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Aliases for SDC4P Gene

Subcategory (RNA class) for SDC4P Gene


Aliases for SDC4P Gene

  • Syndecan 4 Pseudogene 2 3

External Ids for SDC4P Gene

ORGUL Members for SDC4P Gene

Previous GeneCards Identifiers for SDC4P Gene

  • GC22U990241
  • GC22M029202
  • GC22M029203
  • GC22M029204
  • GC22M030877
  • GC22M013839

Summaries for SDC4P Gene

GeneCards Summary for SDC4P Gene

SDC4P (Syndecan 4 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for SDC4P Gene

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

View fRNAdb secondary structures for SDC4P

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SDC4P Gene

Genomics for SDC4P Gene

Regulatory Elements for SDC4P Gene

Genomic Location for SDC4P Gene

30,481,290 bp from pter
30,481,911 bp from pter
622 bases
Minus strand

Genomic View for SDC4P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for SDC4P Gene

ORGUL Member Location for SDC4P Gene

ORGUL Member Location for SDC4P gene

Proteins for SDC4P Gene

Post-translational modifications for SDC4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDC4P Gene

Domains & Families for SDC4P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SDC4P Gene

Function for SDC4P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDC4P Gene

Localization for SDC4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SDC4P Gene

Pathways & Interactions for SDC4P Gene

SuperPathways for SDC4P Gene

No Data Available

Interacting Proteins for SDC4P Gene

Gene Ontology (GO) - Biological Process for SDC4P Gene


No data available for Pathways by source and SIGNOR curated interactions for SDC4P Gene

Drugs & Compounds for SDC4P Gene

No Compound Related Data Available

Transcripts for SDC4P Gene

fRNAdb Secondary structures for SDC4P Gene

  • NONHSAG033677

mRNA/cDNA for SDC4P Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SDC4P Gene

No ASD Table

Relevant External Links for SDC4P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SDC4P Gene

mRNA expression in normal human tissues for SDC4P Gene

mRNA differential expression in normal tissues according to GTEx for SDC4P Gene

This gene is overexpressed in Liver (x39.7) and Testis (x5.2).

SOURCE GeneReport for Unigene cluster for SDC4P Gene Hs.534651

genes like me logo Genes that share expression patterns with SDC4P: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SDC4P Gene

Orthologs for SDC4P Gene

Evolution for SDC4P Gene

Gene Tree for SDC4P (if available)
Gene Tree for SDC4P (if available)

No data available for Orthologs for SDC4P Gene

Paralogs for SDC4P Gene

No data available for Paralogs for SDC4P Gene

Variants for SDC4P Gene

Sequence variations from dbSNP and Humsavar for SDC4P Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs737942 -- 30,480,848(+) CAGGC(A/G)GAACA downstream-variant-500B
rs2189835 -- 30,482,230(+) CTTAG(A/C)ATAAT upstream-variant-2KB
rs4820859 -- 30,481,720(+) ATCTC(C/T)AGAGC nc-transcript-variant
rs5749109 -- 30,482,477(+) aattg(C/G)tggct upstream-variant-2KB
rs7289277 -- 30,482,860(+) aggcc(A/G)aggtg upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SDC4P Gene

Variant ID Type Subtype PubMed ID
nsv829171 CNV Loss 20364138

Relevant External Links for SDC4P Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SDC4P Gene

Disorders for SDC4P Gene

Relevant External Links for SDC4P

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SDC4P: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SDC4P Gene

Publications for SDC4P Gene

  1. Identification of a syndecan 4 pseudogene. (PMID: 12652906) Spring S.C. … Terman B.I. (DNA Seq. 2002) 1 2 23 67
  2. Genetic variants associated with breast size also influence breast cancer risk. (PMID: 22747683) Eriksson N. … Tung J.Y. (BMC Med. Genet. 2012) 67
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for SDC4P Gene

Sources for SDC4P Gene

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