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Aliases for SDCBPP2 Gene

Aliases for SDCBPP2 Gene

  • Syndecan Binding Protein Pseudogene 2 2 3 5
  • Syndecan Binding Protein (Syntenin) Pseudogene 2 2

External Ids for SDCBPP2 Gene

Previous GeneCards Identifiers for SDCBPP2 Gene

  • GC08P070855

Summaries for SDCBPP2 Gene

GeneCards Summary for SDCBPP2 Gene

SDCBPP2 (Syndecan Binding Protein Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDCBPP2 Gene

Genomics for SDCBPP2 Gene

Regulatory Elements for SDCBPP2 Gene

Enhancers for SDCBPP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F069946 0.8 ENCODE 0.8 +3.4 3420 0.2 CTCF ESRRA MAX ZNF384 RAD21 RARA ZNF316 SMC3 NR2F6 MAFK RNU1-101P RN7SKP29 SDCBPP2 GC08M069988
GH08F069942 0.7 ENCODE 0.8 -0.4 -361 0.2 CTCF RAD21 E2F1 ZNF143 SMC3 ZSCAN29 ZNF600 MAFK ZNF654 MAFG ENSG00000280393 SDCBPP2
GH08F069944 0.4 ENCODE 0.8 +1.9 1939 0.6 TEAD4 RNU1-101P RN7SKP29 SDCBPP2 GC08M069988
GH08F069978 0.8 Ensembl ENCODE 0.3 +36.7 36663 1.4 SMARCA4 IKZF1 EED TEAD4 JUNB POU5F1 CREM SLCO5A1 LOC101929759 GC08M069988 SDCBPP2
GH08F069977 0.6 ENCODE 0.3 +34.6 34590 0.2 JUND BCL11A POLR2A TEAD4 POU5F1 RNU1-101P GC08M069988 SDCBPP2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SDCBPP2 on UCSC Golden Path with GeneCards custom track

Promoters for SDCBPP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001901997 -121 800 CTCF RAD21 E2F1 ZNF143 SMC3 ZSCAN29 ZNF600 MAFK ZNF654 MAFG

Genomic Location for SDCBPP2 Gene

Chromosome:
8
Start:
69,942,921 bp from pter
End:
69,944,648 bp from pter
Size:
1,728 bases
Orientation:
Plus strand

Genomic View for SDCBPP2 Gene

Genes around SDCBPP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDCBPP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDCBPP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDCBPP2 Gene

Proteins for SDCBPP2 Gene

Post-translational modifications for SDCBPP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDCBPP2 Gene

Domains & Families for SDCBPP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDCBPP2 Gene

Function for SDCBPP2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDCBPP2 Gene

Localization for SDCBPP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDCBPP2 Gene

Pathways & Interactions for SDCBPP2 Gene

SuperPathways for SDCBPP2 Gene

No Data Available

Interacting Proteins for SDCBPP2 Gene

Gene Ontology (GO) - Biological Process for SDCBPP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDCBPP2 Gene

Transcripts for SDCBPP2 Gene

mRNA/cDNA for SDCBPP2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SDCBPP2 Gene

No ASD Table

Relevant External Links for SDCBPP2 Gene

GeneLoc Exon Structure for
SDCBPP2
ECgene alternative splicing isoforms for
SDCBPP2

Expression for SDCBPP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SDCBPP2 Gene

mRNA differential expression in normal tissues according to GTEx for SDCBPP2 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x6.0), Brain - Caudate (basal ganglia) (x4.8), Brain - Putamen (basal ganglia) (x4.7), Brain - Anterior cingulate cortex (BA24) (x4.5), Brain - Frontal Cortex (BA9) (x4.4), and Brain - Cortex (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of SDCBPP2 Gene:

SDCBPP2
genes like me logo Genes that share expression patterns with SDCBPP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SDCBPP2 Gene

Orthologs for SDCBPP2 Gene

Evolution for SDCBPP2 Gene

ENSEMBL:
Gene Tree for SDCBPP2 (if available)
TreeFam:
Gene Tree for SDCBPP2 (if available)

No data available for Orthologs for SDCBPP2 Gene

Paralogs for SDCBPP2 Gene

No data available for Paralogs for SDCBPP2 Gene

Variants for SDCBPP2 Gene

Relevant External Links for SDCBPP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDCBPP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SDCBPP2 Gene

Disorders for SDCBPP2 Gene

Relevant External Links for SDCBPP2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SDCBPP2

No disorders were found for SDCBPP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDCBPP2 Gene

Publications for SDCBPP2 Gene

No publications were found for SDCBPP2 Gene.

Products for SDCBPP2 Gene

Sources for SDCBPP2 Gene

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