SDR16C6P Gene
pseudogene GIFtS: 18
GCID: GC08M057286
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Short Chain Dehydrogenase/Reductase Family 16C, Member 6,...(Previous names: short chain dehydrogenase/reductase family 16C, member 6)
(Previous symbol: SDR16C6)
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Aliases
for SDR16C6P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
10fRNAdb,
12H-InvDB,
13NCBI,
14NONCODE,
and/or 15RNAdb)
About This Section
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| Aliases |
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Short Chain Dehydrogenase/Reductase Family 16C, Member 6,
Pseudogene1 2 | | SDR16C61 2 | | Short Chain Dehydrogenase/Reductase Family 16C, Member 61 |
Export aliases for SDR16C6P gene to outside databases |
Summaries
for SDR16C6P gene(According to Entrez Gene,
GeneCards,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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GeneCards Summary for SDR16C6P Gene:
SDR16C6P (short chain dehydrogenase/reductase family 16C, member 6, pseudogene) is a pseudogene. Diseases associated with SDR16C6P include obesity.
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Genomic Views
for SDR16C6P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 75),
Regulatory elements and Epigenetics data according to
QIAGEN, and/or
SwitchGear Genomics)
About This Section
TryGeneCards Plus | RefSeq DNA sequence:- NC_000008.11 NC_018919.2 NT_008183.20
Regulatory elements:
 Search for regulatory transcription factor binding sites for SDR16C6P
Other transcription factors
Search Chromatin IP Primers for SDR16C6P
Epigenetics:
| | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SDR16C6P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 8q12.1 Ensembl cytogenetic band: 8q12.1 HGNC cytogenetic band: 8q12.1SDR16C6P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08M057286: view genomic region
(about GC identifiers)
Start:
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57,285,623 bp from pter |
End:
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57,307,924 bp from pter |
Size:
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22,302 bases |
Orientation:
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minus strand |
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Proteins
for SDR16C6P gene
(According to
1UniProtKB,
HORDE,
2neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to PhosphoSitePlus,
Specific Peptides from DME,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Cloud-Clone Corp.,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Cloud-Clone Corp.,
Antibodies by
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
LSBio,
Abcam, and/or
Cloud-Clone Corp.)
About This Section
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UniProtKB: --
|
Domains /
Families
for SDR16C6P gene(According to HGNC, IUPHAR, InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
TryGeneCards Plus | HGNC Gene Families:
SDRC3: Short chain dehydrogenase/reductase superfamily / Classical SDR fold cluster 3
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Function
for SDR16C6P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
genOway,
transcription factor targeting from QIAGEN
and/or HOMER,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
SwitchGear Genomics,
Gene Editing from DNA2.0,
Clones from OriGene,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
ESI BIO,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Animal Models:
Inhib. RNA
Products: |  | OriGene RNAi products in human, mouse, rat for SDR16C6P
| | | Predesigned siRNA for gene silencing in human, mouse, rat SDR16C6P |
Cell Line
Products: |  | GenScript Custom overexpressing Cell Line Services for SDR16C6P | |  | Browse ESI BIO Cell Lines and PureStem Progenitors for SDR16C6P  | In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SDR16C6P |
Localization
for SDR16C6P gene
(According to UniProtKB, COMPARTMENTS Subcellular localization database,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Pathways & Interactions
for SDR16C6P gene
(SuperPaths according to PathCards,
Pathways according to
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Sino Biological,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
QIAGEN,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene).
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Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SDR16C6P
Interactions:
Search GeneGlobe Interaction Network for SDR16C6P
|
Drugs & Compounds
for SDR16C6P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience,
ApexBio,
HMDB,
BitterDB, and/or
Novoseek,
Ligands according to IUPHAR,
and Drugs according to DrugBank,
Enzo Life Sciences, and/or
PharmGKB)
About This Section
TryGeneCards Plus |  Browse compounds at ApexBio
 Browse Tocris compounds for SDR16C6P
|
Transcripts
for SDR16C6P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
Conferences by KenesGroup,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
SwitchGear Genomics,
Tagged/untagged cDNA clones from
OriGene,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene, and/or
QIAGEN
)
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REFSEQ mRNAs for SDR16C6P gene: NM_001145251.1 Unigene Cluster for SDR16C6P: Short chain dehydrogenase/reductase family 16C, member 6, pseudogene Hs.632065 Unigene Representative Sequence: XR_1089062 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000524136 ENST00000517787
Inhib. RNA
Products: | | OriGene RNAi products in human, mouse, rat for SDR16C6P
| |
| | Predesigned siRNA for gene silencing in human, mouse, rat SDR16C6P |
Additional mRNA sequence: XR_108906.1 XR_133492.1 XR_171732.1 Selected AceView cDNA sequences (see all 103): AI879200 BI826107 BM722048 BX281917 BI496610 AI459701 AA431992 BM666153 AA625695 BG719673 BI601525 BG700903 BE972335 BG772331 AI962195 BG718142 BF477589 AI799925 BG708804 BI598403 CA412689 CA413198 BI600106 AA244405
GeneLoc Exon Structure
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Expression
for SDR16C6P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
Protein expression images according to data from SPIRE 1MOPED,
2PaxDb, and 3MaxQB,
plus additional links to
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
QIAGEN,
Primers from
OriGene, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
TryGeneCards Plus | SDR16C6P expression in normal human tissues
(normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCTTCTTTCA
About this image SDR16C6P Protein expression data from MOPED1, PaxDb2 and
MaxQB3:  About this image
SOURCE GeneReport for Unigene cluster: Hs.632065
Custom PCR Arrays for SDR16C6P
Primer
Products: | | OriGene qSTAR qPCR primer pairs in human, mouse for SDR16C6P
| | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat SDR16C6P | | | QuantiTect SYBR Green Assays in human, mouse, rat SDR16C6P | | | Search QuantiFast Probe-based Assays in human, mouse, rat SDR16C6P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SDR16C6P |
Orthologs
for SDR16C6P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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This gene was present in the common ancestor of human and mouse.
Orthologs for SDR16C6P gene from 1 species (see representative species ) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Sdr16c65 |
short chain dehydrogenase/reductase family 16C, member more |
-- |
|
4 (2.27 cM) 4055931 |
ENSEMBL Gene Tree for SDR16C6P (if available)
TreeFam Gene Tree for SDR16C6P (if available) |
Paralogs
for SDR16C6P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
TryGeneCards Plus | -- |
Genomic Variants
for SDR16C6P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
4UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD), the Human Cytochrome P450 Allele
Nomenclature Database, and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 8 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for SDR16C6P (57285623 - 57307924 bp)
Structural Variations
Database of Genomic Variants (DGV) variations for SDR16C6P: --
| | Site Specific Mutation Identification with PCR Assays |
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Disorders
/ Diseases
for SDR16C6P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Conferences by KenesGroup,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
TryGeneCards Plus | 1  disease for SDR16C6P: About MalaCardsobesity
SDR16C6P for disorders About GeneDecksing
Export disorders for SDR16C6P gene to outside databases
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Publications
for SDR16C6P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
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PubMed articles for SDR16C6P gene integrated from 10 sources:
(articles sorted by number of sources associating them with SDR16C6P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. (PubMed id 19027726)1, 3 Persson B.... Oppermann U. (Chem. Biol. Interact. 2009)
- Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)1 Comuzzie A.G....Butte N.F. (PLoS ONE 2012)
- DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)1 Nusbaum C....Lander E.S. (Nature 2006)
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External Searches for SDR16C6P gene (in PubMed,
OMIM, and NCBI Bookshelf)
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Genome Databases showing SDR16C6P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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|
Other Databases showing SDR16C6P gene
(According to HUGE)
About This Section
TryGeneCards Plus | -- |
Specialized Databases showing SDR16C6P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
About This Section
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| Name | Description |
| PharmGKB entry for SDR16C6P | Pharmacogenomics, SNPs, Pathways |
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| | |
About This Section
TryGeneCards Plus | Patent Information for SDR16C6P gene:
Search GeneIP for patents involving SDR16C6P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for SDR16C6P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or
ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory,
genOway)
About This Section
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|  | Block miRNA regulation of human, mouse, rat SDR16C6P using miScript Target Protectors | | SeqTarget long-range PCR primers for resequencing SDR16C6P | | | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SDR16C6P | | Predesigned siRNA for gene silencing in human, mouse, rat SDR16C6P | | | Search QuantiFast Probe-based Assays in human, mouse, rat SDR16C6P | | QuantiTect SYBR Green Assays in human, mouse, rat SDR16C6P | | | Custom PCR Arrays for SDR16C6P | | Search Chromatin IP Primers for SDR16C6P | | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat SDR16C6P | | Search GeneGlobe Interaction Network for SDR16C6P | | | Search Regulatory tfbs for SDR16C6P |
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 |  | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SDR16C6P |
| |  |  |  |  | | | Search ThermoFisher Antibodies for SDR16C6P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat SDR16C6P |
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