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SDR16C6P Gene(Pseudogene)

Short Chain Dehydrogenase/Reductase Family 16C Member 6, Pseudogene

GCID:
GC08M056373
GIFtS:
19
Genes Participants
UDN Logo

Aliases for SDR16C6P Gene

Aliases for SDR16C6P Gene

  • Short Chain Dehydrogenase/Reductase Family 16C Member 6, Pseudogene 2 3
  • Short Chain Dehydrogenase/Reductase Family 16C, Member 6, Pseudogene 2 5
  • Short Chain Dehydrogenase/Reductase Family 16C, Member 6 2
  • SDR16C6 3

External Ids for SDR16C6P Gene

Previous HGNC Symbols for SDR16C6P Gene

  • SDR16C6

Previous GeneCards Identifiers for SDR16C6P Gene

  • GC08M057286

Summaries for SDR16C6P Gene

GeneCards Summary for SDR16C6P Gene

SDR16C6P (Short Chain Dehydrogenase/Reductase Family 16C Member 6, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDR16C6P Gene

Genomics for SDR16C6P Gene

Products:

  1. Regulatory Element

Genomic Location for SDR16C6P Gene

Chromosome:
8
Start:
56,373,064 bp from pter
End:
56,395,365 bp from pter
Size:
22,302 bases
Orientation:
Minus strand

Genomic View for SDR16C6P Gene

Genes around SDR16C6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDR16C6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDR16C6P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SDR16C6P Gene

No data available for Regulatory Elements for SDR16C6P Gene

Proteins for SDR16C6P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SDR16C6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDR16C6P Gene

Domains & Families for SDR16C6P Gene

Gene Families for SDR16C6P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SDR16C6P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDR16C6P Gene

Function for SDR16C6P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for SDR16C6P Gene

GenomeRNAi human phenotypes for SDR16C6P:
genes like me logo Genes that share phenotypes with SDR16C6P: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDR16C6P Gene

Localization for SDR16C6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDR16C6P Gene

Pathways & Interactions for SDR16C6P Gene

SuperPathways for SDR16C6P Gene

PathCards logo More details on SuperPathways for SDR16C6P
No Data Available

Interacting Proteins for SDR16C6P Gene

Gene Ontology (GO) - Biological Process for SDR16C6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDR16C6P Gene

Drugs & Compounds for SDR16C6P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SDR16C6P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for SDR16C6P Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(103) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SDR16C6P Gene

Short chain dehydrogenase/reductase family 16C, member 6, pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SDR16C6P Gene

No ASD Table

Relevant External Links for SDR16C6P Gene

GeneLoc Exon Structure for
SDR16C6P
ECgene alternative splicing isoforms for
SDR16C6P

Expression for SDR16C6P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SDR16C6P Gene

mRNA expression in normal human tissues for SDR16C6P Gene
mRNA expression by GTEx for SDR16C6P Gene

mRNA differential expression in normal tissues according to GTEx for SDR16C6P Gene

This gene is overexpressed in Testis (x47.6).

NURSA nuclear receptor signaling pathways regulating expression of SDR16C6P Gene:

SDR16C6P

SOURCE GeneReport for Unigene cluster for SDR16C6P Gene:

Hs.632065
genes like me logo Genes that share expression patterns with SDR16C6P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SDR16C6P Gene

Orthologs for SDR16C6P Gene

Evolution for SDR16C6P Gene

ENSEMBL:
Gene Tree for SDR16C6P (if available)
TreeFam:
Gene Tree for SDR16C6P (if available)

No data available for Orthologs for SDR16C6P Gene

Paralogs for SDR16C6P Gene

No data available for Paralogs for SDR16C6P Gene

Variants for SDR16C6P Gene

Sequence variations from dbSNP and Humsavar for SDR16C6P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10087043 -- 56,390,870(+) CTCAG(A/G)ACGGC upstream-variant-2KB
rs10097192 -- 56,384,195(+) GGTCT(C/T)GAACT intron-variant
rs10097863 -- 56,385,434(+) TTTTT(G/T)TGTGT intron-variant
rs10107582 -- 56,392,605(+) AAGAA(A/G)GAAAG upstream-variant-2KB
rs10107583 -- 56,392,606(+) AGAAG(G/T)AAAGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SDR16C6P Gene

Variant ID Type Subtype PubMed ID
nsv397753 CNV deletion 16902084
nsv1135708 CNV deletion 24896259
nsv1077047 CNV deletion 25765185
esv4780 CNV loss 18987735
esv3543531 CNV deletion 23714750
esv2737026 CNV deletion 23290073
esv2737025 CNV deletion 23290073
esv2673320 CNV deletion 23128226
dgv3827n106 CNV deletion 24896259

Relevant External Links for SDR16C6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDR16C6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDR16C6P Gene

Disorders for SDR16C6P Gene

Relevant External Links for SDR16C6P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SDR16C6P

No disorders were found for SDR16C6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDR16C6P Gene

Publications for SDR16C6P Gene

  1. The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. (PMID: 19027726) Persson B. … Oppermann U. (Chem. Biol. Interact. 2009) 2 3 64
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  3. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 3 64

Products for SDR16C6P Gene

Sources for SDR16C6P Gene

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