Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SDCBPP1 Gene

Aliases for SDCBPP1 Gene

  • Syndecan Binding Protein Pseudogene 1 2 3 5
  • Syndecan Binding Protein (Syntenin) Pseudogene 1 2

External Ids for SDCBPP1 Gene

Previous GeneCards Identifiers for SDCBPP1 Gene

  • GC10M006336

Summaries for SDCBPP1 Gene

GeneCards Summary for SDCBPP1 Gene

SDCBPP1 (Syndecan Binding Protein Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDCBPP1 Gene

Genomics for SDCBPP1 Gene

Regulatory Elements for SDCBPP1 Gene

Enhancers for SDCBPP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F006295 1.7 FANTOM5 Ensembl ENCODE 0.8 -4.2 -4218 7.0 PKNOX1 MLX WRNIP1 ZNF121 CBX5 ZNF207 FOS ZHX2 TBX21 SREBF1 PFKFB3 ENSG00000226647 ENSG00000213994 PRKCQ IL15RA RBM17 SDCBPP1 GC10M006317
GH10F006290 1.1 FANTOM5 Ensembl ENCODE 0.8 +3.2 3184 1.4 SREBF1 KLF1 ZNF512 SIN3A NR3C1 NR2F2 PRKCQ PFKFB3 SDCBPP1 LOC399715
GH10F006278 1.6 FANTOM5 Ensembl ENCODE 0.4 +14.9 14901 2.0 PKNOX1 ATF1 ARID4B SIN3A ZNF48 YY1 FOS SP5 MXD4 TBX21 PFKFB3 LOC399715 SDCBPP1
GH10F006311 0.6 FANTOM5 0.3 -17.3 -17273 0.4 JUND HNF1A BCL6 MIXL1 LOC399715 GC10M006317 SDCBPP1
GH10F006314 0.5 ENCODE 0.3 -20.2 -20216 1.6 JUND ZNF146 CBX3 ZNF558 LOC399715 GC10M006317 SDCBPP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SDCBPP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SDCBPP1 Gene

Chromosome:
10
Start:
6,293,100 bp from pter
End:
6,294,684 bp from pter
Size:
1,585 bases
Orientation:
Minus strand

Genomic View for SDCBPP1 Gene

Genes around SDCBPP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDCBPP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDCBPP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDCBPP1 Gene

Proteins for SDCBPP1 Gene

Post-translational modifications for SDCBPP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDCBPP1 Gene

Domains & Families for SDCBPP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDCBPP1 Gene

Function for SDCBPP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDCBPP1 Gene

Localization for SDCBPP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDCBPP1 Gene

Pathways & Interactions for SDCBPP1 Gene

SuperPathways for SDCBPP1 Gene

No Data Available

Interacting Proteins for SDCBPP1 Gene

Gene Ontology (GO) - Biological Process for SDCBPP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDCBPP1 Gene

Transcripts for SDCBPP1 Gene

mRNA/cDNA for SDCBPP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SDCBPP1 Gene

No ASD Table

Relevant External Links for SDCBPP1 Gene

GeneLoc Exon Structure for
SDCBPP1
ECgene alternative splicing isoforms for
SDCBPP1

Expression for SDCBPP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SDCBPP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SDCBPP1 Gene:

SDCBPP1
genes like me logo Genes that share expression patterns with SDCBPP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SDCBPP1 Gene

Orthologs for SDCBPP1 Gene

Evolution for SDCBPP1 Gene

ENSEMBL:
Gene Tree for SDCBPP1 (if available)
TreeFam:
Gene Tree for SDCBPP1 (if available)

No data available for Orthologs for SDCBPP1 Gene

Paralogs for SDCBPP1 Gene

No data available for Paralogs for SDCBPP1 Gene

Variants for SDCBPP1 Gene

Relevant External Links for SDCBPP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDCBPP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SDCBPP1 Gene

Disorders for SDCBPP1 Gene

No disorders were found for SDCBPP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SDCBPP1 Gene

Publications for SDCBPP1 Gene

No publications were found for SDCBPP1 Gene.

Products for SDCBPP1 Gene

Sources for SDCBPP1 Gene

Content
Loading form....