Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SDHAF3 Gene

Aliases for SDHAF3 Gene

  • Succinate Dehydrogenase Complex Assembly Factor 3 2 3
  • SDH Assembly Factor 3 3 4
  • ACN9 3 4
  • Protein ACN9 Homolog, Mitochondrial 3
  • ACN9 Homolog (S. Cerevisiae) 2
  • ACN9 Homolog 3
  • DC11 3
  • Sdh7 3

External Ids for SDHAF3 Gene

Previous HGNC Symbols for SDHAF3 Gene

  • ACN9

Summaries for SDHAF3 Gene

GeneCards Summary for SDHAF3 Gene

SDHAF3 (Succinate Dehydrogenase Complex Assembly Factor 3) is a Protein Coding gene.

UniProtKB/Swiss-Prot for SDHAF3 Gene

  • Plays an essential role in the assembly of succinate dehydrogenase (SDH), an enzyme complex (also referred to as respiratory complex II) that is a component of both the tricarboxylic acid (TCA) cycle and the mitochondrial electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Promotes maturation of the iron-sulfur protein subunit SDHB of the SDH catalytic dimer, protecting it from the deleterious effects of oxidants. May act together with SDHAF1.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDHAF3 Gene

Genomics for SDHAF3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SDHAF3 Gene

Chromosome:
7
Start:
97,116,590 bp from pter
End:
97,181,763 bp from pter
Size:
65,174 bases
Orientation:
Plus strand

Genomic View for SDHAF3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SDHAF3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDHAF3 Gene

No data available for Regulatory Elements for SDHAF3 Gene

Proteins for SDHAF3 Gene

  • Protein details for SDHAF3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NRP4-SDHF3_HUMAN
    Recommended name:
    Succinate dehydrogenase assembly factor 3, mitochondrial
    Protein Accession:
    Q9NRP4
    Secondary Accessions:
    • A4D1J3
    • Q75MD6

    Protein attributes for SDHAF3 Gene

    Size:
    125 amino acids
    Molecular mass:
    14652 Da
    Quaternary structure:
    • Interacts with SDHB within an SDHA-SDHB subcomplex.

neXtProt entry for SDHAF3 Gene

Proteomics data for SDHAF3 Gene at MOPED

Post-translational modifications for SDHAF3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SDHAF3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SDHAF3 Gene

Domains & Families for SDHAF3 Gene

Protein Domains for SDHAF3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SDHAF3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NRP4

UniProtKB/Swiss-Prot:

SDHF3_HUMAN :
  • Belongs to the complex I LYR family. SDHAF3 subfamily.
Family:
  • Belongs to the complex I LYR family. SDHAF3 subfamily.
genes like me logo Genes that share domains with SDHAF3: view

Function for SDHAF3 Gene

Molecular function for SDHAF3 Gene

UniProtKB/Swiss-Prot Function:
Plays an essential role in the assembly of succinate dehydrogenase (SDH), an enzyme complex (also referred to as respiratory complex II) that is a component of both the tricarboxylic acid (TCA) cycle and the mitochondrial electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Promotes maturation of the iron-sulfur protein subunit SDHB of the SDH catalytic dimer, protecting it from the deleterious effects of oxidants. May act together with SDHAF1.

Phenotypes for SDHAF3 Gene

genes like me logo Genes that share phenotypes with SDHAF3: view

miRNA for SDHAF3 Gene

miRTarBase miRNAs that target SDHAF3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SDHAF3

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for SDHAF3 Gene

Localization for SDHAF3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SDHAF3 Gene

Mitochondrion matrix.

Gene Ontology (GO) - Cellular Components for SDHAF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
GO:0005758 mitochondrial intermembrane space ISS 10103055
GO:0005759 mitochondrial matrix IEA --
genes like me logo Genes that share ontologies with SDHAF3: view

No data available for Subcellular locations from COMPARTMENTS for SDHAF3 Gene

Pathways & Interactions for SDHAF3 Gene

SuperPathways for SDHAF3 Gene

No Data Available

Interacting Proteins for SDHAF3 Gene

Gene Ontology (GO) - Biological Process for SDHAF3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006111 regulation of gluconeogenesis ISS --
genes like me logo Genes that share ontologies with SDHAF3: view

No data available for Pathways by source and SIGNOR curated interactions for SDHAF3 Gene

Drugs & Compounds for SDHAF3 Gene

No Compound Related Data Available

Transcripts for SDHAF3 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SDHAF3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SDHAF3 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b
SP1:
SP2: -

Relevant External Links for SDHAF3 Gene

GeneLoc Exon Structure for
SDHAF3
ECgene alternative splicing isoforms for
SDHAF3

Expression for SDHAF3 Gene

mRNA expression in normal human tissues for SDHAF3 Gene

Protein differential expression in normal tissues from HIPED for SDHAF3 Gene

This gene is overexpressed in Liver (38.1) and Heart (30.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SDHAF3 Gene



genes like me logo Genes that share expression patterns with SDHAF3: view

Protein tissue co-expression partners for SDHAF3 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SDHAF3 Gene

Orthologs for SDHAF3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SDHAF3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ACN9 35
  • 83.73 (n)
  • 81.6 (a)
ACN9 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ACN9 35
  • 86.67 (n)
  • 84 (a)
ACN9 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Acn9 35
  • 84.27 (n)
  • 82.4 (a)
Acn9 16
Acn9 36
  • 82 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ACN9 35
  • 98.93 (n)
  • 98.4 (a)
ACN9 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ACN9 36
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves ACN9 35
  • 65.3 (n)
  • 58.2 (a)
ACN9 36
  • 57 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ACN9 36
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia acn9 35
  • 63.77 (n)
  • 60.87 (a)
zebrafish
(Danio rerio)
Actinopterygii acn9 35
  • 59.89 (n)
  • 58.47 (a)
acn9 36
  • 56 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010277 35
  • 51.75 (n)
  • 48.57 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG14898 35
  • 49.17 (n)
  • 44.55 (a)
CG14898 36
  • 38 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F25H9.7 36
  • 31 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ACN9 38
Species with no ortholog for SDHAF3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SDHAF3 Gene

ENSEMBL:
Gene Tree for SDHAF3 (if available)
TreeFam:
Gene Tree for SDHAF3 (if available)

Paralogs for SDHAF3 Gene

Pseudogenes.org Pseudogenes for SDHAF3 Gene

genes like me logo Genes that share paralogs with SDHAF3: view

No data available for Paralogs for SDHAF3 Gene

Variants for SDHAF3 Gene

Sequence variations from dbSNP and Humsavar for SDHAF3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs7837 -- 97,181,600(+) TCATT(C/T)TGAAC utr-variant-3-prime
rs13475 -- 97,181,417(+) TGTAT(A/G)AAATT utr-variant-3-prime
rs1199291 -- 97,158,412(-) agaca(A/G)aggtt intron-variant
rs1199292 -- 97,158,285(-) GGAAA(C/T)ATTAA intron-variant
rs1320433 -- 97,180,018(+) GCACT(C/T)TGTCT intron-variant

Variation tolerance for SDHAF3 Gene

Residual Variation Intolerance Score: 62.41% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.32; 41.43% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SDHAF3 Gene

HapMap Linkage Disequilibrium report
SDHAF3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SDHAF3 Gene

Disorders for SDHAF3 Gene

Relevant External Links for SDHAF3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SDHAF3
genes like me logo Genes that share disorders with SDHAF3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDHAF3 Gene

Publications for SDHAF3 Gene

  1. The LYR factors SDHAF1 and SDHAF3 mediate maturation of the iron- sulfur subunit of succinate dehydrogenase. (PMID: 24954417) Na U. … Winge D.R. (Cell Metab. 2014) 2 67
  2. Acn9 is a novel protein of gluconeogenesis that is located in the mitochondrial intermembrane space. (PMID: 10103055) Dennis R.A. … McCammon M.T. (Eur. J. Biochem. 1999) 23 67
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  4. N-terminome analysis of the human mitochondrial proteome. (PMID: 25944712) Vaca Jacome A.S. … Carapito C. (Proteomics 2015) 67
  5. Genome-wide association study identifies a region on chromosome 11q14.3 associated with late rectal bleeding following radiation therapy for prostate cancer. (PMID: 23719583) Kerns S.L. … Ostrer H. (Radiother Oncol 2013) 67

Products for SDHAF3 Gene

Sources for SDHAF3 Gene

Back to Top

Content