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Aliases for SDHAP1 Gene

Aliases for SDHAP1 Gene

  • Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 1 2 3 5
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein Pseudogene 1 2 3
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein-Like 1 2 3
  • Succinate Dehydrogenase Complex Subunit A, Flavoprotein Pseudogene 1 2
  • SDHALP1 3
  • SDHAL1 3

External Ids for SDHAP1 Gene

Previous HGNC Symbols for SDHAP1 Gene

  • SDHAL1
  • SDHALP1

Previous GeneCards Identifiers for SDHAP1 Gene

  • GC03U901267
  • GC03M195688
  • GC03M192963

Summaries for SDHAP1 Gene

GeneCards Summary for SDHAP1 Gene

SDHAP1 (Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 1) is a Pseudogene.

Additional gene information for SDHAP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHAP1 Gene

Genomics for SDHAP1 Gene

GeneHancer (GH) Regulatory Elements for SDHAP1 Gene

Promoters and enhancers for SDHAP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I195989 Promoter/Enhancer 1.4 Ensembl ENCODE 550.8 +0.3 317 2 HDAC1 ATF1 RB1 ARNT SREBF2 ARID4B SIN3A ZBTB40 KLF5 GTF3C2 SDHAP1 MUC20 LINC00969 MUC4 GC03M195910
GH03I196316 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 66.4 -327.8 -327763 2.8 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B POLR2B E2F8 ZNF143 ZNF207 TCTEX1D2 ENSG00000272741 TM4SF19-AS1 SDHAP1 SDHAP2 UBXN7 LINC00969 RNU6ATAC24P RNF168 ENSG00000271662
GH03I196078 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 54.7 -90.7 -90664 4.4 MLX DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 MEF2D GLIS1 RCOR2 TFRC SDHAP1 SDHAP2 LINC00969 UBXN7 ACAP2 ENSG00000230732 RNU6ATAC24P MUC4 SENP5
GH03I196337 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 51 -349.1 -349082 4.4 HDGF PKNOX1 ARNT SIN3A YY1 POLR2B ZNF766 E2F8 FOS SMARCB1 TM4SF19 TM4SF19-TCTEX1D2 SDHAP1 LINC00969 UBXN7 SDHAP2 ENSG00000230732 ACAP2 ENSG00000260261 ENSG00000231443
GH03I196163 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 62.6 -174.3 -174321 2.9 HDGF ARNT ZNF493 ARID4B YBX1 DMAP1 ZNF2 TCF12 SLC30A9 POLR2B SDHAP1 SDHAP2 LINC00969 UBXN7 RNU6ATAC24P ACAP2 ENSG00000230732 RNF168 UBXN7-AS1 GC03P196177
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SDHAP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SDHAP1 Gene

Genomic Locations for SDHAP1 Gene
chr3:195,959,748-195,990,318
(GRCh38/hg38)
Size:
30,571 bases
Orientation:
Minus strand
chr3:195,686,619-195,717,189
(GRCh37/hg19)

Genomic View for SDHAP1 Gene

Genes around SDHAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDHAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDHAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDHAP1 Gene

Proteins for SDHAP1 Gene

Post-translational modifications for SDHAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDHAP1 Gene

Domains & Families for SDHAP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDHAP1 Gene

Function for SDHAP1 Gene

Phenotypes From GWAS Catalog for SDHAP1 Gene

genes like me logo Genes that share phenotypes with SDHAP1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDHAP1 Gene

Localization for SDHAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SDHAP1 Gene

Pathways & Interactions for SDHAP1 Gene

SuperPathways for SDHAP1 Gene

No Data Available

Interacting Proteins for SDHAP1 Gene

Gene Ontology (GO) - Biological Process for SDHAP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDHAP1 Gene

Drugs & Compounds for SDHAP1 Gene

No Compound Related Data Available

Transcripts for SDHAP1 Gene

mRNA/cDNA for SDHAP1 Gene

Unigene Clusters for SDHAP1 Gene

Succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SDHAP1 Gene

No ASD Table

Relevant External Links for SDHAP1 Gene

GeneLoc Exon Structure for
SDHAP1
ECgene alternative splicing isoforms for
SDHAP1

Expression for SDHAP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SDHAP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SDHAP1 Gene:

SDHAP1

SOURCE GeneReport for Unigene cluster for SDHAP1 Gene:

Hs.566872
genes like me logo Genes that share expression patterns with SDHAP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDHAP1 Gene

Orthologs for SDHAP1 Gene

Evolution for SDHAP1 Gene

ENSEMBL:
Gene Tree for SDHAP1 (if available)
TreeFam:
Gene Tree for SDHAP1 (if available)

No data available for Orthologs for SDHAP1 Gene

Paralogs for SDHAP1 Gene

No data available for Paralogs for SDHAP1 Gene

Variants for SDHAP1 Gene

Sequence variations from dbSNP and Humsavar for SDHAP1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000094484 -- 195,965,698(-) C/T intron_variant
rs1000322981 -- 195,979,900(-) A/G intron_variant
rs1000689227 -- 195,975,319(-) T/C intron_variant
rs1000737715 -- 195,964,909(-) A/C intron_variant
rs1001393230 -- 195,960,829(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SDHAP1 Gene

Variant ID Type Subtype PubMed ID
dgv1444e212 CNV loss 25503493
dgv2683n106 OTHER inversion 24896259
dgv2688n106 CNV duplication 24896259
dgv2891e59 CNV duplication 20981092
dgv2892e59 CNV duplication 20981092
dgv2893e59 CNV duplication 20981092
dgv2894e59 CNV duplication 20981092
dgv2895e59 CNV duplication 20981092
esv2664763 CNV deletion 23128226
esv2677674 CNV deletion 23128226
esv2759213 CNV gain+loss 17122850
esv27896 CNV gain+loss 19812545
esv3369057 CNV duplication 20981092
esv3384598 CNV duplication 20981092
esv3394919 CNV duplication 20981092
esv3431163 CNV duplication 20981092
esv3440897 CNV duplication 20981092
esv3563169 CNV deletion 23714750
esv3569217 CNV loss 25503493
esv3599259 CNV loss 21293372
esv3599260 CNV gain 21293372
nsv1002629 CNV gain 25217958
nsv1005193 CNV loss 25217958
nsv1006165 CNV gain 25217958
nsv1008512 CNV gain 25217958
nsv1010395 CNV gain 25217958
nsv10385 CNV loss 18304495
nsv1068315 OTHER inversion 25765185
nsv1077954 CNV duplication 25765185
nsv1117362 CNV tandem duplication 24896259
nsv1131755 CNV deletion 24896259
nsv1150001 CNV duplication 26484159
nsv428430 CNV gain+loss 18775914
nsv469518 CNV gain+loss 16826518
nsv471621 CNV gain+loss 15918152
nsv511234 CNV loss 21212237
nsv820779 CNV duplication 20802225
nsv822410 CNV loss 20364138
nsv829827 CNV gain+loss 17160897
nsv950307 CNV duplication 24416366
nsv965249 CNV duplication 23825009
nsv967107 CNV duplication 23825009
nsv979913 CNV duplication 23825009
nsv997797 CNV gain 25217958

Additional Variant Information for SDHAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDHAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDHAP1 Gene

Disorders for SDHAP1 Gene

Additional Disease Information for SDHAP1

No disorders were found for SDHAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDHAP1 Gene

Publications for SDHAP1 Gene

  1. Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations. (PMID: 22158540) Wu C … Lin D (Nature genetics 2011) 44 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SDHAP1 Gene

Sources for SDHAP1 Gene

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