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Aliases for SDHAP1 Gene

Aliases for SDHAP1 Gene

  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein Pseudogene 1 2 3
  • Succinate Dehydrogenase Complex, Subunit A, Flavoprotein-Like 1 2 3
  • SDHALP1 3
  • SDHAL1 3

External Ids for SDHAP1 Gene

Previous HGNC Symbols for SDHAP1 Gene

  • SDHAL1
  • SDHALP1

Previous GeneCards Identifiers for SDHAP1 Gene

  • GC03U901267
  • GC03M195688
  • GC03M192963

Summaries for SDHAP1 Gene

GeneCards Summary for SDHAP1 Gene

SDHAP1 (Succinate Dehydrogenase Complex, Subunit A, Flavoprotein Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHAP1 Gene

Genomics for SDHAP1 Gene

Genomic Location for SDHAP1 Gene

Start:
195,959,748 bp from pter
End:
195,990,318 bp from pter
Size:
30,571 bases
Orientation:
Minus strand

Genomic View for SDHAP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SDHAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDHAP1 Gene

No data available for Regulatory Elements for SDHAP1 Gene

Proteins for SDHAP1 Gene

Post-translational modifications for SDHAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDHAP1 Gene

Domains for SDHAP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDHAP1 Gene

Function for SDHAP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SDHAP1 Gene

Localization for SDHAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDHAP1 Gene

Pathways for SDHAP1 Gene

SuperPathways for SDHAP1 Gene

No Data Available

Interacting Proteins for SDHAP1 Gene

Gene Ontology (GO) - Biological Process for SDHAP1 Gene

None

No data available for Pathways by source for SDHAP1 Gene

Transcripts for SDHAP1 Gene

mRNA/cDNA for SDHAP1 Gene

(3) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SDHAP1 Gene

Succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SDHAP1 Gene

No ASD Table

Relevant External Links for SDHAP1 Gene

GeneLoc Exon Structure for
SDHAP1
ECgene alternative splicing isoforms for
SDHAP1

Expression for SDHAP1 Gene

mRNA expression in normal human tissues for SDHAP1 Gene

SOURCE GeneReport for Unigene cluster for SDHAP1 Gene Hs.566872

genes like me logo Genes that share expressions with SDHAP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SDHAP1 Gene

Orthologs for SDHAP1 Gene

Evolution for SDHAP1 Gene

ENSEMBL:
Gene Tree for SDHAP1 (if available)
TreeFam:
Gene Tree for SDHAP1 (if available)

No data available for Orthologs for SDHAP1 Gene

Paralogs for SDHAP1 Gene

No data available for Paralogs for SDHAP1 Gene

Variants for SDHAP1 Gene

Sequence variations from dbSNP and Humsavar for SDHAP1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs14331 -- 195,981,978(-) GACAG(C/T)AGCAC intron-variant
rs450154 -- 195,962,054(-) ATTAC(C/T)GTGTG intron-variant
rs1056282 -- 195,969,825(-) ATACT(A/G)GAAGT intron-variant
rs1056753 -- 195,982,102(-) AGAGT(C/G)TCTTT intron-variant
rs1056757 -- 195,981,916(-) GTCAG(C/G)TTCAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SDHAP1 Gene

Variant ID Type Subtype PubMed ID
dgv1549e1 CNV Complex 17122850
nsv428430 CNV Gain+Loss 18775914
dgv1553e1 CNV Complex 17122850
nsv471621 CNV Gain+Loss 15918152
nsv822410 CNV Loss 20364138
dgv1556e1 CNV Complex 17122850
nsv829827 CNV Gain+Loss 17160897
nsv469518 CNV Complex 16826518
nsv10385 CNV Loss 18304495
esv27896 CNV Gain+Loss 19812545
nsv820779 CNV Duplication 20802225
esv2677674 CNV Deletion 23128226
dgv837e201 CNV Deletion 23290073
nsv511234 CNV Loss 21212237
nsv878170 CNV Gain 21882294
nsv878171 CNV Gain 21882294
esv2664763 CNV Deletion 23128226
esv2726553 CNV Deletion 23290073

Relevant External Links for SDHAP1 Gene

HapMap Linkage Disequilibrium report
SDHAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SDHAP1 Gene

Disorders for SDHAP1 Gene

Relevant External Links for SDHAP1

Genetic Association Database (GAD)
SDHAP1
genes like me logo Genes that share disorders with SDHAP1: view

No data available for UniProtKB/Swiss-Prot for SDHAP1 Gene

Publications for SDHAP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations. (PMID: 22158540) Wu C. … Lin D. (Nat. Genet. 2012) 48

Products for SDHAP1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SDHAP1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SDHAP1
    • Block miRNA regulation of SDHAP1 using miScript Target Protectors

    Sources for SDHAP1 Gene

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