SDR16C6P Gene
pseudogene GIFtS: 18
GCID: GC08M057286
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Short Chain Dehydrogenase/Reductase Family 16C, Member 6,...(Previous names: short chain dehydrogenase/reductase family 16C, member 6)
(Previous symbol: SDR16C6)
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Aliases
for SDR16C6P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
10fRNAdb,
12H-InvDB,
13NCBI,
14NONCODE,
and/or 15RNAdb)
About This Section
|
| Aliases |
|---|
Short Chain Dehydrogenase/Reductase Family 16C, Member 6,
Pseudogene1 2 | | SDR16C61 2 | | Short Chain Dehydrogenase/Reductase Family 16C, Member 61 |
Export aliases for SDR16C6P gene to outside databases |
Summaries
for SDR16C6P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
GeneCards Summary for SDR16C6P Gene: 
SDR16C6P (short chain dehydrogenase/reductase family 16C, member 6, pseudogene) is a pseudogene.
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Genomic Views
for SDR16C6P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 73),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000008.10 NC_018919.2 NT_008183.19
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for SDR16C6P
Other transcription factors
Search SABiosciences Chromatin IP Primers for SDR16C6P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SDR16C6P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 8q12.1 Ensembl cytogenetic band: 8q12.1 HGNC cytogenetic band: 8q12.1SDR16C6P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08M057286: view genomic region
(about GC identifiers)
Start:
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57,285,623 bp from pter |
End:
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57,307,924 bp from pter |
Size:
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22,302 bases |
Orientation:
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minus strand |
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Proteins
for SDR16C6P gene
(According to
UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE 1MOPED,
2PaxDb, and 3MAXQB
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Cloud-Clone Corp.,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Cloud-Clone Corp.,
Ontologies according to Gene
Ontology Consortium 01 Oct 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
LSBio,
Abcam, and/or
Cloud-Clone Corp.)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for SDR16C6P gene(According to HGNC, IUPHAR, InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| HGNC Gene Families:
SDRC3: Short chain dehydrogenase/reductase superfamily / Classical SDR fold cluster 3
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Function
for SDR16C6P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
genOway,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
Vector BioLabs,
and Sirion Biotech,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Oct 2013 via
Entrez Gene.)
About This Section
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Animal Models:
Cell Line
Products: |  | GenScript Custom overexpressing Cell Line Services for SDR16C6P | |  | Search LifeMap BioReagents cell lines for SDR16C6P | In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SDR16C6P |
Pathways & Interactions
for SDR16C6P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Sino Biological,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Oct 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SDR16C6P
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Drugs & Compounds
for SDR16C6P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek,
Ligands according to IUPHAR,
and Drugs according to DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
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 Browse Tocris compounds for SDR16C6P
Search CenterWatch for drugs/clinical trials and news about SDR16C6P
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Transcripts
for SDR16C6P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
Conferences by KenesGroup,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Sirion Biotech,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for SDR16C6P gene: NM_001145251.1 Unigene Cluster for SDR16C6P: Short chain dehydrogenase/reductase family 16C, member 6, pseudogene Hs.632065 Unigene Representative Sequence: XR_1089062 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000524136 ENST00000517787
Additional mRNA sequence: XR_108906.1 XR_133492.1 XR_171732.1 24/103 AceView cDNA sequences (see all 103): BI496610 BM722048 BM666153 BX281917 AA431992 AI459701 BI826107 AA625695 AI879200 AI971209 BI913625 CA412456 BC032505 CA414655 BI600106 BI825991 BI669236 BI601525 CA424700 CA412222 CR541828 CA412860 BI457700 CA412373
GeneLoc Exon Structure
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Expression
for SDR16C6P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| SDR16C6P expression in normal human tissues
(normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCTTCTTTCA
About this image
SOURCE GeneReport for Unigene cluster: Hs.632065
SABiosciences Custom PCR Arrays for SDR16C6P
Primer
Products: |  | OriGene qSTAR qPCR primer pairs in human, mouse for SDR16C6P
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat SDR16C6P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SDR16C6P | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SDR16C6P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SDR16C6P |
Orthologs
for SDR16C6P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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This gene was present in the common ancestor of human and mouse.
Orthologs for SDR16C6P gene from 1 species (see representative species ) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Sdr16c65 |
short chain dehydrogenase/reductase family 16C, member more |
-- |
|
4 (2.27 cM) 4055931 |
ENSEMBL Gene Tree for SDR16C6P (if available)
TreeFam Gene Tree for SDR16C6P (if available) |
Paralogs
for SDR16C6P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for SDR16C6P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
4UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 8 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for SDR16C6P (57285623 - 57307924 bp)
Structural Variations
Database of Genomic Variants (DGV) variations for SDR16C6P: --
| | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for SDR16C6P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Conferences by KenesGroup,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for SDR16C6P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for SDR16C6P gene integrated from 9 sources:
(articles sorted by number of sources associating them with SDR16C6P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. (PubMed id 19027726)1, 3 Persson B.... Oppermann U. (2009)
- Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)1 Comuzzie A.G....Butte N.F. (2012)
- DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)1 Nusbaum C....Lander E.S. (2006)
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External Searches for SDR16C6P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing SDR16C6P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing SDR16C6P gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SDR16C6P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for SDR16C6P | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for SDR16C6P gene:
Search GeneIP for patents involving SDR16C6P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for SDR16C6P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory,
genOway)
About This Section
|
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SDR16C6P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SDR16C6P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SDR16C6P | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SDR16C6P | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SDR16C6P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SDR16C6P |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SDR16C6P |
|  |  |  |  | | | | Search ThermoFisher Antibodies for SDR16C6P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat SDR16C6P |
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