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Aliases for SDHAP3 Gene

Aliases for SDHAP3 Gene

  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein Pseudogene 3 2 3
  • SDHA C-Terminal Like 2 3
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein-Like 2
  • Similar To Succinate Dehydrogenase Flavoprotein Subunit 2
  • SDHACL 3
  • SDHAL 3

External Ids for SDHAP3 Gene

Previous Symbols for SDHAP3 Gene

  • SDHAL
  • SDHACL

Summaries for SDHAP3 Gene

GeneCards Summary for SDHAP3 Gene

SDHAP3 (Succinate Dehydrogenase Complex, Subunit A, Flavoprotein Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHAP3 Gene

Genomics for SDHAP3 Gene

Genomic Location for SDHAP3 Gene

Start:
1,571,957 bp from pter
End:
1,594,620 bp from pter
Size:
22,664 bases
Orientation:
Minus strand

Genomic View for SDHAP3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SDHAP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDHAP3 Gene

Regulatory Elements for SDHAP3 Gene

Proteins for SDHAP3 Gene

Post-translational modifications for SDHAP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDHAP3 Gene

Domains for SDHAP3 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SDHAP3 Gene

Function for SDHAP3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SDHAP3 Gene

Localization for SDHAP3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SDHAP3 Gene COMPARTMENTS Subcellular localization image for SDHAP3 gene
Compartment Confidence
mitochondrion 3
cytosol 2
extracellular 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for SDHAP3 Gene

Pathways for SDHAP3 Gene

SuperPathways for SDHAP3 Gene

No Data Available

Interacting Proteins for SDHAP3 Gene

Gene Ontology (GO) - Biological Process for SDHAP3 Gene

None

No data available for Pathways by source for SDHAP3 Gene

Transcripts for SDHAP3 Gene

mRNA/cDNA for SDHAP3 Gene

(8) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SDHAP3 Gene

Succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SDHAP3 Gene

No ASD Table

Relevant External Links for SDHAP3 Gene

GeneLoc Exon Structure for
SDHAP3
ECgene alternative splicing isoforms for
SDHAP3

Expression for SDHAP3 Gene

mRNA expression in normal human tissues for SDHAP3 Gene

Integrated Proteomics: protein expression from for SDHAP3 Gene

SOURCE GeneReport for Unigene cluster for SDHAP3 Gene Hs.379186

genes like me logo Genes that share expressions with SDHAP3: view

Orthologs for SDHAP3 Gene

Evolution for SDHAP3 Gene

ENSEMBL:
Gene Tree for SDHAP3 (if available)
TreeFam:
Gene Tree for SDHAP3 (if available)

No data available for Orthologs for SDHAP3 Gene

Paralogs for SDHAP3 Gene

No data available for Paralogs for SDHAP3 Gene

Variants for SDHAP3 Gene

Sequence variations from dbSNP and Humsavar for SDHAP3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs1139142 -- 1,579,400(-) CCCAG(C/T)TGCAG intron-variant
rs1139298 -- 1,583,771(-) gggaa(A/C)gcaca intron-variant
rs1139300 -- 1,583,738(-) TGTGA(C/T)GGTAT intron-variant
rs1139567 -- 1,572,241(-) CCCGT(C/T)CCCCC nc-transcript-variant
rs1139568 -- 1,572,240(-) CCGTC(C/T)CCCCA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SDHAP3 Gene

Variant ID Type Subtype PubMed ID
nsv881664 CNV Loss 21882294
dgv5918n71 CNV Loss 21882294
dgv5919n71 CNV Loss 21882294
nsv509046 CNV Insertion 20534489
nsv881648 CNV Gain 21882294
dgv5921n71 CNV Loss 21882294
nsv10657 CNV Loss 18304495
nsv881206 CNV Gain 21882294
esv1266763 CNV Insertion 17803354

Relevant External Links for SDHAP3 Gene

HapMap Linkage Disequilibrium report
SDHAP3

Disorders for SDHAP3 Gene

Relevant External Links for SDHAP3

Genetic Association Database (GAD)
SDHAP3
genes like me logo Genes that share disorders with SDHAP3: view

No data available for UniProtKB/Swiss-Prot for SDHAP3 Gene

Publications for SDHAP3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 49
  3. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 49

Products for SDHAP3 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SDHAP3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SDHAP3
    • Block miRNA regulation of SDHAP3 using miScript Target Protectors

    Sources for SDHAP3 Gene

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