Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SDHDP6 Gene

Aliases for SDHDP6 Gene

  • Succinate Dehydrogenase Complex Subunit D Pseudogene 6 2 3 5
  • Succinate Dehydrogenase Complex, Subunit D, Integral Membrane Protein Pseudogene 6 2
  • Succinate Dehydrogenase Complex Subunit D, Integral Membrane Protein Pseudogene 6 2

External Ids for SDHDP6 Gene

Previous GeneCards Identifiers for SDHDP6 Gene

  • GC01U990302
  • GC01M025365
  • GC01M025492
  • GC01M025619
  • GC01M023874

Summaries for SDHDP6 Gene

GeneCards Summary for SDHDP6 Gene

SDHDP6 (Succinate Dehydrogenase Complex Subunit D Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHDP6 Gene

Genomics for SDHDP6 Gene

Regulatory Elements for SDHDP6 Gene

Enhancers for SDHDP6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F025236 1.5 FANTOM5 Ensembl ENCODE 5.6 +55.7 55672 5.6 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143 ZNF207 SYF2 SDHDP6 RHD ENSG00000261349 EXTL1 TMEM57 ENSG00000272432 GC01P025232
GH01F025559 0.8 Ensembl ENCODE 5.1 -267.2 -267233 4.6 HDGF FOS REST TBX21 ZNF592 GLIS1 NBN KDM1A WT1 CTCF LDLRAP1 ENSG00000233478 ENSG00000225643 SDHDP6 TMEM50A
GH01F025267 0.7 ENCODE 4.8 +26.8 26764 1.3 PKNOX1 ZBTB2 NRF1 MNT YBX1 ZKSCAN1 ZNF366 POLR2A FOXK2 PBX2 RHCE SDHDP6 ENSG00000261349 RHD
GH01F025017 1.5 FANTOM5 Ensembl ENCODE 4.6 +266.9 266869 20.8 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 SIN3A YBX1 FEZF1 ZNF143 RUNX3 ENSG00000261025 ENSG00000231953 ENSG00000207302 RPL39P7 SYF2 LOC105376878 RSRP1 RHCE SDHDP6
GH01F024969 0.9 FANTOM5 Ensembl ENCODE 4.4 +323.6 323569 4.2 HDGF CTCF PKNOX1 TSC22D4 SIN3A GLI4 UBTF ZNF48 RAD21 ZIC2 ENSG00000261025 ENSG00000231953 ENSG00000207302 RPL39P7 SDHDP6 RSRP1 GC01M024930
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SDHDP6 on UCSC Golden Path with GeneCards custom track

Genomic Location for SDHDP6 Gene

Chromosome:
1
Start:
25,293,358 bp from pter
End:
25,294,669 bp from pter
Size:
1,312 bases
Orientation:
Minus strand

Genomic View for SDHDP6 Gene

Genes around SDHDP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDHDP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDHDP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDHDP6 Gene

Proteins for SDHDP6 Gene

Post-translational modifications for SDHDP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDHDP6 Gene

Domains & Families for SDHDP6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDHDP6 Gene

Function for SDHDP6 Gene

Molecular function for SDHDP6 Gene

GENATLAS Biochemistry:
succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 6

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDHDP6 Gene

Localization for SDHDP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDHDP6 Gene

Pathways & Interactions for SDHDP6 Gene

SuperPathways for SDHDP6 Gene

No Data Available

Interacting Proteins for SDHDP6 Gene

Gene Ontology (GO) - Biological Process for SDHDP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDHDP6 Gene

Transcripts for SDHDP6 Gene

mRNA/cDNA for SDHDP6 Gene

(16) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SDHDP6 Gene

No ASD Table

Relevant External Links for SDHDP6 Gene

GeneLoc Exon Structure for
SDHDP6
ECgene alternative splicing isoforms for
SDHDP6

Expression for SDHDP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SDHDP6 Gene

mRNA differential expression in normal tissues according to GTEx for SDHDP6 Gene

This gene is overexpressed in Whole Blood (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of SDHDP6 Gene:

SDHDP6
genes like me logo Genes that share expression patterns with SDHDP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SDHDP6 Gene

Orthologs for SDHDP6 Gene

Evolution for SDHDP6 Gene

ENSEMBL:
Gene Tree for SDHDP6 (if available)
TreeFam:
Gene Tree for SDHDP6 (if available)

No data available for Orthologs for SDHDP6 Gene

Paralogs for SDHDP6 Gene

No data available for Paralogs for SDHDP6 Gene

Variants for SDHDP6 Gene

Relevant External Links for SDHDP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDHDP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SDHDP6 Gene

Disorders for SDHDP6 Gene

No disorders were found for SDHDP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SDHDP6 Gene

Publications for SDHDP6 Gene

  1. Characterization of the human SDHD gene encoding the small subunit of cytochrome b (cybS) in mitochondrial succinate-ubiquinone oxidoreductase. (PMID: 10482792) Hirawake H. … Kita K. (Biochim. Biophys. Acta 1999) 2 3 64
  2. RHCE represents the ancestral RH position, while RHD is the duplicated gene. (PMID: 11902138) Wagner F.F. … Flegel W.A. (Blood 2002) 3 64

Products for SDHDP6 Gene

Sources for SDHDP6 Gene

Content
Loading form....