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Aliases for SCUBE2 Gene

Aliases for SCUBE2 Gene

  • Signal Peptide, CUB Domain, EGF-Like 2 2 3
  • CEGP1 3 4
  • Signal Peptide, CUB And EGF-Like Domain-Containing Protein 2 3
  • Protein CEGP1 4
  • CEGB1 3
  • CEGF1 3

External Ids for SCUBE2 Gene

Previous GeneCards Identifiers for SCUBE2 Gene

  • GC11M009733
  • GC11M009081
  • GC11M009006
  • GC11M008999
  • GC11M008711

Summaries for SCUBE2 Gene

GeneCards Summary for SCUBE2 Gene

SCUBE2 (Signal Peptide, CUB Domain, EGF-Like 2) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is LTBP3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCUBE2 Gene

Genomics for SCUBE2 Gene

Regulatory Elements for SCUBE2 Gene

Genomic Location for SCUBE2 Gene

Start:
9,019,500 bp from pter
End:
9,138,114 bp from pter
Size:
118,615 bases
Orientation:
Minus strand

Genomic View for SCUBE2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCUBE2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCUBE2 Gene

Proteins for SCUBE2 Gene

  • Protein details for SCUBE2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NQ36-SCUB2_HUMAN
    Recommended name:
    Signal peptide, CUB and EGF-like domain-containing protein 2
    Protein Accession:
    Q9NQ36
    Secondary Accessions:
    • Q2NKQ8
    • Q6ZWI1

    Protein attributes for SCUBE2 Gene

    Size:
    999 amino acids
    Molecular mass:
    109966 Da
    Quaternary structure:
    • Forms homooligomers and heterooligomers with SCUBE1 and SCUBE3.

    Alternative splice isoforms for SCUBE2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SCUBE2 Gene

Proteomics data for SCUBE2 Gene at MOPED

Post-translational modifications for SCUBE2 Gene

  • Glycosylation at Asn659
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for SCUBE2 Gene

Domains for SCUBE2 Gene

Suggested Antigen Peptide Sequences for SCUBE2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NQ36

UniProtKB/Swiss-Prot:

SCUB2_HUMAN :
  • Q9NQ36
Domain:
  • Contains 1 CUB domain.
  • Contains 9 EGF-like domains.
genes like me logo Genes that share domains with SCUBE2: view

No data available for Gene Families for SCUBE2 Gene

Function for SCUBE2 Gene

Gene Ontology (GO) - Molecular Function for SCUBE2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SCUBE2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCUBE2 Gene

Localization for SCUBE2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCUBE2 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SCUBE2 Gene COMPARTMENTS Subcellular localization image for SCUBE2 gene
Compartment Confidence
extracellular 3
plasma membrane 3
mitochondrion 2
nucleus 2

Gene Ontology (GO) - Cellular Components for SCUBE2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
genes like me logo Genes that share ontologies with SCUBE2: view

Pathways for SCUBE2 Gene

SuperPathways for SCUBE2 Gene

No Data Available

Interacting Proteins for SCUBE2 Gene

Gene Ontology (GO) - Biological Process for SCUBE2 Gene

None

No data available for Pathways by source for SCUBE2 Gene

Transcripts for SCUBE2 Gene

Unigene Clusters for SCUBE2 Gene

Signal peptide, CUB domain, EGF-like 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCUBE2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19a · 19b ^ 20 ^ 21 ^ 22 ^ 23a ·
SP1: - -
SP2: - - - - - - - -
SP3: -
SP4:

ExUns: 23b · 23c
SP1:
SP2:
SP3:
SP4:

Relevant External Links for SCUBE2 Gene

GeneLoc Exon Structure for
SCUBE2
ECgene alternative splicing isoforms for
SCUBE2

Expression for SCUBE2 Gene

mRNA expression in normal human tissues for SCUBE2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SCUBE2 Gene

This gene is overexpressed in Bladder (6.6) and Pancreas (4.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SCUBE2 Gene

SOURCE GeneReport for Unigene cluster for SCUBE2 Gene Hs.523468

mRNA Expression by UniProt/SwissProt for SCUBE2 Gene

Q9NQ36-SCUB2_HUMAN
Tissue specificity: Expressed in a broad spectrum of adult tissues.
genes like me logo Genes that share expressions with SCUBE2: view

Orthologs for SCUBE2 Gene

This gene was present in the common ancestor of animals.

Orthologs for SCUBE2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCUBE2 35
  • 99.28 (n)
  • 98.97 (a)
SCUBE2 36
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCUBE2 35
  • 89.21 (n)
  • 89.18 (a)
SCUBE2 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCUBE2 35
  • 91.13 (n)
  • 92.03 (a)
SCUBE2 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Scube2 35
  • 88.29 (n)
  • 89.88 (a)
Scube2 16
Scube2 36
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCUBE2 36
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCUBE2 36
  • 75 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Scube2 35
  • 88.52 (n)
  • 90.41 (a)
chicken
(Gallus gallus)
Aves SCUBE2 35
  • 75.59 (n)
  • 78.62 (a)
SCUBE2 36
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCUBE2 36
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia scube2 35
  • 68.58 (n)
  • 69.6 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.3848 35
scube2 35
  • 65.01 (n)
  • 64.62 (a)
scube2 36
  • 63 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG32373 36
  • 22 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 37 (a)
OneToMany
Species with no ortholog for SCUBE2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCUBE2 Gene

ENSEMBL:
Gene Tree for SCUBE2 (if available)
TreeFam:
Gene Tree for SCUBE2 (if available)

Paralogs for SCUBE2 Gene

Pseudogenes.org Pseudogenes for SCUBE2 Gene

genes like me logo Genes that share paralogs with SCUBE2: view

Variants for SCUBE2 Gene

Sequence variations from dbSNP and Humsavar for SCUBE2 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs1367 -- 9,021,022(+) ATTTG(C/T)ATTGA utr-variant-3-prime
rs932287 -- 9,023,220(-) GTTCT(C/T)ATAAT intron-variant
rs1110216 -- 9,024,413(-) TACAG(A/T)TGCCT intron-variant, reference, missense
rs1111010 -- 9,028,388(-) TGCCC(C/T)GTACC intron-variant
rs1112322 -- 9,070,864(+) TTGCT(C/G)TTTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SCUBE2 Gene

Variant ID Type Subtype PubMed ID
nsv7215 OTHER Inversion 18451855
nsv499766 OTHER Inversion 21111241
nsv896984 CNV Gain 21882294
esv33264 CNV Loss 17666407
nsv896985 CNV Gain 21882294
nsv7667 CNV Insertion 18451855
esv2744090 CNV Deletion 23290073
esv2744091 CNV Deletion 23290073
nsv467706 CNV Loss 19166990
esv1003548 CNV Insertion 20482838
esv267588 CNV Insertion 20981092
esv1135936 CNV Insertion 17803354

Relevant External Links for SCUBE2 Gene

HapMap Linkage Disequilibrium report
SCUBE2
Human Gene Mutation Database (HGMD)
SCUBE2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SCUBE2 Gene

Disorders for SCUBE2 Gene

Relevant External Links for SCUBE2

Genetic Association Database (GAD)
SCUBE2
Human Genome Epidemiology (HuGE) Navigator
SCUBE2
genes like me logo Genes that share disorders with SCUBE2: view

No data available for UniProtKB/Swiss-Prot for SCUBE2 Gene

Publications for SCUBE2 Gene

  1. Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7. (PMID: 11528127) Amid C. … Schmidt E.R. (Cytogenet. Cell Genet. 2001) 2 3 4
  2. Identification of a novel family of cell-surface proteins expressed in human vascular endothelium. (PMID: 12270931) Yang R.-B. … Topper J.N. (J. Biol. Chem. 2002) 2 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway. (PMID: 18676680) Hosgood H.D. … Lan Q. (Carcinogenesis 2008) 3 48

Products for SCUBE2 Gene

  • antibodies-online peptides for SCUBE2
  • antibodies-online antibodies for SCUBE2
  • antibodies-online kits for SCUBE2

Sources for SCUBE2 Gene

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