase 3 4
  • L-Threonine Dehydratase 3 4
  • Serine Dehydratase-Like 2 5
  • Serine Dehydratase 2 3 4
  • L-Serine Deaminase 3 4
  • SDH 2 3 4
  • TDH 3 4
  • Serine Dehydratase Related Sequence 1 3
  • EC 4.3.1.19 4
  • EC 4.3.1.17 4
  • SDS-RS1 3
  • CSDH 3

External Ids for SDSL Gene

Previous GeneCards Identifiers for SDSL Gene

  • GC12P112273
  • GC12P112322
  • GC12P113860
  • GC12P110871

Summaries for SDSL Gene

GeneCards Summary for SDSL Gene

SDSL (Serine Dehydratase Like) is a Protein Coding gene. Among its related pathways are Sulfur amino acid metabolism and Carbon metabolism. GO annotations related to this gene include pyridoxal phosphate binding and L-threonine ammonia-lyase activity. An important paralog of this gene is SDS.

UniProtKB/Swiss-Prot for SDSL Gene

  • Has low serine dehydratase and threonine dehydratase activity.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDSL Gene

Genomics for SDSL Gene

Regulatory Elements for SDSL Gene

Enhancers for SDSL Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SDSL on UCSC Golden Path with GeneCards custom track

Promoters for SDSL Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SDSL on UCSC Golden Path with GeneCards custom track

Genomic Location for SDSL Gene

Chromosome:
12
Start:
113,422,237 bp from pter
End:
113,438,277 bp from pter
Size:
16,041 bases
Orientation:
Plus strand

Genomic View for SDSL Gene

Genes around SDSL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDSL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDSL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDSL Gene

Proteins for SDSL Gene

  • Protein details for SDSL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96GA7-SDSL_HUMAN
    Recommended name:
    Serine dehydratase-like
    Protein Accession:
    Q96GA7

    Protein attributes for SDSL Gene

    Size:
    329 amino acids
    Molecular mass:
    34674 Da
    Cofactor:
    Name=pyridoxal 5-phosphate; Xref=ChEBI:CHEBI:597326;
    Quaternary structure:
    • Homodimer.

    Three dimensional structures from OCA and Proteopedia for SDSL Gene

neXtProt entry for SDSL Gene

Proteomics data for SDSL Gene at MOPED

Post-translational modifications for SDSL Gene

  • Ubiquitination at Lys 227
  • Modification sites at PhosphoSitePlus

Other Protein References for SDSL Gene

No data available for DME Specific Peptides for SDSL Gene

Domains & Families for SDSL Gene

Suggested Antigen Peptide Sequences for SDSL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96GA7

UniProtKB/Swiss-Prot:

SDSL_HUMAN :
  • Belongs to the serine/threonine dehydratase family.
Family:
  • Belongs to the serine/threonine dehydratase family.
genes like me logo Genes that share domains with SDSL: view

No data available for Gene Families for SDSL Gene

Function for SDSL Gene

Molecular function for SDSL Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=30 mM for serine; KM=7 mM for threonine;
UniProtKB/Swiss-Prot CatalyticActivity:
L-serine = pyruvate + NH(3).
UniProtKB/Swiss-Prot CatalyticActivity:
L-threonine = 2-oxobutanoate + NH(3).
UniProtKB/Swiss-Prot Function:
Has low serine dehydratase and threonine dehydratase activity.

Enzyme Numbers (IUBMB) for SDSL Gene

Gene Ontology (GO) - Molecular Function for SDSL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003941 L-serine ammonia-lyase activity IEA --
genes like me logo Genes that share ontologies with SDSL: view
genes like me logo Genes that share phenotypes with SDSL: view

Animal Model Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDSL Gene

Localization for SDSL Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SDSL Gene COMPARTMENTS Subcellular localization image for SDSL gene
Compartment Confidence
extracellular 5
cytosol 4
mitochondrion 2
cytoskeleton 1
endoplasmic reticulum 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for SDSL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with SDSL: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for SDSL Gene

Pathways & Interactions for SDSL Gene

genes like me logo Genes that share pathways with SDSL: view

Gene Ontology (GO) - Biological Process for SDSL Gene

None

No data available for SIGNOR curated interactions for SDSL Gene

Drugs & Compounds for SDSL Gene

(5) Drugs for SDSL Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
L-Serine Approved Nutra Full agonist, Agonist 0
L-Threonine Approved Nutra 0
Pyruvic acid Approved Nutra 0
2-Ketobutyric acid Experimental Pharma 0
Pyridoxal Phosphate Nutra Target, cofactor 14

(1) Additional Compounds for SDSL Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Ammonia
  • Ammonia anhydrous
  • Ammonia inhalant
  • Ammonia solution strong [usan]
  • Ammonia water
  • Ammoniak
7664-41-7
genes like me logo Genes that share compounds with SDSL: view

Transcripts for SDSL Gene

Unigene Clusters for SDSL Gene

Serine dehydratase-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SDSL Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b
SP1: - -
SP2: - - -
SP3: - - - -
SP4: - -
SP5:
SP6: -

Relevant External Links for SDSL Gene

GeneLoc Exon Structure for
SDSL
ECgene alternative splicing isoforms for
SDSL

Expression for SDSL Gene

mRNA expression in normal human tissues for SDSL Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SDSL Gene

This gene is overexpressed in Liver (x11.6).

Protein differential expression in normal tissues from HIPED for SDSL Gene

This gene is overexpressed in Liver (10.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SDSL Gene



SOURCE GeneReport for Unigene cluster for SDSL Gene Hs.337594

genes like me logo Genes that share expression patterns with SDSL: view

Protein tissue co-expression partners for SDSL Gene

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for SDSL Gene

Orthologs for SDSL Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SDSL Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SDSL 35
  • 84.65 (n)
  • 83.23 (a)
SDSL 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SDSL 35
  • 84.45 (n)
  • 83.54 (a)
SDSL 36
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sdsl 35
  • 81.14 (n)
  • 81.04 (a)
Sdsl 16
Sdsl 36
  • 81 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SDSL 35
  • 99.19 (n)
  • 99.09 (a)
SDSL 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sdsl 35
  • 81.19 (n)
  • 81.6 (a)
oppossum
(Monodelphis domestica)
Mammalia SDSL 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SDSL 36
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves SDSL 35
  • 69.93 (n)
  • 65.93 (a)
SDSL 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SDSL 36
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sdsl 35
  • 63.85 (n)
  • 60.62 (a)
African clawed frog
(Xenopus laevis)
Amphibia MGC68790 35
zebrafish
(Danio rerio)
Actinopterygii LOC563642 35
  • 58.84 (n)
  • 57.14 (a)
SDSL 36
  • 54 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5154 35
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C00440g 35
  • 42.65 (n)
  • 35.86 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes CHA1 35
  • 44.3 (n)
  • 35.22 (a)
CHA1 36
  • 30 (a)
OneToMany
CHA1 38
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 45 (a)
OneToMany
Species with no ortholog for SDSL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SDSL Gene

ENSEMBL:
Gene Tree for SDSL (if available)
TreeFam:
Gene Tree for SDSL (if available)

Paralogs for SDSL Gene

Paralogs for SDSL Gene

(1) SIMAP similar genes for SDSL Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with SDSL: view

Variants for SDSL Gene

Sequence variations from dbSNP and Humsavar for SDSL Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs7295347 -- 113,422,357(+) GAGGG(A/G)CCAAG upstream-variant-2KB, utr-variant-5-prime
rs7298872 -- 113,422,616(+) GCGTG(G/T)TCTAG intron-variant, utr-variant-5-prime
rs7299137 -- 113,422,829(+) GGCTT(C/T)GGGGA intron-variant, utr-variant-5-prime
rs12816308 -- 113,429,896(+) TTTCT(G/T)CCCTT intron-variant
rs12817952 -- 113,430,906(+) CTAAA(A/C)ATAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SDSL Gene

Variant ID Type Subtype PubMed ID
nsv519540 CNV Gain+Loss 19592680

Variation tolerance for SDSL Gene

Residual Variation Intolerance Score: 78% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.46; 64.19% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SDSL Gene

Disorders for SDSL Gene

Relevant External Links for SDSL

Genetic Association Database (GAD)
SDSL
Human Genome Epidemiology (HuGE) Navigator
SDSL
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SDSL

No disorders were found for SDSL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDSL Gene

Publications for SDSL Gene

  1. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 48 67
  2. Enzymatic and biochemical properties of a novel human serine dehydratase isoform. (PMID: 16580895) Ogawa H. … Kobayashi M. (Biochim. Biophys. Acta 2006) 2 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  5. Next-generation sequencing to generate interactome datasets. (PMID: 21516116) Yu H. … Vidal M. (Nat. Methods 2011) 3

Products for SDSL Gene

Sources for SDSL Gene

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