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Aliases for SDCBP2-AS1 Gene

Subcategory (RNA class) for SDCBP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SDCBP2-AS1 Gene

  • SDCBP2 Antisense RNA 1 2 3 5
  • SDCBP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SDCBP2-AS1 Gene

Summaries for SDCBP2-AS1 Gene

GeneCards Summary for SDCBP2-AS1 Gene

SDCBP2-AS1 (SDCBP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDCBP2-AS1 Gene

Genomics for SDCBP2-AS1 Gene

Regulatory Elements for SDCBP2-AS1 Gene

Enhancers for SDCBP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F001185 0.9 Ensembl ENCODE 12.6 -138.2 -138193 3.2 HDGF ARNT ARID4B DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF207 ZNF263 TBC1D20 ACTG1P3 SDCBP2-AS1 ENSG00000229728 TMEM74B ENSG00000274269
GH20F001375 0.5 Ensembl ENCODE 6.1 +53.8 53753 8.0 SIN3A ZNF121 ZNF366 SCRT2 FOS SMAD5 CEBPB JUNB SSRP1 KLF16 SDCBP2 SDCBP2-AS1 GC20M001393 GC20M001394 ENSG00000229728
GH20F001373 0.2 ENCODE 5.7 +48.4 48429 0.2 SDCBP2-AS1 ENSG00000229728 GC20M001393 GC20M001394
GH20F001336 0.9 Ensembl ENCODE 5.2 +12.2 12158 3.0 PAF1 ESRRA NR2F1 JUN BHLHE40 HLF NR2F2 POLR2A TCF7 ZNF600 SDCBP2 SDCBP2-AS1 FKBP1A ENSG00000229728
GH20F001370 0.7 ENCODE 4.9 +46.0 45968 2.6 HLF CEBPB CEBPG ZIC2 JUND ZNF366 SMARCA4 POLR2A CEBPA ZNF600 FKBP1A SDCBP2 SDCBP2-AS1 ENSG00000229728 GC20M001393 GC20M001394
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SDCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SDCBP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000396415 257 1601 PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9

Genomic Location for SDCBP2-AS1 Gene

Chromosome:
20
Start:
1,325,343 bp from pter
End:
1,378,735 bp from pter
Size:
53,393 bases
Orientation:
Plus strand

Genomic View for SDCBP2-AS1 Gene

Genes around SDCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDCBP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDCBP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDCBP2-AS1 Gene

Proteins for SDCBP2-AS1 Gene

Post-translational modifications for SDCBP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDCBP2-AS1 Gene

Domains & Families for SDCBP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDCBP2-AS1 Gene

Function for SDCBP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDCBP2-AS1 Gene

Localization for SDCBP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDCBP2-AS1 Gene

Pathways & Interactions for SDCBP2-AS1 Gene

SuperPathways for SDCBP2-AS1 Gene

No Data Available

Interacting Proteins for SDCBP2-AS1 Gene

Gene Ontology (GO) - Biological Process for SDCBP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SDCBP2-AS1 Gene

Transcripts for SDCBP2-AS1 Gene

mRNA/cDNA for SDCBP2-AS1 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SDCBP2-AS1 Gene

SDCBP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SDCBP2-AS1 Gene

No ASD Table

Relevant External Links for SDCBP2-AS1 Gene

GeneLoc Exon Structure for
SDCBP2-AS1
ECgene alternative splicing isoforms for
SDCBP2-AS1

Expression for SDCBP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SDCBP2-AS1 Gene

SOURCE GeneReport for Unigene cluster for SDCBP2-AS1 Gene:

Hs.655785
genes like me logo Genes that share expression patterns with SDCBP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SDCBP2-AS1 Gene

Orthologs for SDCBP2-AS1 Gene

Evolution for SDCBP2-AS1 Gene

ENSEMBL:
Gene Tree for SDCBP2-AS1 (if available)
TreeFam:
Gene Tree for SDCBP2-AS1 (if available)

No data available for Orthologs for SDCBP2-AS1 Gene

Paralogs for SDCBP2-AS1 Gene

No data available for Paralogs for SDCBP2-AS1 Gene

Variants for SDCBP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SDCBP2-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1062369 -- 1,369,038(-) CCAGC(A/C)CCATT intron-variant, utr-variant-3-prime
rs111254124 -- 1,357,354(+) TTTTT(A/T)TTCTT intron-variant
rs111267089 -- 1,360,434(+) ACATG(A/G)CCTTT intron-variant
rs111279907 -- 1,353,752(+) TTTGT(A/G)TGTTA intron-variant
rs111436576 -- 1,351,053(+) TTATT(A/G)GTGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SDCBP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2664030 CNV deletion 23128226
esv3644976 CNV loss 21293372
nsv1057097 CNV gain 25217958
nsv1118074 CNV deletion 24896259
nsv1147992 OTHER inversion 26484159
nsv522008 CNV gain 19592680
nsv979410 CNV duplication 23825009

Relevant External Links for SDCBP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDCBP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDCBP2-AS1 Gene

Disorders for SDCBP2-AS1 Gene

Relevant External Links for SDCBP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SDCBP2-AS1

No disorders were found for SDCBP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDCBP2-AS1 Gene

Publications for SDCBP2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SDCBP2-AS1 Gene

Sources for SDCBP2-AS1 Gene

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