Aliases for SDR16C6P Gene
Aliases for SDR16C6P Gene
External Ids for SDR16C6P Gene
- HGNC: 35413
- Entrez Gene: 442388
- Ensembl: ENSG00000253542
Previous HGNC Symbols for SDR16C6P Gene
- SDR16C6
Previous GeneCards Identifiers for SDR16C6P Gene
- GC08M057286
Summaries for SDR16C6P Gene
GeneCards Summary for SDR16C6P Gene
SDR16C6P (Short Chain Dehydrogenase/Reductase Family 16C Member 6, Pseudogene) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDR16C6P Gene
Genomics for SDR16C6P Gene
Regulatory Element Products
Genomic Location for SDR16C6P Gene
- Chromosome:
- 8
- Start:
- 56,373,064 bp from pter
- End:
- 56,395,365 bp from pter
- Size:
- 22,302 bases
- Orientation:
- Minus strand
Genomic View for SDR16C6P Gene
Genes around SDR16C6P on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8q12.1 by Ensembl
- 8q12.1 by Entrez Gene
- 8q12.1 by HGNC
SDR16C6P Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SDR16C6P Gene
No data available for Regulatory Elements for SDR16C6P Gene
Proteins for SDR16C6P Gene
Post-translational modifications for SDR16C6P Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for SDR16C6P
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SDR16C6P
- Origene Custom Protein Services for SDR16C6P
- Search GeneTex for Proteins for SDR16C6P
No data available for DME Specific Peptides for SDR16C6P Gene
Domains & Families for SDR16C6P Gene
Gene Families for SDR16C6P Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDR16C6P Gene
Function for SDR16C6P Gene
Phenotypes for SDR16C6P Gene
- GenomeRNAi human phenotypes for SDR16C6P:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for SDR16C6P
-
- Search ViGene Biosciences for SDR16C6P
CRISPR Products
- Browse CRISPR knockouts for SDR16C6P
miRNA Products
- Search ViGene Biosciences for SDR16C6P
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for SDR16C6P
- Browse OriGene Inhibitory RNA Products For SDR16C6P
- Search ViGene Biosciences for SDR16C6P
Clone Products
- GenScript: Custom all cDNA clones Services for SDR16C6P
- VectorBuilder custom plasmid, inducible vectors for SDR16C6P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SDR16C6P
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDR16C6P Gene
Localization for SDR16C6P Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDR16C6P Gene
Transcripts for SDR16C6P Gene
mRNA/cDNA for SDR16C6P Gene
- (1) REFSEQ mRNAs :
- (3) Additional mRNA sequences :
- (103) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for SDR16C6P Gene
CRISPR Products
- Browse CRISPR knockouts for SDR16C6P
miRNA Products
- Search ViGene Biosciences for SDR16C6P
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for SDR16C6P
- Browse OriGene Inhibitory RNA Products For SDR16C6P
- Search ViGene Biosciences for SDR16C6P
Clone Products
- GenScript: Custom all cDNA clones Services for SDR16C6P
- VectorBuilder custom plasmid, inducible vectors for SDR16C6P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SDR16C6P
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Expression for SDR16C6P Gene
mRNA differential expression in normal tissues according to GTEx for SDR16C6P Gene
This gene is overexpressed in Testis (x47.6).
NURSA nuclear receptor signaling pathways regulating expression of SDR16C6P Gene:
SDR16C6PSOURCE GeneReport for Unigene cluster for SDR16C6P Gene:
Hs.632065Primer Products
-
OriGene qPCR primer pairs for SDR16C6P
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDR16C6P Gene
Orthologs for SDR16C6P Gene
No data available for Orthologs for SDR16C6P Gene
Paralogs for SDR16C6P Gene
No data available for Paralogs for SDR16C6P Gene
Variants for SDR16C6P Gene
| SNP ID | Clin | Chr 08 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000065116 | -- | 56,388,446(+) | CATTT(A/G)ACAAG | intron-variant | |
| rs1000131994 | -- | 56,374,276(+) | TCATA(A/G)CATGG | downstream-variant-500B | |
| rs1000209797 | -- | 56,379,472(+) | TGTGT(A/G)TGTCT | intron-variant | |
| rs1000260754 | -- | 56,379,766(+) | TCTAC(G/T)TTCTT | intron-variant | |
| rs1000501199 | -- | 56,391,250(+) | CAAGC(G/T)CTGAT | upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv3827n106 | CNV | deletion | 24896259 |
| esv2673320 | CNV | deletion | 23128226 |
| esv2737025 | CNV | deletion | 23290073 |
| esv2737026 | CNV | deletion | 23290073 |
| esv3543531 | CNV | deletion | 23714750 |
| esv4780 | CNV | loss | 18987735 |
| nsv1077047 | CNV | deletion | 25765185 |
| nsv1135708 | CNV | deletion | 24896259 |
| nsv397753 | CNV | deletion | 16902084 |
Relevant External Links for SDR16C6P Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SDR16C6P
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDR16C6P Gene
Disorders for SDR16C6P Gene
Relevant External Links for SDR16C6P
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- SDR16C6P
No disorders were found for SDR16C6P Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDR16C6P Gene
Publications for SDR16C6P Gene
- The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. (PMID: 19027726) Persson B. … Oppermann U. (Chem. Biol. Interact. 2009) 2 3 64
- Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
- DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 3 64
Products for SDR16C6P Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
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- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SDR16C6P
- Origene Custom Protein Services for SDR16C6P
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for SDR16C6P
- Browse OriGene Inhibitory RNA Products For SDR16C6P
- OriGene qPCR primer pairs for SDR16C6P
- Browse CRISPR knockouts for SDR16C6P
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SDR16C6P
- GenScript: Custom all cDNA clones Services for SDR16C6P
- GenScript Custom Purified and Recombinant Proteins Services for SDR16C6P
- GenScript Custom Assay Services for SDR16C6P
- GenScript Custom overexpressing Cell Line Services for SDR16C6P
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- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
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- Browse Sino Biological cDNA Clones
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- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Search GeneTex for Antibodies for SDR16C6P
- Search GeneTex for Proteins for SDR16C6P
- Search ViGene Biosciences for SDR16C6P
- Cyagen custom Knockout/knockin (KOKI) mouse models for SDR16C6P
- VectorBuilder custom plasmid, inducible vectors for SDR16C6P
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SDR16C6P
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for SDR16C6P Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer