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Aliases for SDHAP3 Gene

Aliases for SDHAP3 Gene

  • Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 3 2 3 5
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein Pseudogene 3 2 3
  • SDHA C-Terminal Like 2 3
  • Succinate Dehydrogenase Complex Subunit A, Flavoprotein Pseudogene 3 2
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein-Like 2
  • Similar To Succinate Dehydrogenase Flavoprotein Subunit 2
  • SDHACL 3
  • SDHAL 3

External Ids for SDHAP3 Gene

Previous HGNC Symbols for SDHAP3 Gene

  • SDHAL
  • SDHACL

Previous GeneCards Identifiers for SDHAP3 Gene

  • GC05M001628
  • GC05U901046
  • GC05M001572
  • GC05M001553
  • GC05M001570

Summaries for SDHAP3 Gene

GeneCards Summary for SDHAP3 Gene

SDHAP3 (Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHAP3 Gene

Genomics for SDHAP3 Gene

Regulatory Elements for SDHAP3 Gene

Enhancers for SDHAP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F001593 0.8 ENCODE 38.1 +0.1 91 1.4 ARID4B SIN3A GLI4 DMAP1 ZNF2 ZNF48 YY1 ZNF121 GTF3C2 GLIS2 LOC728613 SDHAP3 LOC100132773 SLC6A3 ENSG00000251532 GC05P001587
GH05F001608 0.8 Ensembl ENCODE 38.1 -13.8 -13768 0.8 HDAC1 ESRRA GFI1B BHLHE40 ZIC2 RUNX1 IKZF1 MLLT1 FOS KDM1A LOC728613 SDHAP3 SLC6A3 ENSG00000271119 PIR49996 ENSG00000248126
GH05F001597 0.2 Ensembl 38 -2.8 -2781 0.8 SDHAP3 SLC6A3 LOC728613 ENSG00000251532 ENSG00000248126 ENSG00000271119
GH05F001633 1.1 ENCODE 29.7 -39.4 -39397 1.1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 KLF13 SDHAP3 LOC728613 ENSG00000251532 GC05M001591
GH05F001653 0.2 Ensembl 26.8 -59.7 -59689 2.1 CTCF TRIM22 REST MNT ZIC2 ZBTB26 SDHAP3 LOC728613 SLC6A3 LOC100132773 ENSG00000251532 GC05M001591 PIR51678
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SDHAP3 on UCSC Golden Path with GeneCards custom track

Promoters for SDHAP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001274447 319 1800 ARID4B SIN3A GLI4 DMAP1 ZNF2 ZNF48 YY1 ZNF121 GTF3C2 GLIS2

Genomic Location for SDHAP3 Gene

Chromosome:
5
Start:
1,571,957 bp from pter
End:
1,594,620 bp from pter
Size:
22,664 bases
Orientation:
Minus strand

Genomic View for SDHAP3 Gene

Genes around SDHAP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDHAP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDHAP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDHAP3 Gene

Proteins for SDHAP3 Gene

Post-translational modifications for SDHAP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDHAP3 Gene

Domains & Families for SDHAP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDHAP3 Gene

Function for SDHAP3 Gene

Phenotypes for SDHAP3 Gene

GenomeRNAi human phenotypes for SDHAP3:
genes like me logo Genes that share phenotypes with SDHAP3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDHAP3 Gene

Localization for SDHAP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDHAP3 Gene

Pathways & Interactions for SDHAP3 Gene

SuperPathways for SDHAP3 Gene

No Data Available

Interacting Proteins for SDHAP3 Gene

Gene Ontology (GO) - Biological Process for SDHAP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDHAP3 Gene

Transcripts for SDHAP3 Gene

mRNA/cDNA for SDHAP3 Gene

(8) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SDHAP3 Gene

Succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SDHAP3 Gene

No ASD Table

Relevant External Links for SDHAP3 Gene

GeneLoc Exon Structure for
SDHAP3
ECgene alternative splicing isoforms for
SDHAP3

Expression for SDHAP3 Gene

mRNA expression in normal human tissues for SDHAP3 Gene

Protein differential expression in normal tissues from HIPED for SDHAP3 Gene

This gene is overexpressed in Brain (48.7) and Heart (20.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SDHAP3 Gene



Protein tissue co-expression partners for SDHAP3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SDHAP3 Gene:

SDHAP3

SOURCE GeneReport for Unigene cluster for SDHAP3 Gene:

Hs.379186
genes like me logo Genes that share expression patterns with SDHAP3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SDHAP3 Gene

Orthologs for SDHAP3 Gene

Evolution for SDHAP3 Gene

ENSEMBL:
Gene Tree for SDHAP3 (if available)
TreeFam:
Gene Tree for SDHAP3 (if available)

No data available for Orthologs for SDHAP3 Gene

Paralogs for SDHAP3 Gene

No data available for Paralogs for SDHAP3 Gene

Variants for SDHAP3 Gene

Sequence variations from dbSNP and Humsavar for SDHAP3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10036275 -- 1,592,217(+) CGATG(C/T)TAACT intron-variant
rs10038510 -- 1,591,882(+) CGAGC(A/G)GTGGT intron-variant
rs10038568 -- 1,592,062(+) CTAAC(A/T)GTTAA intron-variant
rs10039113 -- 1,591,773(+) TGAGA(C/T)AAGCA intron-variant
rs10039140 -- 1,591,933(+) AATAC(C/T)ATCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SDHAP3 Gene

Variant ID Type Subtype PubMed ID
dgv3199e59 CNV duplication 20981092
esv1266763 CNV insertion 17803354
esv3565364 CNV deletion 23714750
esv3603814 CNV loss 21293372
nsv10657 CNV loss 18304495
nsv1133013 OTHER inversion 24896259
nsv1147234 OTHER inversion 26484159
nsv1151023 CNV insertion 26484159
nsv509046 CNV insertion 20534489
nsv596879 CNV gain 21841781
nsv596885 CNV loss 21841781
nsv980605 CNV duplication 23825009

Relevant External Links for SDHAP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDHAP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDHAP3 Gene

Disorders for SDHAP3 Gene

Relevant External Links for SDHAP3

Genetic Association Database (GAD)
SDHAP3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SDHAP3

No disorders were found for SDHAP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDHAP3 Gene

Publications for SDHAP3 Gene

  1. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. (PMID: 25086665) Wolpin B.M. … Amundadottir L.T. (Nat. Genet. 2014) 3 64
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  3. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 46 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SDHAP3 Gene

Sources for SDHAP3 Gene

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