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Aliases for SDHAP1 Gene

Aliases for SDHAP1 Gene

  • Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 1 2 3 5
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein Pseudogene 1 2 3
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein-Like 1 2 3
  • Succinate Dehydrogenase Complex Subunit A, Flavoprotein Pseudogene 1 2
  • SDHALP1 3
  • SDHAL1 3

External Ids for SDHAP1 Gene

Previous HGNC Symbols for SDHAP1 Gene

  • SDHAL1
  • SDHALP1

Previous GeneCards Identifiers for SDHAP1 Gene

  • GC03U901267
  • GC03M195688
  • GC03M192963

Summaries for SDHAP1 Gene

GeneCards Summary for SDHAP1 Gene

SDHAP1 (Succinate Dehydrogenase Complex Flavoprotein Subunit A Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHAP1 Gene

Genomics for SDHAP1 Gene

Regulatory Elements for SDHAP1 Gene

Enhancers for SDHAP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G196629 1.6 Ensembl ENCODE dbSUPER 4.8 -642.2 -642173 6.2 HDGF PKNOX1 SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 CBX5 ZNF143 NRROS CEP19 LINC01063 TCTEX1D2 SDHAP1 WDR53
GH03G196079 1.4 ENCODE dbSUPER 5.4 -90.7 -90664 4.5 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 SP3 MEF2D GLIS1 MUC4 ACAP2 UBXN7 MIR570 ENSG00000230732 MUC20 LINC00969 SDHAP1 LOC100131360 ENSG00000260261
GH03G196790 1.3 Ensembl ENCODE 5.1 -802.3 -802270 5.1 HDGF ATF1 FOXA2 PKNOX1 ARNT SIN3A ARID4B BRCA1 ZNF2 ZBTB7B CEP19 SENP5 NCBP2-AS1 NCBP2 MELTF-AS1 PIGX PAK2 SDHAP1 TCTEX1D2 RNU6-42P
GH03G196073 1.1 ENCODE dbSUPER 5.6 -83.1 -83097 0.2 HDAC1 CTCF PKNOX1 TAL1 TEAD4 ZBTB40 RAD21 FOSL1 POLR2A SMC3 SDHAP1 GC03P196073 TFRC
GH03G196773 1.2 Ensembl ENCODE 5.1 -784.2 -784233 1.5 HDGF FOXA2 MLX SIN3A GATA2 FOS ZNF202 SREBF1 HNF4A TEAD3 PIGX SDHAP1 RNU6-42P GC03M196785 GC03P196755
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SDHAP1 on UCSC Golden Path with GeneCards custom track

Promoters for SDHAP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164335 318 2001 FOXA2 CREB3L1 ARNT ARID4B SIN3A ZNF143 ZNF207 FOS KLF13 SP3

Genomic Location for SDHAP1 Gene

Chromosome:
3
Start:
195,959,748 bp from pter
End:
195,990,318 bp from pter
Size:
30,571 bases
Orientation:
Minus strand

Genomic View for SDHAP1 Gene

Genes around SDHAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDHAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDHAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDHAP1 Gene

Proteins for SDHAP1 Gene

Post-translational modifications for SDHAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDHAP1 Gene

Domains & Families for SDHAP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDHAP1 Gene

Function for SDHAP1 Gene

genes like me logo Genes that share phenotypes with SDHAP1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDHAP1 Gene

Localization for SDHAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDHAP1 Gene

Pathways & Interactions for SDHAP1 Gene

SuperPathways for SDHAP1 Gene

No Data Available

Interacting Proteins for SDHAP1 Gene

Gene Ontology (GO) - Biological Process for SDHAP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDHAP1 Gene

Drugs & Compounds for SDHAP1 Gene

No Compound Related Data Available

Transcripts for SDHAP1 Gene

mRNA/cDNA for SDHAP1 Gene

(3) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SDHAP1 Gene

Succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SDHAP1 Gene

No ASD Table

Relevant External Links for SDHAP1 Gene

GeneLoc Exon Structure for
SDHAP1
ECgene alternative splicing isoforms for
SDHAP1

Expression for SDHAP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SDHAP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SDHAP1 Gene:

SDHAP1

SOURCE GeneReport for Unigene cluster for SDHAP1 Gene:

Hs.566872
genes like me logo Genes that share expression patterns with SDHAP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDHAP1 Gene

Orthologs for SDHAP1 Gene

Evolution for SDHAP1 Gene

ENSEMBL:
Gene Tree for SDHAP1 (if available)
TreeFam:
Gene Tree for SDHAP1 (if available)

No data available for Orthologs for SDHAP1 Gene

Paralogs for SDHAP1 Gene

No data available for Paralogs for SDHAP1 Gene

Variants for SDHAP1 Gene

Sequence variations from dbSNP and Humsavar for SDHAP1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000094484 -- 195,965,698(+) CAGAA(C/T)GCACA intron-variant
rs1000322981 -- 195,979,900(+) CACAC(A/G)GTGGC intron-variant
rs1000689227 -- 195,975,319(+) GTGAC(C/T)GACAA intron-variant
rs1000737715 -- 195,964,909(+) CCCCA(A/C)CCCCG intron-variant
rs1001393230 -- 195,960,829(+) AGTAT(C/T)AGATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SDHAP1 Gene

Variant ID Type Subtype PubMed ID
dgv1444e212 CNV loss 25503493
dgv2683n106 OTHER inversion 24896259
dgv2688n106 CNV duplication 24896259
dgv2891e59 CNV duplication 20981092
dgv2892e59 CNV duplication 20981092
dgv2893e59 CNV duplication 20981092
dgv2894e59 CNV duplication 20981092
dgv2895e59 CNV duplication 20981092
esv2664763 CNV deletion 23128226
esv2677674 CNV deletion 23128226
esv2759213 CNV gain+loss 17122850
esv27896 CNV gain+loss 19812545
esv3369057 CNV duplication 20981092
esv3384598 CNV duplication 20981092
esv3394919 CNV duplication 20981092
esv3431163 CNV duplication 20981092
esv3440897 CNV duplication 20981092
esv3563169 CNV deletion 23714750
esv3569217 CNV loss 25503493
esv3599259 CNV loss 21293372
esv3599260 CNV gain 21293372
nsv1002629 CNV gain 25217958
nsv1005193 CNV loss 25217958
nsv1006165 CNV gain 25217958
nsv1008512 CNV gain 25217958
nsv1010395 CNV gain 25217958
nsv10385 CNV loss 18304495
nsv1068315 OTHER inversion 25765185
nsv1077954 CNV duplication 25765185
nsv1117362 CNV tandem duplication 24896259
nsv1131755 CNV deletion 24896259
nsv1150001 CNV duplication 26484159
nsv428430 CNV gain+loss 18775914
nsv469518 CNV gain+loss 16826518
nsv471621 CNV gain+loss 15918152
nsv511234 CNV loss 21212237
nsv820779 CNV duplication 20802225
nsv822410 CNV loss 20364138
nsv829827 CNV gain+loss 17160897
nsv950307 CNV duplication 24416366
nsv965249 CNV duplication 23825009
nsv967107 CNV duplication 23825009
nsv979913 CNV duplication 23825009
nsv997797 CNV gain 25217958

Relevant External Links for SDHAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDHAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDHAP1 Gene

Disorders for SDHAP1 Gene

Relevant External Links for SDHAP1

Genetic Association Database (GAD)
SDHAP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SDHAP1

No disorders were found for SDHAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDHAP1 Gene

Publications for SDHAP1 Gene

  1. Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations. (PMID: 22158540) Wu C. … Lin D. (Nat. Genet. 2012) 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SDHAP1 Gene

Sources for SDHAP1 Gene

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